Lignin degradation and detoxification of lignin-derived products
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Mlo | PF03094 | 8 - 468 | 3.3e-181 | Mlo family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 47 |
| Acc36I | ACCTGC | 1 cut(s) | 47 |
| Acc65I | GGTACC | 1 cut(s) | 831 |
| AccB1I | GGYRCC | 2 cut(s) | 831, 1307 |
| AccI | GTMKAC | 2 cut(s) | 352, 1342 |
| AciI | CCGC | 4 cut(s) | 241, 721, 787, 911 |
| AclI | AACGTT | 1 cut(s) | 229 |
| AclWI | GGATC | 3 cut(s) | 564, 830, 1069 |
| AcsI | RAATTY | 2 cut(s) | 1096, 1143 |
| AcuI | CTGAAG | 2 cut(s) | 351, 1011 |
| AcyI | GRCGYC | 1 cut(s) | 355 |
| AfaI | GTAC | 4 cut(s) | 577, 833, 993, 1302 |
| AfeI | AGCGCT | 1 cut(s) | 533 |
| AgsI | TTSAA | 6 cut(s) | 613, 676, 797, 1094, 1211, 1276 |
| AjiI | CACGTC | 1 cut(s) | 1346 |
| AjnI | CCWGG | 1 cut(s) | 827 |
| AluBI | AGCT | 3 cut(s) | 394, 647, 1010 |
| AluI | AGCT | 3 cut(s) | 394, 647, 1010 |
| Alw21I | GWGCWC | 4 cut(s) | 306, 744, 1136, 1467 |
| Alw26I | GTCTC | 3 cut(s) | 110, 493, 1323 |
| AlwI | GGATC | 3 cut(s) | 564, 830, 1069 |
| Aor51HI | AGCGCT | 1 cut(s) | 533 |
| AoxI | GGCC | 2 cut(s) | 936, 1022 |
| ApeKI | GCWGC | 1 cut(s) | 644 |
| ApoI | RAATTY | 2 cut(s) | 1096, 1143 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 553, 585 |
| Asp718I | GGTACC | 1 cut(s) | 831 |
| AspLEI | GCGC | 1 cut(s) | 534 |
| AspS9I | GGNCC | 1 cut(s) | 936 |
| AsuHPI | GGTGA | 3 cut(s) | 587, 817, 1246 |
| BaeGI | GKGCMC | 1 cut(s) | 1312 |
| BanI | GGYRCC | 2 cut(s) | 831, 1307 |
| BbsI | GAAGAC | 1 cut(s) | 357 |
| Bbv12I | GWGCWC | 4 cut(s) | 306, 744, 1136, 1467 |
| BbvI | GCAGC | 1 cut(s) | 656 |
| BccI | CCATC | 5 cut(s) | 554, 606, 620, 873, 1255 |
| BceAI | ACGGC | 1 cut(s) | 945 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 731, 765 |
| BciT130I | CCWGG | 1 cut(s) | 829 |
| BclI | TGATCA | 1 cut(s) | 1389 |
| BcoDI | GTCTC | 3 cut(s) | 110, 493, 1323 |
| BfaI | CTAG | 2 cut(s) | 929, 1056 |
| BfoI | RGCGCY | 1 cut(s) | 535 |
| BfuAI | ACCTGC | 1 cut(s) | 47 |
| BisI | GCNGC | 3 cut(s) | 241, 645, 722 |
| BlpI | GCTNAGC | 1 cut(s) | 300 |
| BlsI | GCNGC | 3 cut(s) | 242, 646, 723 |
| BmcAI | AGTACT | 1 cut(s) | 577 |
| Bme1390I | CCNGG | 1 cut(s) | 829 |
| BmgBI | CACGTC | 1 cut(s) | 1346 |
| BmgT120I | GGNCC | 1 cut(s) | 936 |
| BmiI | GGNNCC | 4 cut(s) | 408, 833, 937, 1309 |
| BmrFI | CCNGG | 1 cut(s) | 829 |
| BmsI | GCATC | 5 cut(s) | 136, 177, 258, 774, 1164 |
| BpiI | GAAGAC | 1 cut(s) | 357 |
| BpmI | CTGGAG | 1 cut(s) | 1347 |
| Bpu10I | CCTNAGC | 1 cut(s) | 969 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 300 |
| BpuEI | CTTGAG | 1 cut(s) | 380 |
| BsaHI | GRCGYC | 1 cut(s) | 355 |
| BsaI | GGTCTC | 1 cut(s) | 110 |
| BsaJI | CCNNGG | 1 cut(s) | 495 |
| Bse3DI | GCAATG | 1 cut(s) | 711 |
| BseBI | CCWGG | 1 cut(s) | 829 |
| BseDI | CCNNGG | 1 cut(s) | 495 |
| BseGI | GGATG | 6 cut(s) | 249, 546, 666, 884, 979, 1493 |
| BseMI | GCAATG | 1 cut(s) | 711 |
| BseMII | CTCAG | 3 cut(s) | 31, 291, 983 |
| BseRI | GAGGAG | 1 cut(s) | 1357 |
| BseSI | GKGCMC | 1 cut(s) | 1312 |
| BseXI | GCAGC | 1 cut(s) | 656 |
| BseYI | CCCAGC | 1 cut(s) | 534 |
| BsgI | GTGCAG | 1 cut(s) | 642 |
| BshFI | GGCC | 2 cut(s) | 938, 1024 |
| BshNI | GGYRCC | 2 cut(s) | 831, 1307 |
| BsiHKAI | GWGCWC | 4 cut(s) | 306, 744, 1136, 1467 |
| BsmAI | GTCTC | 3 cut(s) | 110, 493, 1323 |
| BsmBI | CGTCTC | 1 cut(s) | 1323 |
| BsmI | GAATGC | 1 cut(s) | 668 |
| BsnI | GGCC | 2 cut(s) | 938, 1024 |
| Bso31I | GGTCTC | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 5 cut(s) | 306, 744, 1136, 1312, 1467 |
| Bsp143I | GATC | 5 cut(s) | 477, 556, 822, 1074, 1389 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 300 |
| Bsp19I | CCATGG | 1 cut(s) | 495 |
| BspACI | CCGC | 4 cut(s) | 241, 721, 787, 911 |
| BspANI | GGCC | 2 cut(s) | 938, 1024 |
| BspCNI | CTCAG | 3 cut(s) | 30, 292, 982 |
| BspHI | TCATGA | 1 cut(s) | 601 |
| BspLI | GGNNCC | 4 cut(s) | 408, 833, 937, 1309 |
| BspMI | ACCTGC | 1 cut(s) | 47 |
| BspPI | GGATC | 3 cut(s) | 564, 830, 1069 |
| BspQI | GCTCTTC | 1 cut(s) | 634 |
| BspT107I | GGYRCC | 2 cut(s) | 831, 1307 |
| BspTNI | GGTCTC | 1 cut(s) | 110 |
| BsrDI | GCAATG | 1 cut(s) | 711 |
| BssECI | CCNNGG | 1 cut(s) | 495 |
| BssMI | GATC | 5 cut(s) | 477, 556, 822, 1074, 1389 |
| BssNI | GRCGYC | 1 cut(s) | 355 |
| BssT1I | CCWWGG | 1 cut(s) | 495 |
| Bst2UI | CCWGG | 1 cut(s) | 829 |
| Bst4CI | ACNGT | 4 cut(s) | 220, 389, 1300, 1414 |
| Bst6I | CTCTTC | 1 cut(s) | 634 |
| BstACI | GRCGYC | 1 cut(s) | 355 |
| BstC8I | GCNNGC | 1 cut(s) | 1358 |
| BstDEI | CTNAG | 5 cut(s) | 17, 300, 699, 969, 1500 |
| BstDSI | CCRYGG | 1 cut(s) | 495 |
| BstF5I | GGATG | 6 cut(s) | 249, 546, 666, 884, 979, 1493 |
| BstH2I | RGCGCY | 1 cut(s) | 535 |
| BstHHI | GCGC | 1 cut(s) | 534 |
| BstKTI | GATC | 5 cut(s) | 480, 559, 825, 1077, 1392 |
| BstMAI | GTCTC | 3 cut(s) | 110, 493, 1323 |
| BstMBI | GATC | 5 cut(s) | 477, 556, 822, 1074, 1389 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 246, 263, 1227, 1331 |
| BstNI | CCWGG | 1 cut(s) | 829 |
| BstNSI | RCATGY | 2 cut(s) | 998, 1273 |
| BstSCI | CCNGG | 1 cut(s) | 827 |
| BstSLI | GKGCMC | 1 cut(s) | 1312 |
| BstV1I | GCAGC | 1 cut(s) | 656 |
| BstV2I | GAAGAC | 1 cut(s) | 357 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 116 |
| BsuRI | GGCC | 2 cut(s) | 938, 1024 |
| BtgI | CCRYGG | 1 cut(s) | 495 |
| BtgZI | GCGATG | 1 cut(s) | 1165 |
| BtrI | CACGTC | 1 cut(s) | 1346 |
| BtsCI | GGATG | 6 cut(s) | 249, 546, 666, 884, 979, 1493 |
| BtsI | GCAGTG | 2 cut(s) | 716, 742 |
| BtsIMutI | CAGTG | 3 cut(s) | 385, 716, 742 |
| BveI | ACCTGC | 1 cut(s) | 47 |
| Cac8I | GCNNGC | 1 cut(s) | 1358 |
| CciI | TCATGA | 1 cut(s) | 601 |
| CfoI | GCGC | 1 cut(s) | 534 |
| Cfr13I | GGNCC | 1 cut(s) | 936 |
| CseI | GACGC | 2 cut(s) | 363, 1340 |
| CsiI | ACCWGGT | 1 cut(s) | 827 |
| Csp6I | GTAC | 4 cut(s) | 576, 832, 992, 1301 |
| CviQI | GTAC | 4 cut(s) | 576, 832, 992, 1301 |
| DdeI | CTNAG | 5 cut(s) | 17, 300, 699, 969, 1500 |
| DpnI | GATC | 5 cut(s) | 479, 558, 824, 1076, 1391 |
| DpnII | GATC | 5 cut(s) | 477, 556, 822, 1074, 1389 |
| Eam1104I | CTCTTC | 1 cut(s) | 634 |
| EarI | CTCTTC | 1 cut(s) | 634 |
| Eco130I | CCWWGG | 1 cut(s) | 495 |
| Eco147I | AGGCCT | 1 cut(s) | 1024 |
| Eco31I | GGTCTC | 1 cut(s) | 110 |
| Eco47III | AGCGCT | 1 cut(s) | 533 |
| Eco57I | CTGAAG | 2 cut(s) | 351, 1011 |
| EcoRI | GAATTC | 1 cut(s) | 1143 |
| EcoRII | CCWGG | 1 cut(s) | 827 |
| EcoT14I | CCWWGG | 1 cut(s) | 495 |
| EcoT22I | ATGCAT | 2 cut(s) | 251, 1157 |
| ErhI | CCWWGG | 1 cut(s) | 495 |
| Esp3I | CGTCTC | 1 cut(s) | 1323 |
| FauNDI | CATATG | 2 cut(s) | 245, 273 |
| FbaI | TGATCA | 1 cut(s) | 1389 |
| FblI | GTMKAC | 2 cut(s) | 352, 1342 |
| Fnu4HI | GCNGC | 3 cut(s) | 241, 645, 722 |
| FokI | GGATG | 6 cut(s) | 236, 533, 673, 891, 986, 1480 |
| Fsp4HI | GCNGC | 3 cut(s) | 241, 645, 722 |
| FspBI | CTAG | 2 cut(s) | 929, 1056 |
| GlaI | GCGC | 1 cut(s) | 533 |
| GluI | GCNGC | 3 cut(s) | 241, 645, 722 |
| GsaI | CCCAGC | 1 cut(s) | 538 |
| GsuI | CTGGAG | 1 cut(s) | 1347 |
| HaeII | RGCGCY | 1 cut(s) | 535 |
| HaeIII | GGCC | 2 cut(s) | 938, 1024 |
| HgaI | GACGC | 2 cut(s) | 363, 1340 |
| HhaI | GCGC | 1 cut(s) | 534 |
| Hin1I | GRCGYC | 1 cut(s) | 355 |
| Hin6I | GCGC | 1 cut(s) | 532 |
| HinP1I | GCGC | 1 cut(s) | 532 |
| HincII | GTYRAC | 2 cut(s) | 227, 353 |
| HindII | GTYRAC | 2 cut(s) | 227, 353 |
| HinfI | GANTC | 3 cut(s) | 542, 916, 1004 |
| HphI | GGTGA | 3 cut(s) | 587, 817, 1246 |
| Hpy166II | GTNNAC | 5 cut(s) | 36, 227, 353, 874, 1343 |
| Hpy188I | TCNGA | 3 cut(s) | 370, 706, 1030 |
| Hpy188III | TCNNGA | 8 cut(s) | 550, 602, 610, 758, 971, 1105, 1123, 1276 |
| Hpy8I | GTNNAC | 5 cut(s) | 36, 227, 353, 874, 1343 |
| Hpy99I | CGWCG | 1 cut(s) | 357 |
| HpyAV | CCTTC | 8 cut(s) | 218, 368, 397, 419, 547, 1035, 1273, 1497 |
| HpyCH4III | ACNGT | 4 cut(s) | 220, 389, 1300, 1414 |
| HpyCH4IV | ACGT | 4 cut(s) | 229, 585, 619, 1345 |
| HpyCH4V | TGCA | 9 cut(s) | 133, 149, 249, 623, 716, 1155, 1221, 1381, 1424 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 246, 263, 1227, 1331 |
| HpyF3I | CTNAG | 5 cut(s) | 17, 300, 699, 969, 1500 |
| HpySE526I | ACGT | 4 cut(s) | 229, 585, 619, 1345 |
| Hsp92I | GRCGYC | 1 cut(s) | 355 |
| HspAI | GCGC | 1 cut(s) | 532 |
| KpnI | GGTACC | 1 cut(s) | 835 |
| Ksp22I | TGATCA | 1 cut(s) | 1389 |
| Kzo9I | GATC | 5 cut(s) | 477, 556, 822, 1074, 1389 |
| LguI | GCTCTTC | 1 cut(s) | 634 |
| LmnI | GCTCC | 3 cut(s) | 739, 1131, 1470 |
| Lsp1109I | GCAGC | 1 cut(s) | 656 |
| LweI | GCATC | 5 cut(s) | 136, 177, 258, 774, 1164 |
| MabI | ACCWGGT | 1 cut(s) | 827 |
| MaeI | CTAG | 2 cut(s) | 929, 1056 |
| MaeII | ACGT | 4 cut(s) | 229, 585, 619, 1345 |
| MaeIII | GTNAC | 4 cut(s) | 694, 1223, 1252, 1346 |
| MalI | GATC | 5 cut(s) | 479, 558, 824, 1076, 1391 |
| MboI | GATC | 5 cut(s) | 477, 556, 822, 1074, 1389 |
| MhlI | GDGCHC | 5 cut(s) | 306, 744, 1136, 1312, 1467 |
| MluCI | AATT | 9 cut(s) | 182, 680, 798, 941, 1059, 1069, 1096, 1143, 1335 |
| MmeI | TCCRAC | 2 cut(s) | 65, 638 |
| MnlI | CCTC | 9 cut(s) | 282, 500, 532, 759, 1014, 1322, 1375, 1378, 1414 |
| Mph1103I | ATGCAT | 2 cut(s) | 251, 1157 |
| MseI | TTAA | 3 cut(s) | 330, 978, 1047 |
| MslI | CAYNNNNRTG | 3 cut(s) | 600, 999, 1259 |
| MspA1I | CMGCKG | 1 cut(s) | 913 |
| MspR9I | CCNGG | 1 cut(s) | 829 |
| Mva1269I | GAATGC | 1 cut(s) | 668 |
| MvaI | CCWGG | 1 cut(s) | 829 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 246, 263, 1227, 1331 |
| NcoI | CCATGG | 1 cut(s) | 495 |
| NdeI | CATATG | 2 cut(s) | 245, 273 |
| NdeII | GATC | 5 cut(s) | 477, 556, 822, 1074, 1389 |
| NlaIV | GGNNCC | 4 cut(s) | 408, 833, 937, 1309 |
| NmeAIII | GCCGAG | 1 cut(s) | 121 |
| NmuCI | GTSAC | 3 cut(s) | 694, 1252, 1346 |
| NsiI | ATGCAT | 2 cut(s) | 251, 1157 |
| NspI | RCATGY | 2 cut(s) | 998, 1273 |
| PagI | TCATGA | 1 cut(s) | 601 |
| PaqCI | CACCTGC | 1 cut(s) | 47 |
| PceI | AGGCCT | 1 cut(s) | 1024 |
| PciSI | GCTCTTC | 1 cut(s) | 634 |
| PctI | GAATGC | 1 cut(s) | 668 |
| PfeI | GAWTC | 3 cut(s) | 542, 916, 1004 |
| PkrI | GCNGC | 3 cut(s) | 242, 646, 723 |
| Psp1406I | AACGTT | 1 cut(s) | 229 |
| Psp6I | CCWGG | 1 cut(s) | 827 |
| PspFI | CCCAGC | 1 cut(s) | 534 |
| PspGI | CCWGG | 1 cut(s) | 827 |
| PspN4I | GGNNCC | 4 cut(s) | 408, 833, 937, 1309 |
| PspPI | GGNCC | 1 cut(s) | 936 |
| RsaI | GTAC | 4 cut(s) | 577, 833, 993, 1302 |
| RsaNI | GTAC | 4 cut(s) | 576, 832, 992, 1301 |
| RseI | CAYNNNNRTG | 3 cut(s) | 600, 999, 1259 |
| SalI | GTCGAC | 1 cut(s) | 351 |
| SapI | GCTCTTC | 1 cut(s) | 634 |
| SaqAI | TTAA | 3 cut(s) | 330, 978, 1047 |
| SatI | GCNGC | 3 cut(s) | 241, 645, 722 |
| Sau3AI | GATC | 5 cut(s) | 477, 556, 822, 1074, 1389 |
| Sau96I | GGNCC | 1 cut(s) | 936 |
| ScaI | AGTACT | 1 cut(s) | 577 |
| ScrFI | CCNGG | 1 cut(s) | 829 |
| SduI | GDGCHC | 5 cut(s) | 306, 744, 1136, 1312, 1467 |
| SexAI | ACCWGGT | 1 cut(s) | 827 |
| SfaNI | GCATC | 5 cut(s) | 136, 177, 258, 774, 1164 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 600, 999, 1259 |
| SmlI | CTYRAG | 1 cut(s) | 395 |
| SmoI | CTYRAG | 1 cut(s) | 395 |
| Sse9I | AATT | 9 cut(s) | 182, 680, 798, 941, 1059, 1069, 1096, 1143, 1335 |
| SseBI | AGGCCT | 1 cut(s) | 1024 |
| SsiI | CCGC | 4 cut(s) | 241, 721, 787, 911 |
| SspMI | CTAG | 2 cut(s) | 929, 1056 |
| StuI | AGGCCT | 1 cut(s) | 1024 |
| StyD4I | CCNGG | 1 cut(s) | 827 |
| StyI | CCWWGG | 1 cut(s) | 495 |
| TaaI | ACNGT | 4 cut(s) | 220, 389, 1300, 1414 |
| TaiI | ACGT | 4 cut(s) | 232, 588, 622, 1348 |
| TaqI | TCGA | 7 cut(s) | 352, 559, 751, 1104, 1290, 1314, 1416 |
| TasI | AATT | 9 cut(s) | 182, 680, 798, 941, 1059, 1069, 1096, 1143, 1335 |
| TatI | WGTACW | 2 cut(s) | 575, 991 |
| TauI | GCSGC | 2 cut(s) | 243, 724 |
| TfiI | GAWTC | 3 cut(s) | 542, 916, 1004 |
| Tru1I | TTAA | 3 cut(s) | 330, 978, 1047 |
| Tru9I | TTAA | 3 cut(s) | 330, 978, 1047 |
| TscAI | CASTG | 3 cut(s) | 392, 723, 749 |
| TseFI | GTSAC | 3 cut(s) | 694, 1252, 1346 |
| TseI | GCWGC | 1 cut(s) | 644 |
| Tsp45I | GTSAC | 3 cut(s) | 694, 1252, 1346 |
| TspGWI | ACGGA | 1 cut(s) | 891 |
| TspRI | CASTG | 3 cut(s) | 392, 723, 749 |
| XapI | RAATTY | 2 cut(s) | 1096, 1143 |
| XceI | RCATGY | 2 cut(s) | 998, 1273 |
| XmiI | GTMKAC | 2 cut(s) | 352, 1342 |
| XspI | CTAG | 2 cut(s) | 929, 1056 |
| ZrmI | AGTACT | 1 cut(s) | 577 |
| Zsp2I | ATGCAT | 2 cut(s) | 251, 1157 |