FvH4_6g39950

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000320
Physical Location & Seq
Reverse (-)
31547912 .. 31551090
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39950.t1

Sequence Viewer

Length: 1779 bp
ATGTCGACACAGTTTCCGGCGTTCGCTGTTCTTATTATCATCCTACAGCTCTTCATATCTCTGGCTCGAGCCGAAGTGCATTACCACGATTTCATAGTTAAGGAGGTAAACTTCACAAGATTGTGCGAGTCAAAGCTTATGTTAGTAGTAAACGAGAGTTTTCCCGGTCCAGAACTACGTGCTCGCAAAGGGGATACAATTTATGTTAATGTTTACAATCAAGGATTTTATGGTTTCACCATTCACTGGCATGGAGTAAAGCAACCCAGAAATCCATGGTTTGATGGCCCGGAATTTGTGACACAATGTCCAATTTCACCAGGAACAAATTTTACCTATCAAATTAATTTGACCACAGAAGAAGGAACTGTATGGTGGCATGCTCATAGTGACTGGACGAGAGCTAGCGTTCATGGAACCATTGTCGTCTTGCCTGCTCTTGGAACAACATATCCATTTCCTGTGCCTGATGAAGAGGAGAGCATTGTGTTTGGATCTTGGTATATGGGAAATTTGAAAGAAACGATTGACGAATGTATGGTGCCAGAAAATGCTACCAACTTACCCGAAGCAGCTGCTTACACAATAAATGGCCAACCTGGGGATTTTGCTCTATGCTCGGCCAATTCATCATATCGGTTTAAGGTGGACTATGGCAAGACGTATCTTCTTCGGATTCTGAACGCAAACATTGATGCAGAGATGTACTTTGCAATTGCTGAGCATAATCTCACTTTGATTGGCATGGATGGTGCCTATACGAAACCCCTTGAATCAAGCTACATAATGATAAGCCCTGGACAAACAATGGATTTGTTGCTCAACACAAATATTTCGACTCTGGGGAGTTACTACATGGTTGCAAGAGAATATGTGAGTGCTACAATTGACACAGTATCTAGCTATCTGGATGATGCTGTTGCAATCCTTGAATATAATGGTAGCTACTCCAGTTTGGATGCTCCGGTATATCCTGAACTCCTTCCCATGTCCTTATCCCAAGAACCAGCATATAGCTTCATCAAGCAAATAAGAAGCTTAGCCACCCCAGAATATCCTATAAATGTCCCAACAGAGAGTGACGTTACTAAGAGAATGTATATAACAGCTTCCTCCAACGCTCTTTACTGCACTCCAGATTTAGGTCCCTCATGTGTCAACATATCTTGGGCTGCAAGCGTCAACAATATTAGTTGGGTTAATCCATCAGAATCTATTTTGCAAGCCTACTACAACAACATAAGCGAGCCGATTTACGAAACAGATTTCCCAGATGAGCCCCCTGTTTATTTTAACTTCACCGATAAATCAACGGCGATAGATTTAGGCTTAACAGTCCAAGGAACAAAGGTGACGATGCTGGAATACAATGAAACAGTTGAGATGGTATTTCAAGGAACTGATGTGGAGGGAGCCTCCGTGAATCATCCAATGCACATCCATGGACTTAGCTTTTATGTGCTTGGGTTTGGTTTTGGGAATTACTTCGCCGAGAGGGACTCAAAAACCTTCAATCTGATTGATCCTCCTTTTGTAGCAACGTTCATAACTCCAAAAAATGGATGGTTAGCTATCCGATTCGTAGCTGATAATCCAGGTGTGTGGTTTTGGCATTGTCATATGGAGAGACATTTGACATGGGGTATGGAGTCTGCTTTTATAGTGAAGAATGGGGGCACACCGGAGACTACTATGCTCCCTCCTCCGGCTACAATGCCTTCCTGCGACGTGCCGTTGGAGTCTTCAGCCATCCGAGATAAACTAGAACGGGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

593

Amino Acids

66.35

Weight (kDa)

4.65

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 33 - 145 3.5e-37 Multicopper oxidase
Cu-oxidase PF00394 161 - 314 1.8e-28 Multicopper oxidase
Cu-oxidase_2 PF07731 423 - 557 2.8e-36 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 541, 752
AccB7I CCANNNNNTGG 2 cut(s) 246, 1559
AccI GTMKAC 1 cut(s) 5
AclI AACGTT 1 cut(s) 1541
AclWI GGATC 2 cut(s) 502, 1517
AcoI YGGCCR 2 cut(s) 592, 621
AcsI RAATTY 3 cut(s) 293, 328, 511
AcuI CTGAAG 1 cut(s) 1728
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 6 cut(s) 246, 440, 601, 1142, 1559, 1705
AgsI TTSAA 5 cut(s) 517, 773, 932, 1394, 1513
AhdI GACNNNNNGTC 1 cut(s) 306
AjiI CACGTC 1 cut(s) 1729
AjnI CCWGG 4 cut(s) 319, 598, 796, 1594
AloI GAACNNNNNNTCC 2 cut(s) 436, 468
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 2 cut(s) 1621, 1679
AlwI GGATC 2 cut(s) 502, 1517
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 3 cut(s) 286, 592, 621
ApeKI GCWGC 3 cut(s) 572, 575, 1172
ApoI RAATTY 3 cut(s) 293, 328, 511
AseI ATTAAT 1 cut(s) 345
Asp700I GAANNNNTTC 2 cut(s) 981, 1484
AspS9I GGNCC 3 cut(s) 167, 287, 1145
AsuC2I CCSGG 2 cut(s) 165, 290
AsuHPI GGTGA 4 cut(s) 229, 309, 1291, 1363
AsuNHI GCTAGC 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 2 cut(s) 167, 1145
BaeGI GKGCMC 1 cut(s) 1679
BalI TGGCCA 1 cut(s) 594
BanI GGYRCC 2 cut(s) 541, 752
BanII GRGCYC 1 cut(s) 1281
BbsI GAAGAC 1 cut(s) 1734
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 3 cut(s) 562, 584, 1159
BccI CCATC 6 cut(s) 278, 743, 1213, 1378, 1557, 1757
BceAI ACGGC 2 cut(s) 1329, 1717
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BciT130I CCWGG 4 cut(s) 321, 600, 798, 1596
BciVI GTATCC 1 cut(s) 187
BcnI CCSGG 2 cut(s) 165, 290
BcoDI GTCTC 2 cut(s) 1621, 1679
BfaI CTAG 3 cut(s) 405, 900, 1763
BfmI CTRYAG 1 cut(s) 44
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 3 cut(s) 573, 576, 1173
BlpI GCTNAGC 2 cut(s) 720, 1039
BlsI GCNGC 3 cut(s) 574, 577, 1174
Bme1390I CCNGG 6 cut(s) 165, 290, 321, 600, 798, 1596
Bme18I GGWCC 2 cut(s) 167, 1145
BmeRI GACNNNNNGTC 1 cut(s) 306
BmeT110I CYCGRG 1 cut(s) 66
BmgBI CACGTC 1 cut(s) 1729
BmgT120I GGNCC 3 cut(s) 167, 287, 1145
BmiI GGNNCC 5 cut(s) 418, 543, 754, 1147, 1414
BmrFI CCNGG 6 cut(s) 165, 290, 321, 600, 798, 1596
BmsI GCATC 4 cut(s) 685, 904, 949, 1347
BmtI GCTAGC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 1734
BplI GAGNNNNNCTC 4 cut(s) 1400, 1432, 1484, 1516
BpmI CTGGAG 2 cut(s) 934, 1119
Bpu1102I GCTNAGC 2 cut(s) 720, 1039
BpuMI CCSGG 2 cut(s) 165, 290
BsaAI YACGTR 1 cut(s) 179
BsaJI CCNNGG 5 cut(s) 275, 599, 796, 1339, 1441
BsaWI WCCGGW 2 cut(s) 964, 1681
BsaXI ACNNNNNCTCC 2 cut(s) 1404, 1434
Bsc4I CCNNNNNNNGG 6 cut(s) 246, 440, 601, 1142, 1559, 1705
Bse1I ACTGG 3 cut(s) 251, 398, 951
BseBI CCWGG 4 cut(s) 321, 600, 798, 1596
BseDI CCNNGG 5 cut(s) 275, 599, 796, 1339, 1441
BseGI GGATG 8 cut(s) 39, 754, 916, 964, 1426, 1437, 1568, 1749
BseLI CCNNNNNNNGG 6 cut(s) 246, 440, 601, 1142, 1559, 1705
BseMII CTCAG 1 cut(s) 711
BseNI ACTGG 3 cut(s) 251, 398, 951
BseRI GAGGAG 2 cut(s) 491, 1692
BseSI GKGCMC 1 cut(s) 1679
BseXI GCAGC 3 cut(s) 562, 584, 1159
BsgI GTGCAG 1 cut(s) 1114
BshFI GGCC 3 cut(s) 288, 594, 623
BshNI GGYRCC 2 cut(s) 541, 752
BsiHKAI GWGCWC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 6 cut(s) 17, 165, 290, 965, 1682, 1706
BslFI GGGAC 3 cut(s) 1052, 1131, 1511
BslI CCNNNNNNNGG 6 cut(s) 246, 440, 601, 1142, 1559, 1705
BsmAI GTCTC 2 cut(s) 1621, 1679
BsmFI GGGAC 3 cut(s) 1052, 1131, 1511
BsnI GGCC 3 cut(s) 288, 594, 623
BsoBI CYCGRG 1 cut(s) 66
Bsp1286I GDGCHC 3 cut(s) 184, 1281, 1679
Bsp143I GATC 2 cut(s) 494, 1522
Bsp1720I GCTNAGC 2 cut(s) 720, 1039
Bsp19I CCATGG 2 cut(s) 275, 1441
BspANI GGCC 3 cut(s) 288, 594, 623
BspCNI CTCAG 1 cut(s) 712
BspLI GGNNCC 5 cut(s) 418, 543, 754, 1147, 1414
BspOI GCTAGC 1 cut(s) 408
BspPI GGATC 2 cut(s) 502, 1517
BspQI GCTCTTC 1 cut(s) 56
BspT107I GGYRCC 2 cut(s) 541, 752
BsrI ACTGG 3 cut(s) 251, 398, 951
BssECI CCNNGG 5 cut(s) 275, 599, 796, 1339, 1441
BssMI GATC 2 cut(s) 494, 1522
BssT1I CCWWGG 3 cut(s) 275, 1339, 1441
Bst2UI CCWGG 4 cut(s) 321, 600, 798, 1596
Bst4CI ACNGT 5 cut(s) 12, 370, 895, 1336, 1378
Bst6I CTCTTC 2 cut(s) 56, 468
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 7 cut(s) 184, 381, 406, 435, 1177, 1224, 1247
BstDEI CTNAG 4 cut(s) 720, 1039, 1089, 1448
BstDSI CCRYGG 2 cut(s) 275, 1441
BstF5I GGATG 8 cut(s) 39, 754, 916, 964, 1426, 1437, 1568, 1749
BstKTI GATC 2 cut(s) 497, 1525
BstMAI GTCTC 2 cut(s) 1621, 1679
BstMBI GATC 2 cut(s) 494, 1522
BstNI CCWGG 4 cut(s) 321, 600, 798, 1596
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 6 cut(s) 163, 288, 319, 598, 796, 1594
BstSFI CTRYAG 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 1679
BstV1I GCAGC 3 cut(s) 562, 584, 1159
BstV2I GAAGAC 1 cut(s) 1734
BstX2I RGATCY 1 cut(s) 494
BstXI CCANNNNNNTGG 1 cut(s) 1602
BstYI RGATCY 1 cut(s) 494
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 3 cut(s) 288, 594, 623
BtgI CCRYGG 2 cut(s) 275, 1441
BtrI CACGTC 1 cut(s) 1729
BtsCI GGATG 8 cut(s) 39, 754, 916, 964, 1426, 1437, 1568, 1749
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 7 cut(s) 184, 381, 406, 435, 1177, 1224, 1247
Cfr13I GGNCC 3 cut(s) 167, 287, 1145
CseI GACGC 1 cut(s) 1168
Csp6I GTAC 1 cut(s) 706
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 4 cut(s) 720, 1039, 1089, 1448
DpnI GATC 2 cut(s) 496, 1524
DpnII GATC 2 cut(s) 494, 1522
DriI GACNNNNNGTC 1 cut(s) 306
EaeI YGGCCR 2 cut(s) 592, 621
Eam1104I CTCTTC 2 cut(s) 56, 468
Eam1105I GACNNNNNGTC 1 cut(s) 306
EarI CTCTTC 2 cut(s) 56, 468
Eco130I CCWWGG 3 cut(s) 275, 1339, 1441
Eco24I GRGCYC 1 cut(s) 1281
Eco47I GGWCC 2 cut(s) 167, 1145
Eco57I CTGAAG 1 cut(s) 1728
Eco88I CYCGRG 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 1145
EcoRII CCWGG 4 cut(s) 319, 598, 796, 1594
EcoT14I CCWWGG 3 cut(s) 275, 1339, 1441
EcoT38I GRGCYC 1 cut(s) 1281
ErhI CCWWGG 3 cut(s) 275, 1339, 1441
FaqI GGGAC 3 cut(s) 1052, 1131, 1511
FauNDI CATATG 1 cut(s) 1620
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 3 cut(s) 573, 576, 1173
FokI GGATG 8 cut(s) 26, 761, 923, 971, 1413, 1424, 1575, 1736
FriOI GRGCYC 1 cut(s) 1281
Fsp4HI GCNGC 3 cut(s) 573, 576, 1173
FspBI CTAG 3 cut(s) 405, 900, 1763
GluI GCNGC 3 cut(s) 573, 576, 1173
GsuI CTGGAG 2 cut(s) 934, 1119
HaeIII GGCC 3 cut(s) 288, 594, 623
HapII CCGG 6 cut(s) 17, 165, 290, 965, 1682, 1706
HgaI GACGC 1 cut(s) 1168
HincII GTYRAC 3 cut(s) 6, 1159, 1183
HindII GTYRAC 3 cut(s) 6, 1159, 1183
HindIII AAGCTT 2 cut(s) 134, 1036
HpaII CCGG 6 cut(s) 17, 165, 290, 965, 1682, 1706
HphI GGTGA 4 cut(s) 229, 309, 1291, 1363
Hpy166II GTNNAC 7 cut(s) 6, 109, 151, 214, 649, 1159, 1183
Hpy188I TCNGA 6 cut(s) 675, 681, 1210, 1518, 1577, 1754
Hpy188III TCNNGA 4 cut(s) 170, 908, 974, 1136
Hpy8I GTNNAC 7 cut(s) 6, 109, 151, 214, 649, 1159, 1183
Hpy99I CGWCG 1 cut(s) 1730
HpyAV CCTTC 4 cut(s) 356, 992, 1519, 1728
HpyCH4III ACNGT 5 cut(s) 12, 370, 895, 1336, 1378
HpyCH4IV ACGT 5 cut(s) 178, 662, 1083, 1541, 1728
HpyCH4V TGCA 9 cut(s) 79, 698, 713, 863, 923, 1131, 1175, 1222, 1435
HpyF3I CTNAG 4 cut(s) 720, 1039, 1089, 1448
HpySE526I ACGT 5 cut(s) 178, 662, 1083, 1541, 1728
Kzo9I GATC 2 cut(s) 494, 1522
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 3 cut(s) 967, 1412, 1701
Lsp1109I GCAGC 3 cut(s) 562, 584, 1159
LweI GCATC 4 cut(s) 685, 904, 949, 1347
MaeI CTAG 3 cut(s) 405, 900, 1763
MaeII ACGT 5 cut(s) 178, 662, 1083, 1541, 1728
MaeIII GTNAC 6 cut(s) 298, 389, 848, 1079, 1084, 1351
MalI GATC 2 cut(s) 496, 1524
MboI GATC 2 cut(s) 494, 1522
MboII GAAGA 7 cut(s) 43, 371, 485, 659, 662, 1678, 1734
MfeI CAATTG 2 cut(s) 714, 885
MflI RGATCY 1 cut(s) 494
MhlI GDGCHC 3 cut(s) 184, 1281, 1679
MlsI TGGCCA 1 cut(s) 594
MluNI TGGCCA 1 cut(s) 594
MlyI GAGTC 5 cut(s) 137, 832, 1493, 1658, 1748
MmeI TCCRAC 2 cut(s) 1140, 1716
Mox20I TGGCCA 1 cut(s) 594
MroXI GAANNNNTTC 2 cut(s) 981, 1484
MscI TGGCCA 1 cut(s) 594
MseI TTAA 8 cut(s) 99, 207, 345, 642, 1200, 1293, 1331, 1777
MslI CAYNNNNRTG 2 cut(s) 249, 1440
Msp20I TGGCCA 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 6 cut(s) 17, 165, 290, 965, 1682, 1706
MspR9I CCNGG 6 cut(s) 165, 290, 321, 600, 798, 1596
MunI CAATTG 2 cut(s) 714, 885
MvaI CCWGG 4 cut(s) 321, 600, 798, 1596
NciI CCSGG 2 cut(s) 165, 290
NcoI CCATGG 2 cut(s) 275, 1441
NdeI CATATG 1 cut(s) 1620
NdeII GATC 2 cut(s) 494, 1522
NheI GCTAGC 1 cut(s) 404
NlaIV GGNNCC 5 cut(s) 418, 543, 754, 1147, 1414
NmeAIII GCCGAG 2 cut(s) 599, 1516
NmuCI GTSAC 4 cut(s) 298, 389, 1079, 1351
NspI RCATGY 1 cut(s) 383
PaeI GCATGC 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 56
PdmI GAANNNNTTC 2 cut(s) 981, 1484
PfeI GAWTC 5 cut(s) 676, 773, 1211, 1423, 1578
PflMI CCANNNNNTGG 2 cut(s) 246, 1559
PkrI GCNGC 3 cut(s) 574, 577, 1174
PleI GAGTC 5 cut(s) 136, 832, 1493, 1657, 1747
PpsI GAGTC 5 cut(s) 136, 832, 1493, 1657, 1747
Ppu21I YACGTR 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 1145
PshBI ATTAAT 1 cut(s) 345
Psp1406I AACGTT 1 cut(s) 1541
Psp5II RGGWCCY 1 cut(s) 1145
Psp6I CCWGG 4 cut(s) 319, 598, 796, 1594
PspGI CCWGG 4 cut(s) 319, 598, 796, 1594
PspN4I GGNNCC 5 cut(s) 418, 543, 754, 1147, 1414
PspPI GGNCC 3 cut(s) 167, 287, 1145
PspPPI RGGWCCY 1 cut(s) 1145
PspXI VCTCGAGB 1 cut(s) 66
PsrI GAACNNNNNNTAC 2 cut(s) 316, 348
PsuI RGATCY 1 cut(s) 494
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
RseI CAYNNNNRTG 2 cut(s) 249, 1440
SalI GTCGAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 8 cut(s) 99, 207, 345, 642, 1200, 1293, 1331, 1777
SatI GCNGC 3 cut(s) 573, 576, 1173
Sau3AI GATC 2 cut(s) 494, 1522
Sau96I GGNCC 3 cut(s) 167, 287, 1145
SchI GAGTC 5 cut(s) 137, 832, 1493, 1658, 1748
ScrFI CCNGG 6 cut(s) 165, 290, 321, 600, 798, 1596
SduI GDGCHC 3 cut(s) 184, 1281, 1679
SfaNI GCATC 4 cut(s) 685, 904, 949, 1347
SfcI CTRYAG 1 cut(s) 44
Sfr274I CTCGAG 1 cut(s) 66
SinI GGWCC 2 cut(s) 167, 1145
SlaI CTCGAG 1 cut(s) 66
SmiMI CAYNNNNRTG 2 cut(s) 249, 1440
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SphI GCATGC 1 cut(s) 383
SspI AATATT 2 cut(s) 832, 1189
SspMI CTAG 3 cut(s) 405, 900, 1763
StyD4I CCNGG 6 cut(s) 163, 288, 319, 598, 796, 1594
StyI CCWWGG 3 cut(s) 275, 1339, 1441
TaaI ACNGT 5 cut(s) 12, 370, 895, 1336, 1378
TaiI ACGT 5 cut(s) 181, 665, 1086, 1544, 1731
TaqI TCGA 3 cut(s) 5, 67, 836
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 5 cut(s) 676, 773, 1211, 1423, 1578
Tru1I TTAA 8 cut(s) 99, 207, 345, 642, 1200, 1293, 1331, 1777
Tru9I TTAA 8 cut(s) 99, 207, 345, 642, 1200, 1293, 1331, 1777
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 4 cut(s) 298, 389, 1079, 1351
TseI GCWGC 3 cut(s) 572, 575, 1172
Tsp45I GTSAC 4 cut(s) 298, 389, 1079, 1351
TspDTI ATGAA 8 cut(s) 43, 82, 401, 486, 618, 1009, 1386, 1534
TspGWI ACGGA 1 cut(s) 1408
TspRI CASTG 1 cut(s) 251
Van91I CCANNNNNTGG 2 cut(s) 246, 1559
VpaK11BI GGWCC 2 cut(s) 167, 1145
VspI ATTAAT 1 cut(s) 345
XapI RAATTY 3 cut(s) 293, 328, 511
XceI RCATGY 1 cut(s) 383
XcmI CCANNNNNNNNNTGG 1 cut(s) 1560
XhoI CTCGAG 1 cut(s) 66
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 981, 1484
XspI CTAG 3 cut(s) 405, 900, 1763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.