Rh4BG415100

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000320
Physical Location & Seq
Forward (+)
56298172 .. 56301353
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG415100.1

Sequence Viewer

Length: 1515 bp
ATGCAGCCAAGAAATCCATGGGCAGATGGCCCTGAGTACATCACACAGTGTCCTATTCAACCTGGGACAAATTTCACCTACGAAATTTTATTATCCAAGGAAGAAGGAACTGTATGGTGGCATGCTCATAGTGATTGGACGCGTGCCAGTGTTCATGGTGCCATTGTCATTTTGCCTGCCGTTGGAACCACATTTCCATATCCTAAACCTGATGAAGATGAGGTTATCATAATAGCGTCCTGGTACAATGGAGATCTGCAAGCGCGGGTTGATGAGGCTATGGATAATAACGAGAACTTGCCCCATTCTGATGCTTACACCATAAATGGCCAGCCTGGGGATCTGTGTCCTTGCTCAAATGAAACAACTTACCGTCGAAATGTGGACTACGGCAAGACCTATCTTCTTCGTATAGTCAATGCAAACATTGATGCAGATGTTTTCTTTGCAATTGCACAACACAACTTTACTGTGGTTGGACTCGATGGAGCCTATATTAAACCCATTGACACAACCTACATAGTGTTGAGCCCTGGACAAACAATGGATGTTTTGTTGGAAGCAAATCAGGTTCTCGGGCATTATTACATGGCCGGGAGACATTTCTCGAGTGAGAATGTGGCGGTTGCTGACTTTGACCATGCCAATGTTACTGCAATTTTAGAATACAATGGCAACTATACCTATCCGACATCTCTCGTCTTTCCCAGTACTCTTCCAATGTACTACGACTTTGCAGCATCACTGAACTTCACAAACCAAATTAGAAGCTTAGCCATCCCAGAATATGCTATAAATGTTCCATTAGACAATGAAATTACTACTAGGATGTTTATAACAACTTCCATGAATTCTCTCTATTGCGAAGATTCAAGCTCAGGTTGTGAAACGAAACAAATCACTGCAAGCGTAAATAACATCAGTTGGGTTAACCCAAGTACTGATATCTTGCAATCCTATTACAGAAACATAAGCGGAATCTACTCAGCAGATTTCCCAGATTATCCGCCTTCTTTCTATAACTTCACCGAGGAATCGTACTCGATTGATACGGCACTAACAGTACAAGGGAGAAAGGTTAAGGTGTTGAATTACAATGAATCGGTTGAGATTGTATTTCAGGGGACTAATGTTTTAGACGGCTCTGTGAATCATCCGATGCATTTGCATGGATATAGCTTTTATGTGGTTGGGTATGGCTTTGGAAATTATGACAATGTTACTGACCCCAAAGGGTTTAATTTGGTTGATCCTCCTGAGGTGACTACATTTGCAATTCCCAAGAATGGATGGTTAGCAATCAGATTCACAGCCAATAATCCAGGGGTATGGTTTTGGCATTGTCATATGGACAGACACTTGACTTGGGGTATGGAAGCTGCTTTTATAGTAAAGAATGGGGACACTATTGAGACTAGCATTCGCCAACCTCCAGGTTACATGCCACCATGTAAGATCCCATTAGATTCTGGTTTAAAAAGCTCCCAGGAAATTACTAAGAAGAAAGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

504

Amino Acids

56.6

Weight (kDa)

4.76

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 2 - 59 1.5e-17 Multicopper oxidase
Cu-oxidase PF00394 73 - 226 6.6e-35 Multicopper oxidase
Cu-oxidase_2 PF07731 334 - 467 1.3e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 836
AccB1I GGYRCC 1 cut(s) 158
AccII CGCG 2 cut(s) 142, 265
AciI CCGC 4 cut(s) 265, 623, 975, 1007
AclWI GGATC 3 cut(s) 348, 1244, 1450
AcoI YGGCCR 2 cut(s) 328, 591
AcsI RAATTY 3 cut(s) 70, 84, 850
AdeI CACNNNGTG 1 cut(s) 48
AfaI GTAC 7 cut(s) 38, 245, 712, 725, 940, 1040, 1065
AfiI CCNNNNNNNGG 3 cut(s) 182, 337, 1286
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 3 cut(s) 59, 873, 1090
AjnI CCWGG 7 cut(s) 61, 239, 334, 532, 1321, 1432, 1485
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 5 cut(s) 771, 876, 1179, 1379, 1482
AluI AGCT 5 cut(s) 771, 876, 1179, 1379, 1482
Alw26I GTCTC 2 cut(s) 592, 1406
AlwI GGATC 3 cut(s) 348, 1244, 1450
Ama87I CYCGRG 2 cut(s) 575, 607
AoxI GGCC 3 cut(s) 28, 328, 591
ApeKI GCWGC 3 cut(s) 4, 737, 1379
ApoI RAATTY 3 cut(s) 70, 84, 850
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 595
AsuHPI GGTGA 3 cut(s) 67, 1018, 1273
AvaI CYCGRG 2 cut(s) 575, 607
AxyI CCTNAGG 1 cut(s) 1257
BalI TGGCCA 1 cut(s) 330
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 533
BbvI GCAGC 3 cut(s) 16, 749, 1366
BccI CCATC 4 cut(s) 20, 479, 785, 1284
BceAI ACGGC 4 cut(s) 164, 406, 1068, 1156
BcgI CGANNNNNNTGC 2 cut(s) 1147, 1181
BciT130I CCWGG 7 cut(s) 63, 241, 336, 534, 1323, 1434, 1487
BcnI CCSGG 1 cut(s) 595
BcoDI GTCTC 2 cut(s) 592, 1406
BfaI CTAG 2 cut(s) 825, 1416
BglII AGATCT 1 cut(s) 253
BisI GCNGC 3 cut(s) 5, 738, 1380
BlpI GCTNAGC 1 cut(s) 772
BlsI GCNGC 3 cut(s) 6, 739, 1381
BmcAI AGTACT 2 cut(s) 712, 940
Bme1390I CCNGG 8 cut(s) 63, 241, 336, 534, 595, 1323, 1434, 1487
BmeT110I CYCGRG 2 cut(s) 575, 607
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 3 cut(s) 160, 187, 490
BmrFI CCNGG 8 cut(s) 63, 241, 336, 534, 595, 1323, 1434, 1487
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 4 cut(s) 301, 421, 749, 1149
BmuI ACTGGG 1 cut(s) 702
BpmI CTGGAG 1 cut(s) 1416
Bpu10I CCTNAGC 1 cut(s) 877
Bpu1102I GCTNAGC 1 cut(s) 772
BpuMI CCSGG 1 cut(s) 595
BsaJI CCNNGG 8 cut(s) 17, 62, 96, 335, 532, 1029, 1322, 1485
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 337, 1286
Bse1I ACTGG 2 cut(s) 147, 708
Bse21I CCTNAGG 1 cut(s) 1257
BseBI CCWGG 7 cut(s) 63, 241, 336, 534, 1323, 1434, 1487
BseDI CCNNGG 8 cut(s) 17, 62, 96, 335, 532, 1029, 1322, 1485
BseGI GGATG 5 cut(s) 553, 777, 834, 1153, 1295
BseLI CCNNNNNNNGG 3 cut(s) 182, 337, 1286
BseMII CTCAG 4 cut(s) 24, 891, 999, 1248
BseNI ACTGG 2 cut(s) 147, 708
BseXI GCAGC 3 cut(s) 16, 749, 1366
Bsh1236I CGCG 2 cut(s) 142, 265
BshFI GGCC 3 cut(s) 30, 330, 593
BshNI GGYRCC 1 cut(s) 158
BsiHKCI CYCGRG 2 cut(s) 575, 607
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 3 cut(s) 79, 1138, 1415
BslI CCNNNNNNNGG 3 cut(s) 182, 337, 1286
BsmAI GTCTC 2 cut(s) 592, 1406
BsmFI GGGAC 3 cut(s) 79, 1138, 1415
BsmI GAATGC 1 cut(s) 1419
BsnI GGCC 3 cut(s) 30, 330, 593
BsoBI CYCGRG 2 cut(s) 575, 607
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 4 cut(s) 253, 340, 1249, 1455
Bsp1720I GCTNAGC 1 cut(s) 772
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 4 cut(s) 265, 623, 975, 1007
BspANI GGCC 3 cut(s) 30, 330, 593
BspCNI CTCAG 4 cut(s) 25, 890, 998, 1249
BspFNI CGCG 2 cut(s) 142, 265
BspLI GGNNCC 3 cut(s) 160, 187, 490
BspPI GGATC 3 cut(s) 348, 1244, 1450
BspT107I GGYRCC 1 cut(s) 158
BsrI ACTGG 2 cut(s) 147, 708
BssECI CCNNGG 8 cut(s) 17, 62, 96, 335, 532, 1029, 1322, 1485
BssMI GATC 4 cut(s) 253, 340, 1249, 1455
BssT1I CCWWGG 2 cut(s) 17, 96
Bst2UI CCWGG 7 cut(s) 63, 241, 336, 534, 1323, 1434, 1487
Bst4CI ACNGT 5 cut(s) 48, 112, 374, 472, 1063
Bst6I CTCTTC 1 cut(s) 720
BstC8I GCNNGC 6 cut(s) 123, 144, 177, 261, 332, 907
BstDEI CTNAG 6 cut(s) 33, 772, 877, 985, 1257, 1497
BstDSI CCRYGG 1 cut(s) 17
BstF5I GGATG 5 cut(s) 553, 777, 834, 1153, 1295
BstFNI CGCG 2 cut(s) 142, 265
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 4 cut(s) 256, 343, 1252, 1458
BstMAI GTCTC 2 cut(s) 592, 1406
BstMBI GATC 4 cut(s) 253, 340, 1249, 1455
BstNI CCWGG 7 cut(s) 63, 241, 336, 534, 1323, 1434, 1487
BstNSI RCATGY 2 cut(s) 125, 1444
BstSCI CCNGG 8 cut(s) 61, 239, 334, 532, 593, 1321, 1432, 1485
BstUI CGCG 2 cut(s) 142, 265
BstV1I GCAGC 3 cut(s) 16, 749, 1366
BstX2I RGATCY 3 cut(s) 253, 340, 1455
BstXI CCANNNNNNTGG 1 cut(s) 1329
BstYI RGATCY 3 cut(s) 253, 340, 1455
Bsu36I CCTNAGG 1 cut(s) 1257
BsuRI GGCC 3 cut(s) 30, 330, 593
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 5 cut(s) 553, 777, 834, 1153, 1295
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 4 cut(s) 53, 154, 743, 900
Cac8I GCNNGC 6 cut(s) 123, 144, 177, 261, 332, 907
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 29
CseI GACGC 2 cut(s) 148, 225
Csp6I GTAC 7 cut(s) 37, 244, 711, 724, 939, 1039, 1064
CviAII CATG 9 cut(s) 18, 122, 155, 589, 641, 847, 1169, 1441, 1449
CviQI GTAC 7 cut(s) 37, 244, 711, 724, 939, 1039, 1064
DdeI CTNAG 6 cut(s) 33, 772, 877, 985, 1257, 1497
DpnI GATC 4 cut(s) 255, 342, 1251, 1457
DpnII GATC 4 cut(s) 253, 340, 1249, 1455
DraI TTTAAA 1 cut(s) 1476
DraIII CACNNNGTG 1 cut(s) 48
EaeI YGGCCR 2 cut(s) 328, 591
Eam1104I CTCTTC 1 cut(s) 720
EarI CTCTTC 1 cut(s) 720
EciI GGCGGA 1 cut(s) 996
Eco130I CCWWGG 2 cut(s) 17, 96
Eco24I GRGCYC 1 cut(s) 533
Eco32I GATATC 1 cut(s) 946
Eco81I CCTNAGG 1 cut(s) 1257
Eco88I CYCGRG 2 cut(s) 575, 607
EcoRI GAATTC 1 cut(s) 850
EcoRII CCWGG 7 cut(s) 61, 239, 334, 532, 1321, 1432, 1485
EcoRV GATATC 1 cut(s) 946
EcoT14I CCWWGG 2 cut(s) 17, 96
EcoT22I ATGCAT 1 cut(s) 1164
EcoT38I GRGCYC 1 cut(s) 533
ErhI CCWWGG 2 cut(s) 17, 96
FaeI CATG 9 cut(s) 21, 125, 158, 592, 644, 850, 1172, 1444, 1452
FaqI GGGAC 3 cut(s) 79, 1138, 1415
FatI CATG 9 cut(s) 17, 121, 154, 588, 640, 846, 1168, 1440, 1448
FauI CCCGC 1 cut(s) 258
FauNDI CATATG 1 cut(s) 1347
Fnu4HI GCNGC 3 cut(s) 5, 738, 1380
FokI GGATG 5 cut(s) 560, 764, 841, 1140, 1302
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 3 cut(s) 5, 738, 1380
FspBI CTAG 2 cut(s) 825, 1416
GlaI GCGC 1 cut(s) 264
GluI GCNGC 3 cut(s) 5, 738, 1380
GsuI CTGGAG 1 cut(s) 1416
HaeIII GGCC 3 cut(s) 30, 330, 593
HapII CCGG 1 cut(s) 594
HgaI GACGC 2 cut(s) 148, 225
HhaI GCGC 1 cut(s) 265
Hin1II CATG 9 cut(s) 21, 125, 158, 592, 644, 850, 1172, 1444, 1452
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HindIII AAGCTT 1 cut(s) 769
HinfI GANTC 8 cut(s) 480, 869, 978, 1034, 1100, 1150, 1305, 1466
HpaI GTTAAC 1 cut(s) 931
HpaII CCGG 1 cut(s) 594
HphI GGTGA 3 cut(s) 67, 1018, 1273
Hpy166II GTNNAC 2 cut(s) 385, 931
Hpy188I TCNGA 4 cut(s) 310, 690, 1158, 1304
Hpy188III TCNNGA 2 cut(s) 607, 1256
Hpy8I GTNNAC 2 cut(s) 385, 931
Hpy99I CGWCG 1 cut(s) 378
HpyAV CCTTC 2 cut(s) 98, 1020
HpyCH4III ACNGT 5 cut(s) 48, 112, 374, 472, 1063
HpyF3I CTNAG 6 cut(s) 33, 772, 877, 985, 1257, 1497
Hsp92II CATG 9 cut(s) 21, 125, 158, 592, 644, 850, 1172, 1444, 1452
HspAI GCGC 1 cut(s) 263
KspAI GTTAAC 1 cut(s) 931
Kzo9I GATC 4 cut(s) 253, 340, 1249, 1455
LmnI GCTCC 2 cut(s) 488, 1487
Lsp1109I GCAGC 3 cut(s) 16, 749, 1366
LweI GCATC 4 cut(s) 301, 421, 749, 1149
MaeI CTAG 2 cut(s) 825, 1416
MaeIII GTNAC 4 cut(s) 649, 1219, 1261, 1436
MalI GATC 4 cut(s) 255, 342, 1251, 1457
MboI GATC 4 cut(s) 253, 340, 1249, 1455
MboII GAAGA 7 cut(s) 113, 227, 395, 398, 707, 878, 1513
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 3 cut(s) 253, 340, 1455
MhlI GDGCHC 1 cut(s) 533
MlsI TGGCCA 1 cut(s) 330
MluI ACGCGT 1 cut(s) 140
MluNI TGGCCA 1 cut(s) 330
MlyI GAGTC 1 cut(s) 474
MmeI TCCRAC 4 cut(s) 163, 457, 537, 713
MnlI CCTC 6 cut(s) 214, 268, 1024, 1252, 1263, 1440
Mox20I TGGCCA 1 cut(s) 330
Mph1103I ATGCAT 1 cut(s) 1164
MscI TGGCCA 1 cut(s) 330
MseI TTAA 5 cut(s) 498, 930, 1080, 1239, 1475
MslI CAYNNNNRTG 3 cut(s) 309, 645, 1167
Msp20I TGGCCA 1 cut(s) 330
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 8 cut(s) 63, 241, 336, 534, 595, 1323, 1434, 1487
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 1419
MvaI CCWGG 7 cut(s) 63, 241, 336, 534, 1323, 1434, 1487
MvnI CGCG 2 cut(s) 142, 265
NciI CCSGG 1 cut(s) 595
NcoI CCATGG 1 cut(s) 17
NdeI CATATG 1 cut(s) 1347
NdeII GATC 4 cut(s) 253, 340, 1249, 1455
NlaIII CATG 9 cut(s) 21, 125, 158, 592, 644, 850, 1172, 1444, 1452
NlaIV GGNNCC 3 cut(s) 160, 187, 490
NmuCI GTSAC 1 cut(s) 1261
NsiI ATGCAT 1 cut(s) 1164
NspI RCATGY 2 cut(s) 125, 1444
PaeI GCATGC 1 cut(s) 125
PaeR7I CTCGAG 1 cut(s) 607
PctI GAATGC 1 cut(s) 1419
PfeI GAWTC 7 cut(s) 869, 978, 1034, 1100, 1150, 1305, 1466
PkrI GCNGC 3 cut(s) 6, 739, 1381
PleI GAGTC 1 cut(s) 474
PpsI GAGTC 1 cut(s) 474
PsiI TTATAA 1 cut(s) 836
Psp6I CCWGG 7 cut(s) 61, 239, 334, 532, 1321, 1432, 1485
PspGI CCWGG 7 cut(s) 61, 239, 334, 532, 1321, 1432, 1485
PspN4I GGNNCC 3 cut(s) 160, 187, 490
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 3 cut(s) 253, 340, 1455
RsaI GTAC 7 cut(s) 38, 245, 712, 725, 940, 1040, 1065
RsaNI GTAC 7 cut(s) 37, 244, 711, 724, 939, 1039, 1064
RseI CAYNNNNRTG 3 cut(s) 309, 645, 1167
SaqAI TTAA 5 cut(s) 498, 930, 1080, 1239, 1475
SatI GCNGC 3 cut(s) 5, 738, 1380
Sau3AI GATC 4 cut(s) 253, 340, 1249, 1455
Sau96I GGNCC 1 cut(s) 29
ScaI AGTACT 2 cut(s) 712, 940
SchI GAGTC 1 cut(s) 474
ScrFI CCNGG 8 cut(s) 63, 241, 336, 534, 595, 1323, 1434, 1487
SduI GDGCHC 1 cut(s) 533
SfaNI GCATC 4 cut(s) 301, 421, 749, 1149
Sfr274I CTCGAG 1 cut(s) 607
SlaI CTCGAG 1 cut(s) 607
SmiMI CAYNNNNRTG 3 cut(s) 309, 645, 1167
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
SphI GCATGC 1 cut(s) 125
SsiI CCGC 4 cut(s) 265, 623, 975, 1007
SspMI CTAG 2 cut(s) 825, 1416
StyD4I CCNGG 8 cut(s) 61, 239, 334, 532, 593, 1321, 1432, 1485
StyI CCWWGG 2 cut(s) 17, 96
TaaI ACNGT 5 cut(s) 48, 112, 374, 472, 1063
TaqI TCGA 4 cut(s) 376, 483, 608, 1043
TatI WGTACW 5 cut(s) 36, 710, 723, 938, 1063
TfiI GAWTC 7 cut(s) 869, 978, 1034, 1100, 1150, 1305, 1466
Tru1I TTAA 5 cut(s) 498, 930, 1080, 1239, 1475
Tru9I TTAA 5 cut(s) 498, 930, 1080, 1239, 1475
TscAI CASTG 4 cut(s) 53, 154, 750, 907
TseFI GTSAC 1 cut(s) 1261
TseI GCWGC 3 cut(s) 4, 737, 1379
Tsp45I GTSAC 1 cut(s) 1261
TspDTI ATGAA 6 cut(s) 143, 228, 375, 828, 863, 1113
TspRI CASTG 4 cut(s) 53, 154, 750, 907
XapI RAATTY 3 cut(s) 70, 84, 850
XceI RCATGY 2 cut(s) 125, 1444
XcmI CCANNNNNNNNNTGG 1 cut(s) 15
XhoI CTCGAG 1 cut(s) 607
XspI CTAG 2 cut(s) 825, 1416
ZrmI AGTACT 2 cut(s) 712, 940
Zsp2I ATGCAT 1 cut(s) 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.