Rorug04G0231100

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000320
Physical Location & Seq
Reverse (-)
39595724 .. 39599007
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0231100.1

Sequence Viewer

Length: 711 bp
ATGTTGGGACTGTTCAGCAGCGCGATCGTGTCCCCTCCCGACGAGCTCGTCGCCGCCGGCAGCCGGACGCCGTCGCCGAAGACCTCGGCGAATGCACTGATCAACCGCTTCGTCGAGAGCAATGCCTCCGCCGTGTCCATTCAGGTCGGCGACCACGTCCAGCTGGCCTACAGCCACGACCACGAGTCCCCGATACAACCGAGGTCGTTTGCTGTTAAGGATGAGGTATTCTGCTTGTTTGAGGGAGCACTTGACAACTTGGGAAGCTTGAGGCAGCAATATGGCCTGGCCAAGTCTGCAAATGAAGTGATTTTGGTCATTGAGGCTTACAAGGCGCTTCGCGATCGGGCACCTTACCCACCCAACCATGTTGTTGGCCATCTCCACGGAAATTTTGCTTTCATTGTATTTGACAAGTCCACCTCCACCGTGTTTGTTGCTTCTGACCAATTTGGCAAGGTCCCTCTCTCCTGGGGAATCACTGCTGATGGATATGTGGCCTTTGCTGATGATGCAGAATTGCTTAAAGGTGCTTGTGGCAAGTCACTTGCTTCATTCCCTCAAGGGTGTTTCTACTCCACAACTGTTGGAGGACTGAGAAGCTATGAGAATCCTAAAAATGTAATCACTGCTGTACCGGCTACTGATGAAGAGATCTGGGGTGCAACATTTAAGGTTGAAGGGCCATCAGTTCTTGCAGCCACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

236

Amino Acids

25.17

Weight (kDa)

5.48

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3700 PF12481 2 - 226 1.1e-93 Aluminium induced protein
GATase_6 PF13522 52 - 170 1.7e-10 Glutamine amidotransferase domain
GATase_7 PF13537 54 - 173 3.5e-11 Glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 349
AccII CGCG 2 cut(s) 23, 342
AciI CCGC 3 cut(s) 54, 106, 129
AcoI YGGCCR 2 cut(s) 288, 376
AcsI RAATTY 1 cut(s) 391
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 1 cut(s) 636
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 1 cut(s) 680
AhdI GACNNNNNGTC 1 cut(s) 184
AjiI CACGTC 1 cut(s) 157
AjnI CCWGG 2 cut(s) 285, 470
AluBI AGCT 4 cut(s) 46, 163, 267, 603
AluI AGCT 4 cut(s) 46, 163, 267, 603
Alw21I GWGCWC 2 cut(s) 48, 250
AoxI GGCC 6 cut(s) 165, 283, 288, 376, 498, 683
ApeKI GCWGC 4 cut(s) 18, 60, 274, 698
ApoI RAATTY 1 cut(s) 391
AspLEI GCGC 2 cut(s) 23, 337
AspS9I GGNCC 2 cut(s) 460, 683
AvaII GGWCC 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 352
BaeI ACNNNNGTAYC 2 cut(s) 618, 651
BalI TGGCCA 2 cut(s) 290, 378
BanI GGYRCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 48
BauI CACGAG 1 cut(s) 182
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 48, 250
BbvI GCAGC 3 cut(s) 30, 72, 286
BccI CCATC 3 cut(s) 387, 482, 694
BceAI ACGGC 2 cut(s) 55, 116
BcgI CGANNNNNNTGC 4 cut(s) 7, 41, 104, 138
BciT130I CCWGG 2 cut(s) 287, 472
BclI TGATCA 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 338
BglII AGATCT 1 cut(s) 654
BisI GCNGC 5 cut(s) 19, 54, 61, 275, 699
BlsI GCNGC 5 cut(s) 20, 55, 62, 276, 700
Bme1390I CCNGG 2 cut(s) 287, 472
Bme18I GGWCC 1 cut(s) 460
BmeRI GACNNNNNGTC 1 cut(s) 184
BmgBI CACGTC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 460, 683
BmiI GGNNCC 2 cut(s) 351, 462
BmrFI CCNGG 2 cut(s) 287, 472
BmsI GCATC 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 86
BpuEI CTTGAG 2 cut(s) 289, 546
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 4 cut(s) 84, 200, 385, 471
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse118I RCCGGY 2 cut(s) 56, 637
Bse3DI GCAATG 1 cut(s) 127
BseBI CCWGG 2 cut(s) 287, 472
BseDI CCNNGG 4 cut(s) 84, 200, 385, 471
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 587
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 3 cut(s) 30, 72, 286
Bsh1236I CGCG 2 cut(s) 23, 342
Bsh1285I CGRYCG 2 cut(s) 27, 346
BshFI GGCC 6 cut(s) 167, 285, 290, 378, 500, 685
BshNI GGYRCC 1 cut(s) 349
BsiEI CGRYCG 2 cut(s) 27, 346
BsiHKAI GWGCWC 2 cut(s) 48, 250
BsiSI CCGG 3 cut(s) 57, 64, 638
BslFI GGGAC 4 cut(s) 16, 21, 172, 446
BslI CCNNNNNNNGG 1 cut(s) 63
BsmFI GGGAC 4 cut(s) 16, 21, 172, 446
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 6 cut(s) 167, 285, 290, 378, 500, 685
Bsp1286I GDGCHC 3 cut(s) 48, 250, 352
Bsp143I GATC 4 cut(s) 24, 99, 343, 654
Bsp68I TCGCGA 1 cut(s) 342
BspACI CCGC 3 cut(s) 54, 106, 129
BspANI GGCC 6 cut(s) 167, 285, 290, 378, 500, 685
BspCNI CTCAG 1 cut(s) 588
BspFNI CGCG 2 cut(s) 23, 342
BspLI GGNNCC 2 cut(s) 351, 462
BspT107I GGYRCC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 127
BsrFI RCCGGY 2 cut(s) 56, 637
BssAI RCCGGY 2 cut(s) 56, 637
BssECI CCNNGG 4 cut(s) 84, 200, 385, 471
BssMI GATC 4 cut(s) 24, 99, 343, 654
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 287, 472
Bst4CI ACNGT 3 cut(s) 12, 430, 586
Bst6I CTCTTC 1 cut(s) 645
BstACI GRCGYC 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 58, 165
BstDEI CTNAG 1 cut(s) 596
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 2 cut(s) 23, 342
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 2 cut(s) 23, 337
BstKTI GATC 4 cut(s) 27, 102, 346, 657
BstMBI GATC 4 cut(s) 24, 99, 343, 654
BstMCI CGRYCG 2 cut(s) 27, 346
BstMWI GCNNNNNNNGC 4 cut(s) 296, 332, 512, 638
BstNI CCWGG 2 cut(s) 287, 472
BstSCI CCNGG 2 cut(s) 285, 470
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 352
BstUI CGCG 2 cut(s) 23, 342
BstV1I GCAGC 3 cut(s) 30, 72, 286
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 654
BstXI CCANNNNNNTGG 1 cut(s) 374
BstYI RGATCY 1 cut(s) 654
BsuRI GGCC 6 cut(s) 167, 285, 290, 378, 500, 685
BtgI CCRYGG 1 cut(s) 385
BtrI CACGTC 1 cut(s) 157
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 2 cut(s) 480, 627
BtsIMutI CAGTG 3 cut(s) 95, 480, 627
BtuMI TCGCGA 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 58, 165
CfoI GCGC 2 cut(s) 23, 337
Cfr10I RCCGGY 2 cut(s) 56, 637
Cfr13I GGNCC 2 cut(s) 460, 683
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 635
CspCI CAANNNNNGTGG 4 cut(s) 415, 450, 568, 603
CviAII CATG 1 cut(s) 368
CviQI GTAC 1 cut(s) 635
DdeI CTNAG 1 cut(s) 596
DpnI GATC 4 cut(s) 26, 101, 345, 656
DpnII GATC 4 cut(s) 24, 99, 343, 654
DrdI GACNNNNNNGTC 1 cut(s) 47
DriI GACNNNNNGTC 1 cut(s) 184
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 2 cut(s) 288, 376
Eam1104I CTCTTC 1 cut(s) 645
Eam1105I GACNNNNNGTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 645
EciI GGCGGA 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 460
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 460
EcoRII CCWGG 2 cut(s) 285, 470
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 1 cut(s) 371
FaiI YATR 4 cut(s) 282, 369, 495, 606
FaqI GGGAC 4 cut(s) 16, 21, 172, 446
FatI CATG 1 cut(s) 367
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 5 cut(s) 19, 54, 61, 275, 699
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 5 cut(s) 19, 54, 61, 275, 699
GlaI GCGC 2 cut(s) 22, 336
GluI GCNGC 5 cut(s) 19, 54, 61, 275, 699
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 6 cut(s) 167, 285, 290, 378, 500, 685
HapII CCGG 3 cut(s) 57, 64, 638
HgaI GACGC 1 cut(s) 76
HhaI GCGC 2 cut(s) 23, 337
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 1 cut(s) 371
Hin6I GCGC 2 cut(s) 21, 335
HinP1I GCGC 2 cut(s) 21, 335
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 3 cut(s) 185, 477, 610
HpaII CCGG 3 cut(s) 57, 64, 638
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 3 cut(s) 38, 115, 341
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 4 cut(s) 44, 53, 76, 116
HpyAV CCTTC 1 cut(s) 674
HpyCH4III ACNGT 3 cut(s) 12, 430, 586
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 5 cut(s) 95, 299, 515, 665, 698
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 332, 512, 638
HpyF3I CTNAG 1 cut(s) 596
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 1 cut(s) 371
HspAI GCGC 2 cut(s) 21, 335
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 4 cut(s) 24, 99, 343, 654
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 3 cut(s) 30, 72, 286
LweI GCATC 1 cut(s) 502
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 543
MalI GATC 4 cut(s) 26, 101, 345, 656
MboI GATC 4 cut(s) 24, 99, 343, 654
MboII GAAGA 2 cut(s) 91, 662
MflI RGATCY 1 cut(s) 654
MhlI GDGCHC 3 cut(s) 48, 250, 352
MlsI TGGCCA 2 cut(s) 290, 378
MluCI AATT 3 cut(s) 391, 449, 518
MluNI TGGCCA 2 cut(s) 290, 378
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 568
Mox20I TGGCCA 2 cut(s) 290, 378
MroNI GCCGGC 1 cut(s) 56
MscI TGGCCA 2 cut(s) 290, 378
MseI TTAA 3 cut(s) 216, 525, 672
Msp20I TGGCCA 2 cut(s) 290, 378
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 3 cut(s) 57, 64, 638
MspR9I CCNGG 2 cut(s) 287, 472
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 2 cut(s) 287, 472
MvnI CGCG 2 cut(s) 23, 342
MwoI GCNNNNNNNGC 4 cut(s) 296, 332, 512, 638
NaeI GCCGGC 1 cut(s) 58
NdeII GATC 4 cut(s) 24, 99, 343, 654
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 2 cut(s) 351, 462
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 543
NruI TCGCGA 1 cut(s) 342
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 153
PctI GAATGC 1 cut(s) 97
PdiI GCCGGC 1 cut(s) 58
PfeI GAWTC 2 cut(s) 477, 610
PflFI GACNNNGTC 2 cut(s) 70, 155
PkrI GCNGC 5 cut(s) 20, 55, 62, 276, 700
Ple19I CGATCG 2 cut(s) 27, 346
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PpuMI RGGWCCY 1 cut(s) 460
Psp124BI GAGCTC 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 460
Psp6I CCWGG 2 cut(s) 285, 470
PspGI CCWGG 2 cut(s) 285, 470
PspN4I GGNNCC 2 cut(s) 351, 462
PspPI GGNCC 2 cut(s) 460, 683
PspPPI RGGWCCY 1 cut(s) 460
PsuI RGATCY 1 cut(s) 654
PsyI GACNNNGTC 2 cut(s) 70, 155
PvuI CGATCG 2 cut(s) 27, 346
PvuII CAGCTG 1 cut(s) 163
RruI TCGCGA 1 cut(s) 342
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 3 cut(s) 216, 525, 672
SatI GCNGC 5 cut(s) 19, 54, 61, 275, 699
Sau3AI GATC 4 cut(s) 24, 99, 343, 654
Sau96I GGNCC 2 cut(s) 460, 683
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 287, 472
SduI GDGCHC 3 cut(s) 48, 250, 352
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 1 cut(s) 169
SinI GGWCC 1 cut(s) 460
SmlI CTYRAG 2 cut(s) 268, 561
SmoI CTYRAG 2 cut(s) 268, 561
Sse9I AATT 3 cut(s) 391, 449, 518
SsiI CCGC 3 cut(s) 54, 106, 129
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 2 cut(s) 285, 470
TaaI ACNGT 3 cut(s) 12, 430, 586
TaiI ACGT 1 cut(s) 159
TaqI TCGA 1 cut(s) 114
TasI AATT 3 cut(s) 391, 449, 518
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 477, 610
Tru1I TTAA 3 cut(s) 216, 525, 672
Tru9I TTAA 3 cut(s) 216, 525, 672
TscAI CASTG 3 cut(s) 102, 487, 634
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 4 cut(s) 18, 60, 274, 698
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 4 cut(s) 318, 391, 543, 663
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 3 cut(s) 102, 487, 634
Tth111I GACNNNGTC 2 cut(s) 70, 155
VpaK11BI GGWCC 1 cut(s) 460
XapI RAATTY 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.