RchiOBHm_Chr7g0238581

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000320
Physical Location & Seq
Reverse (-)
64047126 .. 64055542
8417 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21379

Sequence Viewer

Length: 1797 bp
ATGACACAGATTGTAATATTTCTTCTGCTTATTTTGGAGTTCTTCTCTCTGGTTCAAGGCAGAGTGCATTTCTATGATTTTGTAGTCAGGGAGCACAATTTTACCAGGTTATGTGAAACAAAGAGCATGTTAGTTGTAAATGATCGTTTCCCAGGCCCAGAGATACGAGTTCATAGAGGAGATAAAATTTATGTGAATGTTCAAAATCAAGGAAGCTACGGTTTGACAATTCACTGGCATGGAATAAGGCAGCTAAGAAATCCATGGTCAGATGGTCCTGAGTACATCACACAGTGTCCTATTCAGCCCAGGACAAATTTCACCTACGAAGTCCTATTATCCAAGGAAGAAGGAACTGTCTGGTGGCATGCTCACAGTGATTGGACGCGGGCCAGTGTTCATGGTGCCATTGTCATCTTGCCTGCTGTTGGAACCACATTTCCATTTCCTAAACCTGATGAAGATGAGGTCATCATAATTGCATCCTGGTATAAGGGAGATCTGCAAGCGCGGGTTGATGAGGCTATGGAAGATAACGAGAACTTACCTCATTCTGATGCTTACACCATAAATGGCCAGCCTGGAGATCTTTGTCCTTGCTCAAATGAAGCAACTTACCGTCGGAATGTGGACTACGGCAAGACCTATCTTCTTCGTATAGTCAATGCAAACATTGATGCAGATATTTTCTTTGCAATTGCACAACACAACTTTACTGTGGTTGGACTCGATGGAGCCTATATTAAACCCATTGACACAACCTACATAGTGTTGAGCCCTGGACAAACAATGGATGTTTTGCTTGAAGCAAATCAGGTTCTCGGGCACTATTACATGGCGGGGAGACATTTCTCGAGTGAGAATTTGGCGGTTGTTGACTTTGACCATGCGAATGTTACTGCAATTTTAGAATACAATGGCAACTATACCCATCCGACATCTCCTGTCTTTCCCAGTAATCTTCCGATGTACCACGACTTTGTAGCATCACTGAACTTCACAAACCAAATTAGAAGCTTAGCCATCCCGGAATATGCTGTAAATGTCCCATTAGACAATGAAATTACTACTAGGATGTTTATAACAACTTCCATGAATTCTCTCTATTGTGAAGATTCAAGCTCAGGTTGTGAAACGAAACAAATCAGTGCAAGCGTAAATAATATCAGTTGGGTTAACCCAAGTAGTGATATCTTGCAAGCCTATTACAGAAACATAAGCGGAGTCTACTCAGCAGATTTCCCAGATTATCCACCTTCTTTCTATAACTTCACTGATGAATCGTACTCGATTGATACGGTGTTAACAGTACAAGGGAGAAAGGTTAAGGTGTTAAATTACAATGAATCGGTTGAGATTGTATTTCAGGGAACTAATGTGTTAGACGGCTCTGTGAATCATCCGATGCATTTGCATGGATATAGCTTTTATGTGGTTGGGTATGGCTTTGGAAATTATGACAATGTTACTGACCCCAAAGGGTTTAATTTAGTTGATCCTCCTGAGGTAAATACATTTGCAGTTCCCAAGAATGGATGGTTAGCAATCAGATTCACAGCAAACAATCCAGGGGTGTGGTTTTGGCATTGTCATATGGAGAGACACCTGACTTGGGGTATGGAAGCTGCTTTTATAGTAAAGAATGGGGACACTATTGAGACTAGCATTCGCCAACCTCCAAGTTACATGCCTCCATGTAAGATCCCATTAGATTCTAGTCTAAATAACTTTCAAGAGATTCTACTCAAAAAAAAAAACTTTCAAGAGATTACTAAAAAGAAAGTGGAGTACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

598

Amino Acids

68.04

Weight (kDa)

5.36

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 29 - 141 3.6e-38 Multicopper oxidase
Cu-oxidase PF00394 155 - 308 1.8e-34 Multicopper oxidase
Cu-oxidase_2 PF07731 418 - 549 6.1e-40 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1082
AccB1I GGYRCC 1 cut(s) 404
AccI GTMKAC 1 cut(s) 1227
AccII CGCG 2 cut(s) 388, 511
AciI CCGC 5 cut(s) 388, 511, 839, 869, 1221
AclWI GGATC 2 cut(s) 1490, 1696
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 4 cut(s) 186, 316, 862, 1096
AdeI CACNNNGTG 1 cut(s) 294
AfaI GTAC 5 cut(s) 284, 971, 1286, 1311, 1790
AfiI CCNNNNNNNGG 3 cut(s) 428, 1532, 1612
AgsI TTSAA 6 cut(s) 56, 203, 806, 1119, 1733, 1763
AjnI CCWGG 7 cut(s) 104, 151, 308, 485, 580, 778, 1567
AloI GAACNNNNNNTCC 2 cut(s) 424, 456
AluBI AGCT 6 cut(s) 216, 253, 1017, 1122, 1425, 1625
AluI AGCT 6 cut(s) 216, 253, 1017, 1122, 1425, 1625
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 3 cut(s) 838, 1594, 1652
AlwI GGATC 2 cut(s) 1490, 1696
Ama87I CYCGRG 2 cut(s) 821, 853
AoxI GGCC 3 cut(s) 154, 390, 574
ApeKI GCWGC 2 cut(s) 250, 1625
ApoI RAATTY 4 cut(s) 186, 316, 862, 1096
AspLEI GCGC 1 cut(s) 511
AspS9I GGNCC 3 cut(s) 155, 275, 390
AsuC2I CCSGG 1 cut(s) 1028
AsuHPI GGTGA 1 cut(s) 313
AvaI CYCGRG 2 cut(s) 821, 853
AvaII GGWCC 1 cut(s) 275
AxyI CCTNAGG 1 cut(s) 1503
BaeGI GKGCMC 1 cut(s) 828
BalI TGGCCA 1 cut(s) 576
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 779
BarI GAAGNNNNNNTAC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 262, 1612
BccI CCATC 5 cut(s) 266, 725, 939, 1031, 1530
BceAI ACGGC 2 cut(s) 652, 1402
BcgI CGANNNNNNTGC 2 cut(s) 1393, 1427
BciT130I CCWGG 7 cut(s) 106, 153, 310, 487, 582, 780, 1569
BcnI CCSGG 1 cut(s) 1028
BcoDI GTCTC 3 cut(s) 838, 1594, 1652
BfaI CTAG 3 cut(s) 1071, 1662, 1716
BglII AGATCT 2 cut(s) 499, 586
BisI GCNGC 2 cut(s) 251, 1626
BlpI GCTNAGC 1 cut(s) 1018
BlsI GCNGC 2 cut(s) 252, 1627
Bme1390I CCNGG 8 cut(s) 106, 153, 310, 487, 582, 780, 1028, 1569
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 2 cut(s) 821, 853
BmgT120I GGNCC 3 cut(s) 155, 275, 390
BmiI GGNNCC 3 cut(s) 406, 433, 736
BmrFI CCNGG 8 cut(s) 106, 153, 310, 487, 582, 780, 1028, 1569
BmrI ACTGGG 1 cut(s) 948
BmsI GCATC 5 cut(s) 491, 547, 667, 995, 1395
BmuI ACTGGG 1 cut(s) 948
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpmI CTGGAG 1 cut(s) 603
Bpu10I CCTNAGC 1 cut(s) 1123
Bpu1102I GCTNAGC 1 cut(s) 1018
BpuMI CCSGG 1 cut(s) 1028
BsaJI CCNNGG 6 cut(s) 151, 263, 308, 342, 778, 1568
Bsc4I CCNNNNNNNGG 3 cut(s) 428, 1532, 1612
Bse1I ACTGG 3 cut(s) 239, 393, 954
Bse21I CCTNAGG 1 cut(s) 1503
BseBI CCWGG 7 cut(s) 106, 153, 310, 487, 582, 780, 1569
BseDI CCNNGG 6 cut(s) 151, 263, 308, 342, 778, 1568
BseGI GGATG 7 cut(s) 482, 799, 931, 1023, 1080, 1399, 1541
BseLI CCNNNNNNNGG 3 cut(s) 428, 1532, 1612
BseMII CTCAG 4 cut(s) 270, 1137, 1245, 1494
BseNI ACTGG 3 cut(s) 239, 393, 954
BseRI GAGGAG 1 cut(s) 192
BseSI GKGCMC 1 cut(s) 828
BseXI GCAGC 2 cut(s) 262, 1612
Bsh1236I CGCG 2 cut(s) 388, 511
BshFI GGCC 3 cut(s) 156, 392, 576
BshNI GGYRCC 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 2 cut(s) 821, 853
BsiSI CCGG 1 cut(s) 1028
BslFI GGGAC 2 cut(s) 1031, 1661
BslI CCNNNNNNNGG 3 cut(s) 428, 1532, 1612
BsmAI GTCTC 3 cut(s) 838, 1594, 1652
BsmFI GGGAC 2 cut(s) 1031, 1661
BsmI GAATGC 1 cut(s) 1665
BsnI GGCC 3 cut(s) 156, 392, 576
BsoBI CYCGRG 2 cut(s) 821, 853
Bsp1286I GDGCHC 3 cut(s) 96, 779, 828
Bsp143I GATC 5 cut(s) 142, 499, 586, 1495, 1701
Bsp1720I GCTNAGC 1 cut(s) 1018
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 5 cut(s) 388, 511, 839, 869, 1221
BspANI GGCC 3 cut(s) 156, 392, 576
BspCNI CTCAG 4 cut(s) 271, 1136, 1244, 1495
BspFNI CGCG 2 cut(s) 388, 511
BspLI GGNNCC 3 cut(s) 406, 433, 736
BspPI GGATC 2 cut(s) 1490, 1696
BspT107I GGYRCC 1 cut(s) 404
BsrI ACTGG 3 cut(s) 239, 393, 954
BssECI CCNNGG 6 cut(s) 151, 263, 308, 342, 778, 1568
BssMI GATC 5 cut(s) 142, 499, 586, 1495, 1701
BssT1I CCWWGG 2 cut(s) 263, 342
Bst2UI CCWGG 7 cut(s) 106, 153, 310, 487, 582, 780, 1569
Bst4CI ACNGT 8 cut(s) 221, 294, 358, 377, 620, 718, 1300, 1309
BstC8I GCNNGC 7 cut(s) 369, 390, 423, 507, 578, 1153, 1200
BstDEI CTNAG 6 cut(s) 254, 279, 1018, 1123, 1231, 1503
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 7 cut(s) 482, 799, 931, 1023, 1080, 1399, 1541
BstFNI CGCG 2 cut(s) 388, 511
BstHHI GCGC 1 cut(s) 511
BstKTI GATC 5 cut(s) 145, 502, 589, 1498, 1704
BstMAI GTCTC 3 cut(s) 838, 1594, 1652
BstMBI GATC 5 cut(s) 142, 499, 586, 1495, 1701
BstNI CCWGG 7 cut(s) 106, 153, 310, 487, 582, 780, 1569
BstNSI RCATGY 3 cut(s) 130, 371, 1690
BstSCI CCNGG 8 cut(s) 104, 151, 308, 485, 580, 778, 1026, 1567
BstSLI GKGCMC 1 cut(s) 828
BstUI CGCG 2 cut(s) 388, 511
BstV1I GCAGC 2 cut(s) 262, 1612
BstX2I RGATCY 3 cut(s) 499, 586, 1701
BstXI CCANNNNNNTGG 1 cut(s) 1575
BstYI RGATCY 3 cut(s) 499, 586, 1701
Bsu36I CCTNAGG 1 cut(s) 1503
BsuRI GGCC 3 cut(s) 156, 392, 576
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 7 cut(s) 482, 799, 931, 1023, 1080, 1399, 1541
BtsIMutI CAGTG 7 cut(s) 232, 299, 382, 400, 989, 1153, 1272
Cac8I GCNNGC 7 cut(s) 369, 390, 423, 507, 578, 1153, 1200
CfoI GCGC 1 cut(s) 511
Cfr13I GGNCC 3 cut(s) 155, 275, 390
CseI GACGC 1 cut(s) 394
CsiI ACCWGGT 1 cut(s) 104
Csp6I GTAC 5 cut(s) 283, 970, 1285, 1310, 1789
CviQI GTAC 5 cut(s) 283, 970, 1285, 1310, 1789
DdeI CTNAG 6 cut(s) 254, 279, 1018, 1123, 1231, 1503
DpnI GATC 5 cut(s) 144, 501, 588, 1497, 1703
DpnII GATC 5 cut(s) 142, 499, 586, 1495, 1701
DraIII CACNNNGTG 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 574
Eco130I CCWWGG 2 cut(s) 263, 342
Eco24I GRGCYC 1 cut(s) 779
Eco32I GATATC 1 cut(s) 1192
Eco47I GGWCC 1 cut(s) 275
Eco81I CCTNAGG 1 cut(s) 1503
Eco88I CYCGRG 2 cut(s) 821, 853
EcoRI GAATTC 1 cut(s) 1096
EcoRII CCWGG 7 cut(s) 104, 151, 308, 485, 580, 778, 1567
EcoRV GATATC 1 cut(s) 1192
EcoT14I CCWWGG 2 cut(s) 263, 342
EcoT22I ATGCAT 1 cut(s) 1410
EcoT38I GRGCYC 1 cut(s) 779
ErhI CCWWGG 2 cut(s) 263, 342
FaqI GGGAC 2 cut(s) 1031, 1661
FauI CCCGC 3 cut(s) 381, 504, 832
FauNDI CATATG 1 cut(s) 1593
FblI GTMKAC 1 cut(s) 1227
Fnu4HI GCNGC 2 cut(s) 251, 1626
FokI GGATG 7 cut(s) 469, 806, 918, 1010, 1087, 1386, 1548
FriOI GRGCYC 1 cut(s) 779
Fsp4HI GCNGC 2 cut(s) 251, 1626
FspBI CTAG 3 cut(s) 1071, 1662, 1716
GlaI GCGC 1 cut(s) 510
GluI GCNGC 2 cut(s) 251, 1626
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 3 cut(s) 156, 392, 576
HapII CCGG 1 cut(s) 1028
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 511
Hin6I GCGC 1 cut(s) 509
HinP1I GCGC 1 cut(s) 509
HincII GTYRAC 3 cut(s) 877, 1177, 1305
HindII GTYRAC 3 cut(s) 877, 1177, 1305
HindIII AAGCTT 1 cut(s) 1015
HinfI GANTC 9 cut(s) 726, 1115, 1224, 1280, 1346, 1396, 1551, 1712, 1738
HpaI GTTAAC 2 cut(s) 1177, 1305
HpaII CCGG 1 cut(s) 1028
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 5 cut(s) 631, 877, 1177, 1228, 1305
Hpy188I TCNGA 7 cut(s) 271, 556, 624, 936, 966, 1404, 1550
Hpy188III TCNNGA 5 cut(s) 278, 853, 1502, 1733, 1763
Hpy8I GTNNAC 5 cut(s) 631, 877, 1177, 1228, 1305
Hpy99I CGWCG 1 cut(s) 624
HpyAV CCTTC 2 cut(s) 344, 1266
HpyCH4III ACNGT 8 cut(s) 221, 294, 358, 377, 620, 718, 1300, 1309
HpyF3I CTNAG 6 cut(s) 254, 279, 1018, 1123, 1231, 1503
HspAI GCGC 1 cut(s) 509
KspAI GTTAAC 2 cut(s) 1177, 1305
Kzo9I GATC 5 cut(s) 142, 499, 586, 1495, 1701
LmnI GCTCC 2 cut(s) 91, 734
Lsp1109I GCAGC 2 cut(s) 262, 1612
LweI GCATC 5 cut(s) 491, 547, 667, 995, 1395
MabI ACCWGGT 1 cut(s) 104
MaeI CTAG 3 cut(s) 1071, 1662, 1716
MaeIII GTNAC 3 cut(s) 895, 1465, 1682
MalI GATC 5 cut(s) 144, 501, 588, 1497, 1703
MboI GATC 5 cut(s) 142, 499, 586, 1495, 1701
MboII GAAGA 9 cut(s) 14, 34, 359, 473, 542, 641, 644, 953, 1124
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 3 cut(s) 499, 586, 1701
MhlI GDGCHC 3 cut(s) 96, 779, 828
MlsI TGGCCA 1 cut(s) 576
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 2 cut(s) 720, 1233
MmeI TCCRAC 4 cut(s) 409, 602, 703, 959
MnlI CCTC 8 cut(s) 170, 460, 514, 558, 1498, 1509, 1686, 1701
Mox20I TGGCCA 1 cut(s) 576
Mph1103I ATGCAT 1 cut(s) 1410
MscI TGGCCA 1 cut(s) 576
MseI TTAA 6 cut(s) 744, 1176, 1304, 1326, 1334, 1485
MslI CAYNNNNRTG 5 cut(s) 72, 237, 555, 891, 1413
Msp20I TGGCCA 1 cut(s) 576
MspI CCGG 1 cut(s) 1028
MspR9I CCNGG 8 cut(s) 106, 153, 310, 487, 582, 780, 1028, 1569
MunI CAATTG 1 cut(s) 696
Mva1269I GAATGC 1 cut(s) 1665
MvaI CCWGG 7 cut(s) 106, 153, 310, 487, 582, 780, 1569
MvnI CGCG 2 cut(s) 388, 511
NciI CCSGG 1 cut(s) 1028
NcoI CCATGG 1 cut(s) 263
NdeI CATATG 1 cut(s) 1593
NdeII GATC 5 cut(s) 142, 499, 586, 1495, 1701
NlaIV GGNNCC 3 cut(s) 406, 433, 736
NsiI ATGCAT 1 cut(s) 1410
NspI RCATGY 3 cut(s) 130, 371, 1690
PaeI GCATGC 1 cut(s) 371
PaeR7I CTCGAG 1 cut(s) 853
PctI GAATGC 1 cut(s) 1665
PfeI GAWTC 7 cut(s) 1115, 1280, 1346, 1396, 1551, 1712, 1738
PfoI TCCNGGA 1 cut(s) 1026
PkrI GCNGC 2 cut(s) 252, 1627
PleI GAGTC 2 cut(s) 720, 1232
PpsI GAGTC 2 cut(s) 720, 1232
PsiI TTATAA 1 cut(s) 1082
Psp6I CCWGG 7 cut(s) 104, 151, 308, 485, 580, 778, 1567
PspGI CCWGG 7 cut(s) 104, 151, 308, 485, 580, 778, 1567
PspN4I GGNNCC 3 cut(s) 406, 433, 736
PspPI GGNCC 3 cut(s) 155, 275, 390
PsuI RGATCY 3 cut(s) 499, 586, 1701
RsaI GTAC 5 cut(s) 284, 971, 1286, 1311, 1790
RsaNI GTAC 5 cut(s) 283, 970, 1285, 1310, 1789
RseI CAYNNNNRTG 5 cut(s) 72, 237, 555, 891, 1413
SaqAI TTAA 6 cut(s) 744, 1176, 1304, 1326, 1334, 1485
SatI GCNGC 2 cut(s) 251, 1626
Sau3AI GATC 5 cut(s) 142, 499, 586, 1495, 1701
Sau96I GGNCC 3 cut(s) 155, 275, 390
SchI GAGTC 2 cut(s) 720, 1233
ScrFI CCNGG 8 cut(s) 106, 153, 310, 487, 582, 780, 1028, 1569
SduI GDGCHC 3 cut(s) 96, 779, 828
SexAI ACCWGGT 1 cut(s) 104
SfaNI GCATC 5 cut(s) 491, 547, 667, 995, 1395
Sfr274I CTCGAG 1 cut(s) 853
SinI GGWCC 1 cut(s) 275
SlaI CTCGAG 1 cut(s) 853
SmiMI CAYNNNNRTG 5 cut(s) 72, 237, 555, 891, 1413
SmlI CTYRAG 1 cut(s) 853
SmoI CTYRAG 1 cut(s) 853
SphI GCATGC 1 cut(s) 371
SsiI CCGC 5 cut(s) 388, 511, 839, 869, 1221
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 1071, 1662, 1716
StyD4I CCNGG 8 cut(s) 104, 151, 308, 485, 580, 778, 1026, 1567
StyI CCWWGG 2 cut(s) 263, 342
TaaI ACNGT 8 cut(s) 221, 294, 358, 377, 620, 718, 1300, 1309
TaqI TCGA 3 cut(s) 729, 854, 1289
TatI WGTACW 3 cut(s) 282, 1309, 1788
TfiI GAWTC 7 cut(s) 1115, 1280, 1346, 1396, 1551, 1712, 1738
Tru1I TTAA 6 cut(s) 744, 1176, 1304, 1326, 1334, 1485
Tru9I TTAA 6 cut(s) 744, 1176, 1304, 1326, 1334, 1485
TscAI CASTG 7 cut(s) 239, 299, 382, 400, 996, 1153, 1279
TseI GCWGC 2 cut(s) 250, 1625
TspDTI ATGAA 8 cut(s) 161, 389, 474, 621, 1074, 1109, 1293, 1359
TspRI CASTG 7 cut(s) 239, 299, 382, 400, 996, 1153, 1279
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 4 cut(s) 186, 316, 862, 1096
XceI RCATGY 3 cut(s) 130, 371, 1690
XhoI CTCGAG 1 cut(s) 853
XmiI GTMKAC 1 cut(s) 1227
XspI CTAG 3 cut(s) 1071, 1662, 1716
Zsp2I ATGCAT 1 cut(s) 1410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.