RchiOBHm_Chr6g0252431

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000320
Physical Location & Seq
Forward (+)
7594955 .. 7597685
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22634

Sequence Viewer

Length: 837 bp
ATGATTTTGTTCATCTTGGTAGTGAACGATTGTTTTCCAGGTCCAGAGATACGAGTTCGCAAAGGAGATACAGTTTACGCATGGGAAAAACAACCAAGAAATCCGTGGTCAGATGGTCCAGAGTACATCACGCAGTGTCCAATTCTTCCAGGAACAAATTTCACTTATGAAATCTCTTTATCCACTGAAGAAGGAACTTTATGGTGGCATGCTCATAGTGATTGGACAAGAGCCACTGTTCATGGTGCGATTGTCATCTTACCAAGTGTAGGAACCACATTTCCATTTCCTCAACCGGATGAAGATGAGACCATTATAATTGCATCCTGGTACGAGGGAGATATCAAAGAACTAGTTGATGAGGCTATGGATGATGGTAGCGACCTGCCCCATTCAGATGCTTATACAAAAATGGCGAACCAGGAGACTTTTGTCCATGCTCCAGTGGTAAAAACAACATATCATCGAATGGTTGACTACGGCAAGACCTATCTTCTTCGTATAGTCAACGCAAACATCAACGCAGAACACTTCTTTGCAGTTGCTGAACATAATCTCACCGTTGTTGGCCTAGACGGAGCCTATATAAAACCGATAGACACAACCTACATAGTCATCAGTGCTGGACAGGCGATGGATGTCCTCCTCAAAGCAAACCAATCTCCTGGCCAATACTATATAGCTGCTAGACAATACTCAAGTGAGGATCCAGAAGTGACTGGCTTTGACCATGCGAATGTTACCGCAATCCTTGAATACAGAGGCAACTACACATATCAGGCATCTCCTTCCTTTCCAACTACTCTTCCATGTACTTGGACTATGCAGCAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

278

Amino Acids

31.29

Weight (kDa)

4.64

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 30 - 88 5.6e-18 Multicopper oxidase
Cu-oxidase PF00394 102 - 256 1e-32 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 393
AciI CCGC 1 cut(s) 744
AclWI GGATC 2 cut(s) 701, 714
AcoI YGGCCR 1 cut(s) 667
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 207
AdeI CACNNNGTG 1 cut(s) 135
AfaI GTAC 3 cut(s) 125, 332, 814
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 1 cut(s) 755
AhlI ACTAGT 1 cut(s) 352
AjnI CCWGG 5 cut(s) 37, 148, 326, 420, 664
AloI GAACNNNNNNTCC 2 cut(s) 265, 297
AluBI AGCT 1 cut(s) 683
AluI AGCT 1 cut(s) 683
Alw26I GTCTC 2 cut(s) 302, 419
AlwI GGATC 2 cut(s) 701, 714
AlwNI CAGNNNCTG 1 cut(s) 545
AoxI GGCC 2 cut(s) 568, 667
ApeKI GCWGC 3 cut(s) 683, 826, 829
ApoI RAATTY 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 41, 116
AsuHPI GGTGA 1 cut(s) 550
AvaII GGWCC 2 cut(s) 41, 116
BalI TGGCCA 1 cut(s) 669
BamHI GGATCC 1 cut(s) 706
BbvI GCAGC 1 cut(s) 670
BccI CCATC 3 cut(s) 107, 368, 628
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 5 cut(s) 39, 150, 328, 422, 666
BcoDI GTCTC 2 cut(s) 302, 419
BcuI ACTAGT 1 cut(s) 352
BfaI CTAG 3 cut(s) 353, 572, 687
BfuAI ACCTGC 1 cut(s) 393
BisI GCNGC 3 cut(s) 684, 827, 830
BlsI GCNGC 3 cut(s) 685, 828, 831
Bme1390I CCNGG 5 cut(s) 39, 150, 328, 422, 666
Bme18I GGWCC 2 cut(s) 41, 116
BmgT120I GGNCC 2 cut(s) 41, 116
BmiI GGNNCC 3 cut(s) 274, 580, 708
BmrFI CCNGG 5 cut(s) 39, 150, 328, 422, 666
BmsI GCATC 3 cut(s) 332, 388, 791
BoxI GACNNNNGTC 1 cut(s) 431
BpmI CTGGAG 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 682
BsaBI GATNNNNATC 1 cut(s) 254
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 1 cut(s) 104
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse1I ACTGG 2 cut(s) 443, 724
Bse8I GATNNNNATC 1 cut(s) 254
BseBI CCWGG 5 cut(s) 39, 150, 328, 422, 666
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 4 cut(s) 304, 323, 376, 643
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 1 cut(s) 269
BseNI ACTGG 2 cut(s) 443, 724
BseRI GAGGAG 1 cut(s) 635
BseXI GCAGC 1 cut(s) 670
BshFI GGCC 2 cut(s) 570, 669
BsiSI CCGG 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 269
BsmAI GTCTC 2 cut(s) 302, 419
BsnI GGCC 2 cut(s) 570, 669
Bso31I GGTCTC 1 cut(s) 302
Bsp143I GATC 1 cut(s) 706
BspACI CCGC 1 cut(s) 744
BspANI GGCC 2 cut(s) 570, 669
BspLI GGNNCC 3 cut(s) 274, 580, 708
BspMI ACCTGC 1 cut(s) 393
BspPI GGATC 2 cut(s) 701, 714
BspTNI GGTCTC 1 cut(s) 302
BsrI ACTGG 2 cut(s) 443, 724
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 1 cut(s) 706
Bst2UI CCWGG 5 cut(s) 39, 150, 328, 422, 666
Bst4CI ACNGT 3 cut(s) 73, 238, 562
Bst6I CTCTTC 1 cut(s) 810
BstC8I GCNNGC 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 4 cut(s) 304, 323, 376, 643
BstKTI GATC 1 cut(s) 709
BstMAI GTCTC 2 cut(s) 302, 419
BstMBI GATC 1 cut(s) 706
BstMWI GCNNNNNNNGC 1 cut(s) 629
BstNI CCWGG 5 cut(s) 39, 150, 328, 422, 666
BstNSI RCATGY 1 cut(s) 212
BstPAI GACNNNNGTC 1 cut(s) 431
BstSCI CCNGG 5 cut(s) 37, 148, 326, 420, 664
BstV1I GCAGC 1 cut(s) 670
BstX2I RGATCY 1 cut(s) 706
BstXI CCANNNNNNTGG 2 cut(s) 665, 816
BstYI RGATCY 1 cut(s) 706
BsuRI GGCC 2 cut(s) 570, 669
BtgI CCRYGG 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 647
BtsCI GGATG 4 cut(s) 304, 323, 376, 643
BtsI GCAGTG 1 cut(s) 140
BtsIMutI CAGTG 5 cut(s) 140, 183, 234, 450, 625
BveI ACCTGC 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 210
CaiI CAGNNNCTG 1 cut(s) 545
Cfr13I GGNCC 2 cut(s) 41, 116
Csp6I GTAC 3 cut(s) 124, 331, 813
CviAII CATG 6 cut(s) 81, 209, 242, 437, 731, 810
CviJI RGCY 7 cut(s) 233, 365, 570, 581, 669, 683, 723
CviKI_1 RGCY 7 cut(s) 233, 365, 570, 581, 669, 683, 723
CviQI GTAC 3 cut(s) 124, 331, 813
DpnI GATC 1 cut(s) 708
DpnII GATC 1 cut(s) 706
DraIII CACNNNGTG 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 667
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Eco31I GGTCTC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 2 cut(s) 41, 116
Eco57I CTGAAG 1 cut(s) 207
EcoRII CCWGG 5 cut(s) 37, 148, 326, 420, 664
EcoRV GATATC 1 cut(s) 343
FaeI CATG 6 cut(s) 84, 212, 245, 440, 734, 813
FatI CATG 6 cut(s) 80, 208, 241, 436, 730, 809
Fnu4HI GCNGC 3 cut(s) 684, 827, 830
FokI GGATG 4 cut(s) 310, 311, 383, 650
Fsp4HI GCNGC 3 cut(s) 684, 827, 830
FspBI CTAG 3 cut(s) 353, 572, 687
GluI GCNGC 3 cut(s) 684, 827, 830
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 2 cut(s) 570, 669
HapII CCGG 1 cut(s) 296
Hin1II CATG 6 cut(s) 84, 212, 245, 440, 734, 813
HincII GTYRAC 2 cut(s) 475, 508
HindII GTYRAC 2 cut(s) 475, 508
HpaII CCGG 1 cut(s) 296
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 4 cut(s) 25, 76, 475, 508
Hpy188I TCNGA 2 cut(s) 112, 397
Hpy188III TCNNGA 3 cut(s) 44, 119, 710
Hpy8I GTNNAC 4 cut(s) 25, 76, 475, 508
HpyAV CCTTC 2 cut(s) 185, 798
HpyCH4III ACNGT 3 cut(s) 73, 238, 562
HpyCH4V TGCA 3 cut(s) 323, 539, 826
HpyF10VI GCNNNNNNNGC 1 cut(s) 629
Hsp92II CATG 6 cut(s) 84, 212, 245, 440, 734, 813
Kzo9I GATC 1 cut(s) 706
LmnI GCTCC 2 cut(s) 445, 578
Lsp1109I GCAGC 1 cut(s) 670
LweI GCATC 3 cut(s) 332, 388, 791
MaeI CTAG 3 cut(s) 353, 572, 687
MaeIII GTNAC 2 cut(s) 715, 739
MalI GATC 1 cut(s) 708
MboI GATC 1 cut(s) 706
MboII GAAGA 6 cut(s) 137, 200, 314, 485, 488, 797
MflI RGATCY 1 cut(s) 706
MlsI TGGCCA 1 cut(s) 669
MluCI AATT 3 cut(s) 141, 157, 318
MluNI TGGCCA 1 cut(s) 669
MmeI TCCRAC 1 cut(s) 821
MnlI CCTC 7 cut(s) 300, 328, 355, 653, 656, 697, 755
Mox20I TGGCCA 1 cut(s) 669
MscI TGGCCA 1 cut(s) 669
MslI CAYNNNNRTG 2 cut(s) 396, 735
Msp20I TGGCCA 1 cut(s) 669
MspI CCGG 1 cut(s) 296
MspR9I CCNGG 5 cut(s) 39, 150, 328, 422, 666
MvaI CCWGG 5 cut(s) 39, 150, 328, 422, 666
MwoI GCNNNNNNNGC 1 cut(s) 629
NdeII GATC 1 cut(s) 706
NlaIII CATG 6 cut(s) 84, 212, 245, 440, 734, 813
NlaIV GGNNCC 3 cut(s) 274, 580, 708
NmuCI GTSAC 1 cut(s) 715
NspI RCATGY 1 cut(s) 212
PaeI GCATGC 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 148
PkrI GCNGC 3 cut(s) 685, 828, 831
PshAI GACNNNNGTC 1 cut(s) 431
PsiI TTATAA 1 cut(s) 317
Psp6I CCWGG 5 cut(s) 37, 148, 326, 420, 664
PspGI CCWGG 5 cut(s) 37, 148, 326, 420, 664
PspN4I GGNNCC 3 cut(s) 274, 580, 708
PspPI GGNCC 2 cut(s) 41, 116
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 706
RsaI GTAC 3 cut(s) 125, 332, 814
RsaNI GTAC 3 cut(s) 124, 331, 813
RseI CAYNNNNRTG 2 cut(s) 396, 735
SatI GCNGC 3 cut(s) 684, 827, 830
Sau3AI GATC 1 cut(s) 706
Sau96I GGNCC 2 cut(s) 41, 116
ScrFI CCNGG 5 cut(s) 39, 150, 328, 422, 666
SetI ASST 5 cut(s) 43, 387, 491, 608, 685
SfaNI GCATC 3 cut(s) 332, 388, 791
SinI GGWCC 2 cut(s) 41, 116
SmiMI CAYNNNNRTG 2 cut(s) 396, 735
SmlI CTYRAG 1 cut(s) 697
SmoI CTYRAG 1 cut(s) 697
SpeI ACTAGT 1 cut(s) 352
SphI GCATGC 1 cut(s) 212
Sse9I AATT 3 cut(s) 141, 157, 318
SsiI CCGC 1 cut(s) 744
SspMI CTAG 3 cut(s) 353, 572, 687
StyD4I CCNGG 5 cut(s) 37, 148, 326, 420, 664
TaaI ACNGT 3 cut(s) 73, 238, 562
TaqI TCGA 1 cut(s) 466
TasI AATT 3 cut(s) 141, 157, 318
TatI WGTACW 2 cut(s) 123, 812
TscAI CASTG 5 cut(s) 140, 190, 241, 450, 625
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 3 cut(s) 683, 826, 829
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 3 cut(s) 183, 230, 315
TspGWI ACGGA 2 cut(s) 93, 591
TspRI CASTG 5 cut(s) 140, 190, 241, 450, 625
VpaK11BI GGWCC 2 cut(s) 41, 116
XapI RAATTY 1 cut(s) 157
XceI RCATGY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
XspI CTAG 3 cut(s) 353, 572, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.