Lignin degradation and detoxification of lignin-derived products
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 143 |
| AgsI | TTSAA | 3 cut(s) | 242, 290, 346 |
| AluBI | AGCT | 4 cut(s) | 114, 220, 352, 396 |
| AluI | AGCT | 4 cut(s) | 114, 220, 352, 396 |
| Alw21I | GWGCWC | 1 cut(s) | 398 |
| Alw26I | GTCTC | 2 cut(s) | 16, 40 |
| BanII | GRGCYC | 1 cut(s) | 398 |
| Bbv12I | GWGCWC | 1 cut(s) | 398 |
| BccI | CCATC | 2 cut(s) | 23, 47 |
| BclI | TGATCA | 1 cut(s) | 106 |
| BcoDI | GTCTC | 2 cut(s) | 16, 40 |
| BfaI | CTAG | 1 cut(s) | 29 |
| BoxI | GACNNNNGTC | 1 cut(s) | 8 |
| BpmI | CTGGAG | 1 cut(s) | 412 |
| Bpu10I | CCTNAGC | 1 cut(s) | 397 |
| Bse1I | ACTGG | 1 cut(s) | 395 |
| BseMII | CTCAG | 1 cut(s) | 411 |
| BseNI | ACTGG | 1 cut(s) | 395 |
| BsiHKAI | GWGCWC | 1 cut(s) | 398 |
| BsmAI | GTCTC | 2 cut(s) | 16, 40 |
| Bsp1286I | GDGCHC | 1 cut(s) | 398 |
| Bsp143I | GATC | 1 cut(s) | 106 |
| BspCNI | CTCAG | 1 cut(s) | 410 |
| BsrI | ACTGG | 1 cut(s) | 395 |
| BssMI | GATC | 1 cut(s) | 106 |
| Bst4CI | ACNGT | 3 cut(s) | 261, 279, 301 |
| Bst6I | CTCTTC | 4 cut(s) | 156, 175, 208, 237 |
| BstC8I | GCNNGC | 1 cut(s) | 236 |
| BstDEI | CTNAG | 2 cut(s) | 221, 397 |
| BstKTI | GATC | 1 cut(s) | 109 |
| BstMAI | GTCTC | 2 cut(s) | 16, 40 |
| BstMBI | GATC | 1 cut(s) | 106 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 8 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 390 |
| BtsIMutI | CAGTG | 1 cut(s) | 328 |
| Cac8I | GCNNGC | 1 cut(s) | 236 |
| CviJI | RGCY | 6 cut(s) | 114, 220, 341, 352, 396, 411 |
| CviKI_1 | RGCY | 6 cut(s) | 114, 220, 341, 352, 396, 411 |
| DdeI | CTNAG | 2 cut(s) | 221, 397 |
| DpnI | GATC | 1 cut(s) | 108 |
| DpnII | GATC | 1 cut(s) | 106 |
| Eam1104I | CTCTTC | 4 cut(s) | 156, 175, 208, 237 |
| EarI | CTCTTC | 4 cut(s) | 156, 175, 208, 237 |
| Ecl136II | GAGCTC | 1 cut(s) | 396 |
| Eco24I | GRGCYC | 1 cut(s) | 398 |
| Eco53kI | GAGCTC | 1 cut(s) | 396 |
| EcoICRI | GAGCTC | 1 cut(s) | 396 |
| EcoT38I | GRGCYC | 1 cut(s) | 398 |
| FaiI | YATR | 2 cut(s) | 360, 362 |
| FauNDI | CATATG | 1 cut(s) | 360 |
| FbaI | TGATCA | 1 cut(s) | 106 |
| FriOI | GRGCYC | 1 cut(s) | 398 |
| FspBI | CTAG | 1 cut(s) | 29 |
| GsuI | CTGGAG | 1 cut(s) | 412 |
| HincII | GTYRAC | 1 cut(s) | 147 |
| HindII | GTYRAC | 1 cut(s) | 147 |
| HindIII | AAGCTT | 1 cut(s) | 112 |
| HinfI | GANTC | 4 cut(s) | 54, 286, 364, 403 |
| HpaI | GTTAAC | 1 cut(s) | 147 |
| Hpy166II | GTNNAC | 2 cut(s) | 147, 257 |
| Hpy188I | TCNGA | 3 cut(s) | 165, 285, 307 |
| Hpy188III | TCNNGA | 3 cut(s) | 29, 84, 136 |
| Hpy8I | GTNNAC | 2 cut(s) | 147, 257 |
| HpyAV | CCTTC | 1 cut(s) | 340 |
| HpyCH4III | ACNGT | 3 cut(s) | 261, 279, 301 |
| HpyCH4IV | ACGT | 1 cut(s) | 143 |
| HpyF3I | CTNAG | 2 cut(s) | 221, 397 |
| HpySE526I | ACGT | 1 cut(s) | 143 |
| Ksp22I | TGATCA | 1 cut(s) | 106 |
| KspAI | GTTAAC | 1 cut(s) | 147 |
| Kzo9I | GATC | 1 cut(s) | 106 |
| LmnI | GCTCC | 2 cut(s) | 349, 393 |
| LpnPI | CCDG | 4 cut(s) | 97, 376, 384, 392 |
| MaeI | CTAG | 1 cut(s) | 29 |
| MaeII | ACGT | 1 cut(s) | 143 |
| MalI | GATC | 1 cut(s) | 108 |
| MboI | GATC | 1 cut(s) | 106 |
| MboII | GAAGA | 9 cut(s) | 124, 143, 192, 205, 208, 222, 225, 254, 320 |
| MhlI | GDGCHC | 1 cut(s) | 398 |
| MluCI | AATT | 2 cut(s) | 157, 375 |
| MlyI | GAGTC | 1 cut(s) | 412 |
| MnlI | CCTC | 2 cut(s) | 68, 167 |
| MseI | TTAA | 2 cut(s) | 146, 354 |
| NdeI | CATATG | 1 cut(s) | 360 |
| NdeII | GATC | 1 cut(s) | 106 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 98 |
| PfeI | GAWTC | 3 cut(s) | 54, 286, 364 |
| PleI | GAGTC | 1 cut(s) | 411 |
| PpsI | GAGTC | 1 cut(s) | 411 |
| PshAI | GACNNNNGTC | 1 cut(s) | 8 |
| Psp124BI | GAGCTC | 1 cut(s) | 398 |
| Psp1406I | AACGTT | 1 cut(s) | 143 |
| SacI | GAGCTC | 1 cut(s) | 398 |
| SaqAI | TTAA | 2 cut(s) | 146, 354 |
| Sau3AI | GATC | 1 cut(s) | 106 |
| SchI | GAGTC | 1 cut(s) | 412 |
| SduI | GDGCHC | 1 cut(s) | 398 |
| SetI | ASST | 5 cut(s) | 116, 146, 222, 354, 398 |
| Sse9I | AATT | 2 cut(s) | 157, 375 |
| SspMI | CTAG | 1 cut(s) | 29 |
| SstI | GAGCTC | 1 cut(s) | 398 |
| TaaI | ACNGT | 3 cut(s) | 261, 279, 301 |
| TaiI | ACGT | 1 cut(s) | 146 |
| TasI | AATT | 2 cut(s) | 157, 375 |
| TfiI | GAWTC | 3 cut(s) | 54, 286, 364 |
| Tru1I | TTAA | 2 cut(s) | 146, 354 |
| Tru9I | TTAA | 2 cut(s) | 146, 354 |
| TscAI | CASTG | 1 cut(s) | 328 |
| TspRI | CASTG | 1 cut(s) | 328 |
| XbaI | TCTAGA | 1 cut(s) | 28 |
| XspI | CTAG | 1 cut(s) | 29 |