Lignin degradation and detoxification of lignin-derived products
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 587, 1368, 1443 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 539 |
| AccI | GTMKAC | 1 cut(s) | 1774 |
| AciI | CCGC | 3 cut(s) | 148, 1011, 1355 |
| AclWI | GGATC | 5 cut(s) | 968, 981, 1549, 1568, 1592 |
| AcoI | YGGCCR | 1 cut(s) | 934 |
| AcsI | RAATTY | 3 cut(s) | 120, 427, 1106 |
| AcuI | CTGAAG | 1 cut(s) | 477 |
| AdeI | CACNNNGTG | 1 cut(s) | 405 |
| AfaI | GTAC | 5 cut(s) | 5, 395, 602, 1082, 1753 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 539, 1311, 1634 |
| AgsI | TTSAA | 6 cut(s) | 167, 228, 1022, 1254, 1438, 1457 |
| AhlI | ACTAGT | 2 cut(s) | 622, 1763 |
| AjnI | CCWGG | 7 cut(s) | 262, 532, 596, 691, 931, 1222, 1669 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 535, 567 |
| AluBI | AGCT | 7 cut(s) | 41, 49, 950, 1128, 1272, 1527, 1784 |
| AluI | AGCT | 7 cut(s) | 41, 49, 950, 1128, 1272, 1527, 1784 |
| Alw26I | GTCTC | 3 cut(s) | 572, 690, 1754 |
| AlwI | GGATC | 5 cut(s) | 968, 981, 1549, 1568, 1592 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 812 |
| AoxI | GGCC | 2 cut(s) | 835, 934 |
| ApeKI | GCWGC | 3 cut(s) | 950, 1094, 1097 |
| ApoI | RAATTY | 3 cut(s) | 120, 427, 1106 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 209, 1452 |
| AspS9I | GGNCC | 2 cut(s) | 266, 386 |
| AsuC2I | CCSGG | 2 cut(s) | 420, 1117 |
| AsuHPI | GGTGA | 5 cut(s) | 145, 205, 817, 1102, 1438 |
| AvaII | GGWCC | 2 cut(s) | 266, 386 |
| BalI | TGGCCA | 1 cut(s) | 936 |
| BamHI | GGATCC | 1 cut(s) | 973 |
| BanII | GRGCYC | 1 cut(s) | 1493 |
| BbvI | GCAGC | 3 cut(s) | 937, 1106, 1109 |
| BccI | CCATC | 4 cut(s) | 377, 638, 895, 1559 |
| BceAI | ACGGC | 1 cut(s) | 763 |
| BciT130I | CCWGG | 7 cut(s) | 264, 534, 598, 693, 933, 1224, 1671 |
| BciVI | GTATCC | 1 cut(s) | 10 |
| BcnI | CCSGG | 2 cut(s) | 420, 1117 |
| BcoDI | GTCTC | 3 cut(s) | 572, 690, 1754 |
| BcuI | ACTAGT | 2 cut(s) | 622, 1763 |
| BfaI | CTAG | 5 cut(s) | 161, 623, 839, 954, 1764 |
| BfmI | CTRYAG | 2 cut(s) | 1149, 1309 |
| BfuI | GTATCC | 1 cut(s) | 10 |
| BisI | GCNGC | 3 cut(s) | 951, 1095, 1098 |
| BlsI | GCNGC | 3 cut(s) | 952, 1096, 1099 |
| Bme1390I | CCNGG | 9 cut(s) | 264, 420, 534, 598, 693, 933, 1117, 1224, 1671 |
| Bme18I | GGWCC | 2 cut(s) | 266, 386 |
| BmgT120I | GGNCC | 2 cut(s) | 266, 386 |
| BmiI | GGNNCC | 3 cut(s) | 544, 847, 975 |
| BmrFI | CCNGG | 9 cut(s) | 264, 420, 534, 598, 693, 933, 1117, 1224, 1671 |
| BmsI | GCATC | 3 cut(s) | 246, 602, 658 |
| BoxI | GACNNNNGTC | 1 cut(s) | 702 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 28, 60 |
| BpmI | CTGGAG | 1 cut(s) | 697 |
| BpuEI | CTTGAG | 2 cut(s) | 949, 1729 |
| BpuMI | CCSGG | 2 cut(s) | 420, 1117 |
| BsaAI | YACGTR | 1 cut(s) | 1534 |
| BsaBI | GATNNNNATC | 1 cut(s) | 524 |
| BsaI | GGTCTC | 1 cut(s) | 572 |
| BsaJI | CCNNGG | 5 cut(s) | 319, 374, 1414, 1468, 1670 |
| BsaWI | WCCGGW | 1 cut(s) | 565 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 282, 312 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 539, 1311, 1634 |
| Bse1I | ACTGG | 3 cut(s) | 497, 714, 991 |
| Bse8I | GATNNNNATC | 1 cut(s) | 524 |
| BseBI | CCWGG | 7 cut(s) | 264, 534, 598, 693, 933, 1224, 1671 |
| BseDI | CCNNGG | 5 cut(s) | 319, 374, 1414, 1468, 1670 |
| BseGI | GGATG | 7 cut(s) | 574, 593, 646, 910, 1219, 1501, 1576 |
| BseJI | GATNNNNATC | 1 cut(s) | 524 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 539, 1311, 1634 |
| BseMII | CTCAG | 2 cut(s) | 59, 1749 |
| BseNI | ACTGG | 3 cut(s) | 497, 714, 991 |
| BseRI | GAGGAG | 1 cut(s) | 902 |
| BseXI | GCAGC | 3 cut(s) | 937, 1106, 1109 |
| BseYI | CCCAGC | 1 cut(s) | 1780 |
| BshFI | GGCC | 2 cut(s) | 837, 936 |
| BsiSI | CCGG | 3 cut(s) | 420, 566, 1117 |
| BslFI | GGGAC | 3 cut(s) | 1142, 1432, 1486 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 539, 1311, 1634 |
| BsmAI | GTCTC | 3 cut(s) | 572, 690, 1754 |
| BsmFI | GGGAC | 3 cut(s) | 1142, 1432, 1486 |
| BsnI | GGCC | 2 cut(s) | 837, 936 |
| Bso31I | GGTCTC | 1 cut(s) | 572 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1493 |
| Bsp143I | GATC | 5 cut(s) | 56, 973, 1541, 1573, 1597 |
| BspACI | CCGC | 3 cut(s) | 148, 1011, 1355 |
| BspANI | GGCC | 2 cut(s) | 837, 936 |
| BspCNI | CTCAG | 2 cut(s) | 58, 1750 |
| BspLI | GGNNCC | 3 cut(s) | 544, 847, 975 |
| BspPI | GGATC | 5 cut(s) | 968, 981, 1549, 1568, 1592 |
| BspTNI | GGTCTC | 1 cut(s) | 572 |
| BsrI | ACTGG | 3 cut(s) | 497, 714, 991 |
| BssECI | CCNNGG | 5 cut(s) | 319, 374, 1414, 1468, 1670 |
| BssMI | GATC | 5 cut(s) | 56, 973, 1541, 1573, 1597 |
| BssT1I | CCWWGG | 3 cut(s) | 319, 1414, 1468 |
| Bst2UI | CCWGG | 7 cut(s) | 264, 534, 598, 693, 933, 1224, 1671 |
| Bst4CI | ACNGT | 8 cut(s) | 222, 298, 508, 829, 1192, 1411, 1691, 1832 |
| Bst6I | CTCTTC | 2 cut(s) | 1077, 1255 |
| BstBAI | YACGTR | 1 cut(s) | 1534 |
| BstC8I | GCNNGC | 1 cut(s) | 480 |
| BstDEI | CTNAG | 3 cut(s) | 45, 1298, 1758 |
| BstDSI | CCRYGG | 1 cut(s) | 374 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1309 |
| BstF5I | GGATG | 7 cut(s) | 574, 593, 646, 910, 1219, 1501, 1576 |
| BstKTI | GATC | 5 cut(s) | 59, 976, 1544, 1576, 1600 |
| BstMAI | GTCTC | 3 cut(s) | 572, 690, 1754 |
| BstMBI | GATC | 5 cut(s) | 56, 973, 1541, 1573, 1597 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 896 |
| BstNI | CCWGG | 7 cut(s) | 264, 534, 598, 693, 933, 1224, 1671 |
| BstNSI | RCATGY | 2 cut(s) | 482, 1792 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 702 |
| BstSCI | CCNGG | 9 cut(s) | 262, 418, 532, 596, 691, 931, 1115, 1222, 1669 |
| BstSFI | CTRYAG | 2 cut(s) | 1149, 1309 |
| BstV1I | GCAGC | 3 cut(s) | 937, 1106, 1109 |
| BstX2I | RGATCY | 2 cut(s) | 973, 1541 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1084 |
| BstYI | RGATCY | 2 cut(s) | 973, 1541 |
| BsuI | GTATCC | 1 cut(s) | 10 |
| BsuRI | GGCC | 2 cut(s) | 837, 936 |
| BtgI | CCRYGG | 1 cut(s) | 374 |
| BtgZI | GCGATG | 1 cut(s) | 914 |
| BtsCI | GGATG | 7 cut(s) | 574, 593, 646, 910, 1219, 1501, 1576 |
| BtsI | GCAGTG | 2 cut(s) | 410, 1725 |
| BtsIMutI | CAGTG | 8 cut(s) | 410, 453, 504, 721, 892, 1407, 1687, 1725 |
| Cac8I | GCNNGC | 1 cut(s) | 480 |
| CaiI | CAGNNNCTG | 1 cut(s) | 812 |
| Cfr13I | GGNCC | 2 cut(s) | 266, 386 |
| CseI | GACGC | 1 cut(s) | 33 |
| Csp6I | GTAC | 5 cut(s) | 4, 394, 601, 1081, 1752 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1729, 1764 |
| CviQI | GTAC | 5 cut(s) | 4, 394, 601, 1081, 1752 |
| DdeI | CTNAG | 3 cut(s) | 45, 1298, 1758 |
| DpnI | GATC | 5 cut(s) | 58, 975, 1543, 1575, 1599 |
| DpnII | GATC | 5 cut(s) | 56, 973, 1541, 1573, 1597 |
| DraIII | CACNNNGTG | 1 cut(s) | 405 |
| EaeI | YGGCCR | 1 cut(s) | 934 |
| Eam1104I | CTCTTC | 2 cut(s) | 1077, 1255 |
| EarI | CTCTTC | 2 cut(s) | 1077, 1255 |
| Eco130I | CCWWGG | 3 cut(s) | 319, 1414, 1468 |
| Eco24I | GRGCYC | 1 cut(s) | 1493 |
| Eco31I | GGTCTC | 1 cut(s) | 572 |
| Eco32I | GATATC | 1 cut(s) | 613 |
| Eco47I | GGWCC | 2 cut(s) | 266, 386 |
| Eco57I | CTGAAG | 1 cut(s) | 477 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1309 |
| EcoRII | CCWGG | 7 cut(s) | 262, 532, 596, 691, 931, 1222, 1669 |
| EcoRV | GATATC | 1 cut(s) | 613 |
| EcoT14I | CCWWGG | 3 cut(s) | 319, 1414, 1468 |
| EcoT22I | ATGCAT | 2 cut(s) | 1512, 1518 |
| EcoT38I | GRGCYC | 1 cut(s) | 1493 |
| ErhI | CCWWGG | 3 cut(s) | 319, 1414, 1468 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 224, 256 |
| FaqI | GGGAC | 3 cut(s) | 1142, 1432, 1486 |
| FauNDI | CATATG | 1 cut(s) | 1512 |
| FblI | GTMKAC | 1 cut(s) | 1774 |
| Fnu4HI | GCNGC | 3 cut(s) | 951, 1095, 1098 |
| FokI | GGATG | 7 cut(s) | 580, 581, 653, 917, 1206, 1488, 1583 |
| FriOI | GRGCYC | 1 cut(s) | 1493 |
| Fsp4HI | GCNGC | 3 cut(s) | 951, 1095, 1098 |
| FspBI | CTAG | 5 cut(s) | 161, 623, 839, 954, 1764 |
| GluI | GCNGC | 3 cut(s) | 951, 1095, 1098 |
| GsaI | CCCAGC | 1 cut(s) | 1784 |
| GsuI | CTGGAG | 1 cut(s) | 697 |
| HaeIII | GGCC | 2 cut(s) | 837, 936 |
| HapII | CCGG | 3 cut(s) | 420, 566, 1117 |
| HgaI | GACGC | 1 cut(s) | 33 |
| HincII | GTYRAC | 2 cut(s) | 742, 1775 |
| HindII | GTYRAC | 2 cut(s) | 742, 1775 |
| HindIII | AAGCTT | 1 cut(s) | 1126 |
| HinfI | GANTC | 3 cut(s) | 1201, 1448, 1814 |
| HpaII | CCGG | 3 cut(s) | 420, 566, 1117 |
| HphI | GGTGA | 5 cut(s) | 145, 205, 817, 1102, 1438 |
| Hpy166II | GTNNAC | 9 cut(s) | 153, 250, 283, 301, 742, 1217, 1330, 1407, 1775 |
| Hpy188I | TCNGA | 4 cut(s) | 382, 667, 1047, 1652 |
| Hpy188III | TCNNGA | 5 cut(s) | 269, 389, 977, 1346, 1741 |
| Hpy8I | GTNNAC | 9 cut(s) | 153, 250, 283, 301, 742, 1217, 1330, 1407, 1775 |
| Hpy99I | CGWCG | 2 cut(s) | 27, 1776 |
| HpyAV | CCTTC | 6 cut(s) | 161, 455, 599, 1065, 1368, 1480 |
| HpyCH4III | ACNGT | 8 cut(s) | 222, 298, 508, 829, 1192, 1411, 1691, 1832 |
| HpyCH4IV | ACGT | 2 cut(s) | 303, 1533 |
| HpyCH4V | TGCA | 7 cut(s) | 178, 593, 779, 806, 1094, 1510, 1516 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 896 |
| HpyF3I | CTNAG | 3 cut(s) | 45, 1298, 1758 |
| HpySE526I | ACGT | 2 cut(s) | 303, 1533 |
| Kzo9I | GATC | 5 cut(s) | 56, 973, 1541, 1573, 1597 |
| LmnI | GCTCC | 2 cut(s) | 716, 845 |
| Lsp1109I | GCAGC | 3 cut(s) | 937, 1106, 1109 |
| LweI | GCATC | 3 cut(s) | 246, 602, 658 |
| MaeI | CTAG | 5 cut(s) | 161, 623, 839, 954, 1764 |
| MaeII | ACGT | 2 cut(s) | 303, 1533 |
| MaeIII | GTNAC | 5 cut(s) | 488, 982, 1006, 1168, 1609 |
| MalI | GATC | 5 cut(s) | 58, 975, 1543, 1575, 1599 |
| MboI | GATC | 5 cut(s) | 56, 973, 1541, 1573, 1597 |
| MflI | RGATCY | 2 cut(s) | 973, 1541 |
| MhlI | GDGCHC | 1 cut(s) | 1493 |
| MlsI | TGGCCA | 1 cut(s) | 936 |
| MluNI | TGGCCA | 1 cut(s) | 936 |
| MmeI | TCCRAC | 3 cut(s) | 520, 1088, 1519 |
| Mox20I | TGGCCA | 1 cut(s) | 936 |
| Mph1103I | ATGCAT | 2 cut(s) | 1512, 1518 |
| MroXI | GAANNNNTTC | 2 cut(s) | 209, 1452 |
| MscI | TGGCCA | 1 cut(s) | 936 |
| MseI | TTAA | 6 cut(s) | 306, 1122, 1163, 1278, 1497, 1587 |
| MslI | CAYNNNNRTG | 5 cut(s) | 183, 348, 666, 1002, 1515 |
| Msp20I | TGGCCA | 1 cut(s) | 936 |
| MspI | CCGG | 3 cut(s) | 420, 566, 1117 |
| MspR9I | CCNGG | 9 cut(s) | 264, 420, 534, 598, 693, 933, 1117, 1224, 1671 |
| MvaI | CCWGG | 7 cut(s) | 264, 534, 598, 693, 933, 1224, 1671 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 896 |
| NciI | CCSGG | 2 cut(s) | 420, 1117 |
| NdeI | CATATG | 1 cut(s) | 1512 |
| NdeII | GATC | 5 cut(s) | 56, 973, 1541, 1573, 1597 |
| NlaIV | GGNNCC | 3 cut(s) | 544, 847, 975 |
| NmuCI | GTSAC | 2 cut(s) | 488, 982 |
| NsiI | ATGCAT | 2 cut(s) | 1512, 1518 |
| NspI | RCATGY | 2 cut(s) | 482, 1792 |
| PaeI | GCATGC | 1 cut(s) | 482 |
| PdmI | GAANNNNTTC | 2 cut(s) | 209, 1452 |
| PfeI | GAWTC | 3 cut(s) | 1201, 1448, 1814 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 539 |
| PfoI | TCCNGGA | 2 cut(s) | 418, 1115 |
| PkrI | GCNGC | 3 cut(s) | 952, 1096, 1099 |
| Ppu21I | YACGTR | 1 cut(s) | 1534 |
| PshAI | GACNNNNGTC | 1 cut(s) | 702 |
| PsiI | TTATAA | 3 cut(s) | 587, 1368, 1443 |
| Psp6I | CCWGG | 7 cut(s) | 262, 532, 596, 691, 931, 1222, 1669 |
| PspFI | CCCAGC | 1 cut(s) | 1780 |
| PspGI | CCWGG | 7 cut(s) | 262, 532, 596, 691, 931, 1222, 1669 |
| PspN4I | GGNNCC | 3 cut(s) | 544, 847, 975 |
| PspPI | GGNCC | 2 cut(s) | 266, 386 |
| PstNI | CAGNNNCTG | 1 cut(s) | 812 |
| PsuI | RGATCY | 2 cut(s) | 973, 1541 |
| RsaI | GTAC | 5 cut(s) | 5, 395, 602, 1082, 1753 |
| RsaNI | GTAC | 5 cut(s) | 4, 394, 601, 1081, 1752 |
| RseI | CAYNNNNRTG | 5 cut(s) | 183, 348, 666, 1002, 1515 |
| SalI | GTCGAC | 1 cut(s) | 1773 |
| SaqAI | TTAA | 6 cut(s) | 306, 1122, 1163, 1278, 1497, 1587 |
| SatI | GCNGC | 3 cut(s) | 951, 1095, 1098 |
| Sau3AI | GATC | 5 cut(s) | 56, 973, 1541, 1573, 1597 |
| Sau96I | GGNCC | 2 cut(s) | 266, 386 |
| ScrFI | CCNGG | 9 cut(s) | 264, 420, 534, 598, 693, 933, 1117, 1224, 1671 |
| SduI | GDGCHC | 1 cut(s) | 1493 |
| SfaNI | GCATC | 3 cut(s) | 246, 602, 658 |
| SfcI | CTRYAG | 2 cut(s) | 1149, 1309 |
| SinI | GGWCC | 2 cut(s) | 266, 386 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 183, 348, 666, 1002, 1515 |
| SmlI | CTYRAG | 2 cut(s) | 964, 1708 |
| SmoI | CTYRAG | 2 cut(s) | 964, 1708 |
| SpeI | ACTAGT | 2 cut(s) | 622, 1763 |
| SphI | GCATGC | 1 cut(s) | 482 |
| SsiI | CCGC | 3 cut(s) | 148, 1011, 1355 |
| SspI | AATATT | 2 cut(s) | 1399, 1843 |
| SspMI | CTAG | 5 cut(s) | 161, 623, 839, 954, 1764 |
| StyD4I | CCNGG | 9 cut(s) | 262, 418, 532, 596, 691, 931, 1115, 1222, 1669 |
| StyI | CCWWGG | 3 cut(s) | 319, 1414, 1468 |
| TaaI | ACNGT | 8 cut(s) | 222, 298, 508, 829, 1192, 1411, 1691, 1832 |
| TaiI | ACGT | 2 cut(s) | 306, 1536 |
| TaqI | TCGA | 4 cut(s) | 55, 104, 733, 1774 |
| TatI | WGTACW | 2 cut(s) | 393, 1080 |
| TfiI | GAWTC | 3 cut(s) | 1201, 1448, 1814 |
| Tru1I | TTAA | 6 cut(s) | 306, 1122, 1163, 1278, 1497, 1587 |
| Tru9I | TTAA | 6 cut(s) | 306, 1122, 1163, 1278, 1497, 1587 |
| TscAI | CASTG | 8 cut(s) | 410, 460, 511, 721, 892, 1414, 1694, 1732 |
| TseFI | GTSAC | 2 cut(s) | 488, 982 |
| TseI | GCWGC | 3 cut(s) | 950, 1094, 1097 |
| Tsp45I | GTSAC | 2 cut(s) | 488, 982 |
| TspGWI | ACGGA | 3 cut(s) | 363, 858, 1352 |
| TspRI | CASTG | 8 cut(s) | 410, 460, 511, 721, 892, 1414, 1694, 1732 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 539 |
| VpaK11BI | GGWCC | 2 cut(s) | 266, 386 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1309 |
| XapI | RAATTY | 3 cut(s) | 120, 427, 1106 |
| XceI | RCATGY | 2 cut(s) | 482, 1792 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 326, 372 |
| XmiI | GTMKAC | 1 cut(s) | 1774 |
| XmnI | GAANNNNTTC | 2 cut(s) | 209, 1452 |
| XspI | CTAG | 5 cut(s) | 161, 623, 839, 954, 1764 |
| Zsp2I | ATGCAT | 2 cut(s) | 1512, 1518 |