Rorug06G0296400

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000320
Physical Location & Seq
Reverse (-)
44917306 .. 44921371
4066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0296400.1

Sequence Viewer

Length: 912 bp
ATGGTTGCTACTTTGAATTTTGAAATTGGATTGTTGCTGCAATTGTTCATGTTTAGATCTGCGGTACCACTTGTCAAGCCTCATAATTTCGTGCACGCTGATGATTATTTGGTTTTGGAGGATGAAAGTGGAAGAGTTAAGCTTGGTGGGACCGTGCTTTCACCATCTGTATATGTAACAGGGAATATTGTTGGCTTGCACGGAAAAGAGACCGGTGCAGGTGAATTCTTAGTACTAGATGTTCTCGAGGCTGGCTTACCACCCCAGATTGAGCTGCCACTTAAATCAAGAAAGTCACAGGAAACTAAAGTCACAGGTGGAGGCATCTGGCACCAACAGCACCAAATACTCTTGATAGTTTTAAAAATTCCAGGTTTGGCTGAAAATATTTTCAGTCATCTCCTAACTGGTCTGGGTGCTGGTTTCTTTGCAGTATCTACTGGGTCTCCAGTTGATGTGTGGAAGAGAAGAGGGAAGGCAGCATATACGCAGCACCATATTGATGCAATTAGAACAGAGTGGGCAAAATTTGTTGTTAAAACATATATGTTGCTTTTGGTTTCGATTGTGGTTGATCCGACTATGAATTTGCACTTTGGTTCCAAAGTTGGACATGACAATGAGGAGGCCTCGCGGCTTCCTTGTCTTTCGAGATGTTCGACTTTTTTAGGCAAAAGCAACCCCTTCCTTTCTCTCCTTCCATCTGATTTTGGTGTTGGCTATTCTTGCCGAGATGTGGATGCCGGTCTTGTTCGGTATAATTGCTCTAAGAATTTTGTGGGATCCAGGGGTGGTGGCATGGAATCTGGTTGGCTTATGGGTTGGAGAACTCTGGTGGCTATGGTGGCTGCACTGGATCGAGATGACCTTGATACAGACGGCGCCGACGTCGCTGGTCAGTTTCTAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

303

Amino Acids

32.9

Weight (kDa)

6.36

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_D_N PF18018 21 - 81 3.9e-12 DNA polymerase delta subunit OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 209
AatII GACGTC 1 cut(s) 891
Acc36I ACCTGC 1 cut(s) 209
Acc65I GGTACC 1 cut(s) 64
AccB1I GGYRCC 3 cut(s) 64, 330, 881
AccII CGCG 1 cut(s) 634
AciI CCGC 2 cut(s) 62, 634
AclWI GGATC 4 cut(s) 569, 777, 790, 864
AcsI RAATTY 6 cut(s) 16, 224, 366, 527, 586, 772
AcyI GRCGYC 2 cut(s) 882, 888
AfaI GTAC 2 cut(s) 66, 234
AfiI CCNNNNNNNGG 1 cut(s) 736
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 2 cut(s) 16, 23
AjnI CCWGG 2 cut(s) 370, 785
AluBI AGCT 2 cut(s) 142, 274
AluI AGCT 2 cut(s) 142, 274
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 2 cut(s) 203, 450
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 4 cut(s) 569, 777, 790, 864
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 1 cut(s) 627
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 5 cut(s) 37, 274, 479, 490, 848
ApoI RAATTY 6 cut(s) 16, 224, 366, 527, 586, 772
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
AsiGI ACCGGT 1 cut(s) 212
Asp718I GGTACC 1 cut(s) 64
AspLEI GCGC 1 cut(s) 884
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 153, 233
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 150
BaeGI GKGCMC 1 cut(s) 96
BamHI GGATCC 1 cut(s) 782
BanI GGYRCC 3 cut(s) 64, 330, 881
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 5 cut(s) 24, 261, 491, 502, 835
BccI CCATC 2 cut(s) 172, 709
BceAI ACGGC 1 cut(s) 895
BciT130I CCWGG 2 cut(s) 372, 787
BcoDI GTCTC 2 cut(s) 203, 450
BfaI CTAG 2 cut(s) 236, 905
BfoI RGCGCY 1 cut(s) 885
BfuAI ACCTGC 1 cut(s) 209
BglII AGATCT 1 cut(s) 56
BisI GCNGC 6 cut(s) 38, 275, 480, 491, 635, 849
BlsI GCNGC 6 cut(s) 39, 276, 481, 492, 636, 850
BmcAI AGTACT 1 cut(s) 234
Bme1390I CCNGG 2 cut(s) 372, 787
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 6 cut(s) 66, 151, 332, 601, 784, 883
BmrFI CCNGG 2 cut(s) 372, 787
BmrI ACTGGG 1 cut(s) 450
BmsI GCATC 3 cut(s) 333, 493, 730
BmuI ACTGGG 1 cut(s) 450
BplI GAGNNNNNCTC 2 cut(s) 614, 646
BpmI CTGGAG 1 cut(s) 432
BsaHI GRCGYC 2 cut(s) 882, 888
BsaI GGTCTC 2 cut(s) 203, 450
BsaJI CCNNGG 1 cut(s) 786
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 736
Bse118I RCCGGY 2 cut(s) 212, 743
Bse1I ACTGG 4 cut(s) 412, 445, 449, 858
BseBI CCWGG 2 cut(s) 372, 787
BseDI CCNNGG 1 cut(s) 786
BseGI GGATG 2 cut(s) 127, 745
BseLI CCNNNNNNNGG 1 cut(s) 736
BseNI ACTGG 4 cut(s) 412, 445, 449, 858
BseRI GAGGAG 1 cut(s) 638
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 5 cut(s) 24, 261, 491, 502, 835
BsgI GTGCAG 2 cut(s) 237, 834
Bsh1236I CGCG 1 cut(s) 634
BshFI GGCC 1 cut(s) 629
BshNI GGYRCC 3 cut(s) 64, 330, 881
BshTI ACCGGT 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 2 cut(s) 213, 744
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 736
BsmAI GTCTC 2 cut(s) 203, 450
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 629
Bso31I GGTCTC 2 cut(s) 203, 450
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 4 cut(s) 56, 574, 782, 856
BspACI CCGC 2 cut(s) 62, 634
BspANI GGCC 1 cut(s) 629
BspFNI CGCG 1 cut(s) 634
BspLI GGNNCC 6 cut(s) 66, 151, 332, 601, 784, 883
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 4 cut(s) 569, 777, 790, 864
BspT107I GGYRCC 3 cut(s) 64, 330, 881
BspTNI GGTCTC 2 cut(s) 203, 450
BsrFI RCCGGY 2 cut(s) 212, 743
BsrI ACTGG 4 cut(s) 412, 445, 449, 858
BssAI RCCGGY 2 cut(s) 212, 743
BssECI CCNNGG 1 cut(s) 786
BssMI GATC 4 cut(s) 56, 574, 782, 856
BssNI GRCGYC 2 cut(s) 882, 888
Bst2UI CCWGG 2 cut(s) 372, 787
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 3 cut(s) 127, 458, 463
BstACI GRCGYC 2 cut(s) 882, 888
BstC8I GCNNGC 3 cut(s) 96, 197, 253
BstDEI CTNAG 2 cut(s) 229, 768
BstF5I GGATG 2 cut(s) 127, 745
BstFNI CGCG 1 cut(s) 634
BstH2I RGCGCY 1 cut(s) 885
BstHHI GCGC 1 cut(s) 884
BstKTI GATC 4 cut(s) 59, 577, 785, 859
BstMAI GTCTC 2 cut(s) 203, 450
BstMBI GATC 4 cut(s) 56, 574, 782, 856
BstMWI GCNNNNNNNGC 4 cut(s) 337, 726, 845, 890
BstNI CCWGG 2 cut(s) 372, 787
BstSCI CCNGG 2 cut(s) 370, 785
BstSLI GKGCMC 1 cut(s) 96
BstUI CGCG 1 cut(s) 634
BstV1I GCAGC 5 cut(s) 24, 261, 491, 502, 835
BstX2I RGATCY 2 cut(s) 56, 782
BstYI RGATCY 2 cut(s) 56, 782
BsuRI GGCC 1 cut(s) 629
BtsCI GGATG 2 cut(s) 127, 745
BtsIMutI CAGTG 1 cut(s) 851
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 3 cut(s) 96, 197, 253
CfoI GCGC 1 cut(s) 884
Cfr10I RCCGGY 2 cut(s) 212, 743
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 65, 233
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 3 cut(s) 49, 614, 799
CviQI GTAC 2 cut(s) 65, 233
DdeI CTNAG 2 cut(s) 229, 768
DinI GGCGCC 1 cut(s) 883
DpnI GATC 4 cut(s) 58, 576, 784, 858
DpnII GATC 4 cut(s) 56, 574, 782, 856
DraI TTTAAA 1 cut(s) 363
Eam1104I CTCTTC 3 cut(s) 127, 458, 463
EarI CTCTTC 3 cut(s) 127, 458, 463
Eco147I AGGCCT 1 cut(s) 629
Eco31I GGTCTC 2 cut(s) 203, 450
Eco47I GGWCC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 245
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 370, 785
EgeI GGCGCC 1 cut(s) 883
EheI GGCGCC 1 cut(s) 883
FaeI CATG 3 cut(s) 52, 617, 802
FaqI GGGAC 1 cut(s) 163
FatI CATG 3 cut(s) 48, 613, 798
Fnu4HI GCNGC 6 cut(s) 38, 275, 480, 491, 635, 849
FokI GGATG 2 cut(s) 134, 752
Fsp4HI GCNGC 6 cut(s) 38, 275, 480, 491, 635, 849
FspBI CTAG 2 cut(s) 236, 905
GlaI GCGC 1 cut(s) 883
GluI GCNGC 6 cut(s) 38, 275, 480, 491, 635, 849
GsuI CTGGAG 1 cut(s) 432
HaeII RGCGCY 1 cut(s) 885
HaeIII GGCC 1 cut(s) 629
HapII CCGG 2 cut(s) 213, 744
HhaI GCGC 1 cut(s) 884
Hin1I GRCGYC 2 cut(s) 882, 888
Hin1II CATG 3 cut(s) 52, 617, 802
Hin6I GCGC 1 cut(s) 882
HinP1I GCGC 1 cut(s) 882
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 803
HpaII CCGG 2 cut(s) 213, 744
HphI GGTGA 2 cut(s) 153, 233
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 579, 706
Hpy188III TCNNGA 5 cut(s) 245, 288, 352, 651, 860
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 2 cut(s) 890, 893
HpyAV CCTTC 3 cut(s) 469, 694, 707
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 888
HpyCH4V TGCA 8 cut(s) 40, 94, 199, 218, 431, 506, 592, 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 726, 845, 890
HpyF3I CTNAG 2 cut(s) 229, 768
HpySE526I ACGT 1 cut(s) 888
Hsp92I GRCGYC 2 cut(s) 882, 888
Hsp92II CATG 3 cut(s) 52, 617, 802
HspAI GCGC 1 cut(s) 882
KasI GGCGCC 1 cut(s) 881
KpnI GGTACC 1 cut(s) 68
Kzo9I GATC 4 cut(s) 56, 574, 782, 856
Lsp1109I GCAGC 5 cut(s) 24, 261, 491, 502, 835
LweI GCATC 3 cut(s) 333, 493, 730
MaeI CTAG 2 cut(s) 236, 905
MaeII ACGT 1 cut(s) 888
MaeIII GTNAC 3 cut(s) 175, 294, 310
MalI GATC 4 cut(s) 58, 576, 784, 858
MboI GATC 4 cut(s) 56, 574, 782, 856
MboII GAAGA 3 cut(s) 144, 475, 480
MfeI CAATTG 1 cut(s) 41
MflI RGATCY 2 cut(s) 56, 782
MhlI GDGCHC 1 cut(s) 96
Mly113I GGCGCC 1 cut(s) 882
MmeI TCCRAC 3 cut(s) 589, 602, 803
MnlI CCTC 8 cut(s) 90, 112, 241, 314, 464, 616, 619, 640
MseI TTAA 4 cut(s) 138, 282, 362, 537
MslI CAYNNNNRTG 3 cut(s) 99, 501, 618
MspI CCGG 2 cut(s) 213, 744
MspR9I CCNGG 2 cut(s) 372, 787
MunI CAATTG 1 cut(s) 41
MvaI CCWGG 2 cut(s) 372, 787
MvnI CGCG 1 cut(s) 634
MwoI GCNNNNNNNGC 4 cut(s) 337, 726, 845, 890
NarI GGCGCC 1 cut(s) 882
NdeII GATC 4 cut(s) 56, 574, 782, 856
NlaIII CATG 3 cut(s) 52, 617, 802
NlaIV GGNNCC 6 cut(s) 66, 151, 332, 601, 784, 883
NmeAIII GCCGAG 1 cut(s) 755
NmuCI GTSAC 2 cut(s) 294, 310
PaeR7I CTCGAG 1 cut(s) 245
PaqCI CACCTGC 1 cut(s) 209
PceI AGGCCT 1 cut(s) 629
PcsI WCGNNNNNNNCGW 2 cut(s) 656, 885
PfeI GAWTC 1 cut(s) 803
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 6 cut(s) 39, 276, 481, 492, 636, 850
PluTI GGCGCC 1 cut(s) 885
Psp6I CCWGG 2 cut(s) 370, 785
PspGI CCWGG 2 cut(s) 370, 785
PspN4I GGNNCC 6 cut(s) 66, 151, 332, 601, 784, 883
PspPI GGNCC 1 cut(s) 150
PsrI GAACNNNNNNTAC 2 cut(s) 225, 257
PsuI RGATCY 2 cut(s) 56, 782
RsaI GTAC 2 cut(s) 66, 234
RsaNI GTAC 2 cut(s) 65, 233
RseI CAYNNNNRTG 3 cut(s) 99, 501, 618
SaqAI TTAA 4 cut(s) 138, 282, 362, 537
SatI GCNGC 6 cut(s) 38, 275, 480, 491, 635, 849
Sau3AI GATC 4 cut(s) 56, 574, 782, 856
Sau96I GGNCC 1 cut(s) 150
ScaI AGTACT 1 cut(s) 234
ScrFI CCNGG 2 cut(s) 372, 787
SduI GDGCHC 1 cut(s) 96
SetI ASST 8 cut(s) 144, 223, 276, 319, 376, 870, 891, 910
SfaNI GCATC 3 cut(s) 333, 493, 730
SfoI GGCGCC 1 cut(s) 883
Sfr274I CTCGAG 1 cut(s) 245
SinI GGWCC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 245
SmiMI CAYNNNNRTG 3 cut(s) 99, 501, 618
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SseBI AGGCCT 1 cut(s) 629
SsiI CCGC 2 cut(s) 62, 634
SspDI GGCGCC 1 cut(s) 881
SspI AATATT 2 cut(s) 187, 388
SspMI CTAG 2 cut(s) 236, 905
StuI AGGCCT 1 cut(s) 629
StyD4I CCNGG 2 cut(s) 370, 785
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 891
TaqI TCGA 5 cut(s) 246, 563, 650, 659, 859
TatI WGTACW 1 cut(s) 232
TauI GCSGC 1 cut(s) 637
TfiI GAWTC 1 cut(s) 803
Tru1I TTAA 4 cut(s) 138, 282, 362, 537
Tru9I TTAA 4 cut(s) 138, 282, 362, 537
TscAI CASTG 1 cut(s) 858
TseFI GTSAC 2 cut(s) 294, 310
TseI GCWGC 5 cut(s) 37, 274, 479, 490, 848
Tsp45I GTSAC 2 cut(s) 294, 310
TspDTI ATGAA 3 cut(s) 37, 138, 599
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 858
VneI GTGCAC 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 6 cut(s) 16, 224, 366, 527, 586, 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 456
XhoI CTCGAG 1 cut(s) 245
XspI CTAG 2 cut(s) 236, 905
ZraI GACGTC 1 cut(s) 889
ZrmI AGTACT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.