Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Cu-oxidase | PF00394 | 36 - 174 | 7e-31 | Multicopper oxidase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 864 |
| Acc65I | GGTACC | 1 cut(s) | 137 |
| AccB1I | GGYRCC | 1 cut(s) | 137 |
| AccI | GTMKAC | 1 cut(s) | 768 |
| AciI | CCGC | 1 cut(s) | 819 |
| AcoI | YGGCCR | 1 cut(s) | 424 |
| AcsI | RAATTY | 3 cut(s) | 77, 596, 835 |
| AfaI | GTAC | 5 cut(s) | 139, 218, 572, 635, 696 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 807 |
| AgsI | TTSAA | 3 cut(s) | 91, 471, 744 |
| AjnI | CCWGG | 2 cut(s) | 181, 379 |
| AluBI | AGCT | 2 cut(s) | 94, 618 |
| AluI | AGCT | 2 cut(s) | 94, 618 |
| Alw26I | GTCTC | 3 cut(s) | 317, 423, 530 |
| AoxI | GGCC | 1 cut(s) | 424 |
| ApeKI | GCWGC | 3 cut(s) | 178, 584, 587 |
| ApoI | RAATTY | 3 cut(s) | 77, 596, 835 |
| Asp718I | GGTACC | 1 cut(s) | 137 |
| BalI | TGGCCA | 1 cut(s) | 426 |
| BanI | GGYRCC | 1 cut(s) | 137 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 607, 639 |
| BbvI | GCAGC | 3 cut(s) | 190, 596, 599 |
| BccI | CCATC | 3 cut(s) | 326, 385, 562 |
| BceAI | ACGGC | 2 cut(s) | 253, 281 |
| BciT130I | CCWGG | 2 cut(s) | 183, 381 |
| BcoDI | GTCTC | 3 cut(s) | 317, 423, 530 |
| BfaI | CTAG | 4 cut(s) | 329, 404, 509, 666 |
| BfmI | CTRYAG | 1 cut(s) | 805 |
| BisI | GCNGC | 3 cut(s) | 179, 585, 588 |
| BlsI | GCNGC | 3 cut(s) | 180, 586, 589 |
| Bme1390I | CCNGG | 2 cut(s) | 183, 381 |
| BmiI | GGNNCC | 2 cut(s) | 139, 337 |
| BmrFI | CCNGG | 2 cut(s) | 183, 381 |
| BmsI | GCATC | 2 cut(s) | 30, 148 |
| BpmI | CTGGAG | 1 cut(s) | 612 |
| BpuEI | CTTGAG | 1 cut(s) | 439 |
| BsaJI | CCNNGG | 1 cut(s) | 43 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 807 |
| Bse1I | ACTGG | 1 cut(s) | 415 |
| BseBI | CCWGG | 2 cut(s) | 183, 381 |
| BseDI | CCNNGG | 1 cut(s) | 43 |
| BseGI | GGATG | 1 cut(s) | 400 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 807 |
| BseMII | CTCAG | 1 cut(s) | 720 |
| BseNI | ACTGG | 1 cut(s) | 415 |
| BseXI | GCAGC | 3 cut(s) | 190, 596, 599 |
| BshFI | GGCC | 1 cut(s) | 426 |
| BshNI | GGYRCC | 1 cut(s) | 137 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 807 |
| BsmAI | GTCTC | 3 cut(s) | 317, 423, 530 |
| BsmI | GAATGC | 2 cut(s) | 203, 283 |
| BsnI | GGCC | 1 cut(s) | 426 |
| BspACI | CCGC | 1 cut(s) | 819 |
| BspANI | GGCC | 1 cut(s) | 426 |
| BspCNI | CTCAG | 1 cut(s) | 721 |
| BspLI | GGNNCC | 2 cut(s) | 139, 337 |
| BspT107I | GGYRCC | 1 cut(s) | 137 |
| BsrI | ACTGG | 1 cut(s) | 415 |
| BssECI | CCNNGG | 1 cut(s) | 43 |
| BssT1I | CCWWGG | 1 cut(s) | 43 |
| Bst2UI | CCWGG | 2 cut(s) | 183, 381 |
| Bst4CI | ACNGT | 6 cut(s) | 32, 221, 319, 475, 682, 719 |
| Bst6I | CTCTTC | 1 cut(s) | 567 |
| BstDEI | CTNAG | 2 cut(s) | 611, 729 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 805 |
| BstF5I | GGATG | 1 cut(s) | 400 |
| BstMAI | GTCTC | 3 cut(s) | 317, 423, 530 |
| BstNI | CCWGG | 2 cut(s) | 183, 381 |
| BstSCI | CCNGG | 2 cut(s) | 181, 379 |
| BstSFI | CTRYAG | 1 cut(s) | 805 |
| BstV1I | GCAGC | 3 cut(s) | 190, 596, 599 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 422 |
| BsuRI | GGCC | 1 cut(s) | 426 |
| BtsCI | GGATG | 1 cut(s) | 400 |
| BtsI | GCAGTG | 1 cut(s) | 357 |
| BtsIMutI | CAGTG | 3 cut(s) | 315, 357, 687 |
| Csp6I | GTAC | 5 cut(s) | 138, 217, 571, 634, 695 |
| CviAII | CATG | 3 cut(s) | 274, 488, 710 |
| CviQI | GTAC | 5 cut(s) | 138, 217, 571, 634, 695 |
| DdeI | CTNAG | 2 cut(s) | 611, 729 |
| DraI | TTTAAA | 1 cut(s) | 171 |
| EaeI | YGGCCR | 1 cut(s) | 424 |
| Eam1104I | CTCTTC | 1 cut(s) | 567 |
| EarI | CTCTTC | 1 cut(s) | 567 |
| Eco130I | CCWWGG | 1 cut(s) | 43 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 805 |
| EcoRII | CCWGG | 2 cut(s) | 181, 379 |
| EcoT14I | CCWWGG | 1 cut(s) | 43 |
| ErhI | CCWWGG | 1 cut(s) | 43 |
| FaeI | CATG | 3 cut(s) | 277, 491, 713 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 808, 840 |
| FatI | CATG | 3 cut(s) | 273, 487, 709 |
| FauI | CCCGC | 1 cut(s) | 812 |
| FblI | GTMKAC | 1 cut(s) | 768 |
| Fnu4HI | GCNGC | 3 cut(s) | 179, 585, 588 |
| FokI | GGATG | 1 cut(s) | 407 |
| Fsp4HI | GCNGC | 3 cut(s) | 179, 585, 588 |
| FspBI | CTAG | 4 cut(s) | 329, 404, 509, 666 |
| GluI | GCNGC | 3 cut(s) | 179, 585, 588 |
| GsuI | CTGGAG | 1 cut(s) | 612 |
| HaeIII | GGCC | 1 cut(s) | 426 |
| Hin1II | CATG | 3 cut(s) | 277, 491, 713 |
| HincII | GTYRAC | 3 cut(s) | 265, 478, 769 |
| HindII | GTYRAC | 3 cut(s) | 265, 478, 769 |
| HindIII | AAGCTT | 2 cut(s) | 92, 616 |
| HinfI | GANTC | 3 cut(s) | 122, 830, 878 |
| HpaI | GTTAAC | 1 cut(s) | 478 |
| Hpy166II | GTNNAC | 3 cut(s) | 265, 478, 769 |
| Hpy188I | TCNGA | 2 cut(s) | 26, 157 |
| Hpy188III | TCNNGA | 1 cut(s) | 629 |
| Hpy8I | GTNNAC | 3 cut(s) | 265, 478, 769 |
| Hpy99I | CGWCG | 1 cut(s) | 225 |
| HpyAV | CCTTC | 1 cut(s) | 477 |
| HpyCH4III | ACNGT | 6 cut(s) | 32, 221, 319, 475, 682, 719 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 281, 302, 491, 503, 548, 713 |
| HpyF3I | CTNAG | 2 cut(s) | 611, 729 |
| Hsp92II | CATG | 3 cut(s) | 277, 491, 713 |
| KpnI | GGTACC | 1 cut(s) | 141 |
| KspAI | GTTAAC | 1 cut(s) | 478 |
| LmnI | GCTCC | 2 cut(s) | 206, 335 |
| Lsp1109I | GCAGC | 3 cut(s) | 190, 596, 599 |
| LweI | GCATC | 2 cut(s) | 30, 148 |
| MaeI | CTAG | 4 cut(s) | 329, 404, 509, 666 |
| MaeIII | GTNAC | 3 cut(s) | 496, 704, 724 |
| MboII | GAAGA | 3 cut(s) | 242, 245, 554 |
| MlsI | TGGCCA | 1 cut(s) | 426 |
| MluCI | AATT | 5 cut(s) | 77, 86, 596, 835, 865 |
| MluNI | TGGCCA | 1 cut(s) | 426 |
| MlyI | GAGTC | 1 cut(s) | 131 |
| MmeI | TCCRAC | 1 cut(s) | 304 |
| MnlI | CCTC | 1 cut(s) | 512 |
| Mox20I | TGGCCA | 1 cut(s) | 426 |
| MscI | TGGCCA | 1 cut(s) | 426 |
| MseI | TTAA | 3 cut(s) | 170, 345, 477 |
| MslI | CAYNNNNRTG | 2 cut(s) | 156, 492 |
| Msp20I | TGGCCA | 1 cut(s) | 426 |
| MspR9I | CCNGG | 2 cut(s) | 183, 381 |
| Mva1269I | GAATGC | 2 cut(s) | 203, 283 |
| MvaI | CCWGG | 2 cut(s) | 183, 381 |
| NlaIII | CATG | 3 cut(s) | 277, 491, 713 |
| NlaIV | GGNNCC | 2 cut(s) | 139, 337 |
| NmuCI | GTSAC | 1 cut(s) | 704 |
| PctI | GAATGC | 2 cut(s) | 203, 283 |
| PfeI | GAWTC | 2 cut(s) | 830, 878 |
| PfoI | TCCNGGA | 1 cut(s) | 379 |
| PkrI | GCNGC | 3 cut(s) | 180, 586, 589 |
| PleI | GAGTC | 1 cut(s) | 130 |
| PpsI | GAGTC | 1 cut(s) | 130 |
| PsiI | TTATAA | 1 cut(s) | 864 |
| Psp6I | CCWGG | 2 cut(s) | 181, 379 |
| PspGI | CCWGG | 2 cut(s) | 181, 379 |
| PspN4I | GGNNCC | 2 cut(s) | 139, 337 |
| RsaI | GTAC | 5 cut(s) | 139, 218, 572, 635, 696 |
| RsaNI | GTAC | 5 cut(s) | 138, 217, 571, 634, 695 |
| RseI | CAYNNNNRTG | 2 cut(s) | 156, 492 |
| SalI | GTCGAC | 1 cut(s) | 767 |
| SaqAI | TTAA | 3 cut(s) | 170, 345, 477 |
| SatI | GCNGC | 3 cut(s) | 179, 585, 588 |
| SchI | GAGTC | 1 cut(s) | 131 |
| ScrFI | CCNGG | 2 cut(s) | 183, 381 |
| SetI | ASST | 3 cut(s) | 49, 96, 620 |
| SfaNI | GCATC | 2 cut(s) | 30, 148 |
| SfcI | CTRYAG | 1 cut(s) | 805 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 156, 492 |
| SmlI | CTYRAG | 1 cut(s) | 454 |
| SmoI | CTYRAG | 1 cut(s) | 454 |
| Sse9I | AATT | 5 cut(s) | 77, 86, 596, 835, 865 |
| SsiI | CCGC | 1 cut(s) | 819 |
| SspI | AATATT | 1 cut(s) | 431 |
| SspMI | CTAG | 4 cut(s) | 329, 404, 509, 666 |
| StyD4I | CCNGG | 2 cut(s) | 181, 379 |
| StyI | CCWWGG | 1 cut(s) | 43 |
| TaaI | ACNGT | 6 cut(s) | 32, 221, 319, 475, 682, 719 |
| TaqI | TCGA | 3 cut(s) | 654, 686, 768 |
| TasI | AATT | 5 cut(s) | 77, 86, 596, 835, 865 |
| TatI | WGTACW | 2 cut(s) | 570, 694 |
| TfiI | GAWTC | 2 cut(s) | 830, 878 |
| Tru1I | TTAA | 3 cut(s) | 170, 345, 477 |
| Tru9I | TTAA | 3 cut(s) | 170, 345, 477 |
| TscAI | CASTG | 3 cut(s) | 322, 364, 687 |
| TseFI | GTSAC | 1 cut(s) | 704 |
| TseI | GCWGC | 3 cut(s) | 178, 584, 587 |
| Tsp45I | GTSAC | 1 cut(s) | 704 |
| TspDTI | ATGAA | 3 cut(s) | 290, 704, 843 |
| TspGWI | ACGGA | 1 cut(s) | 282 |
| TspRI | CASTG | 3 cut(s) | 322, 364, 687 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 805 |
| XapI | RAATTY | 3 cut(s) | 77, 596, 835 |
| XmiI | GTMKAC | 1 cut(s) | 768 |
| XspI | CTAG | 4 cut(s) | 329, 404, 509, 666 |