Rh6BG194800

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000320
Physical Location & Seq
Reverse (-)
36570330 .. 36583677
13348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG194800.1

Sequence Viewer

Length: 1791 bp
ATGAAGCACCAAAAGACATGCCCATTGTCAACTACTGAGCTTCTGGTGTTTCTGTTTCTTATAGTGCAGTTCCTCTCCCTGCTGGTTCAAGCCGAAGTCCATTACTATGATTTTGTTGTAAGGGAGAAAAATTACACGAGGCTGTGTGAGACAAAGAGCATTTTAGTTGTGAATGATAGTTTCCCAGGACCGGAGATACGAGTTCACAAAGGTGATACAGTTTATGTCAACGTGCATAACCAAGGAGATTATGCATTCACCATTCACTGGCATGGGATAAAGCAACCACGAAATCCATGGTCAGATGGTCCATCTTACATCACACAGTGTCCAATCCCACCTGGAACAAACTTCACCTATGAAGTATTATTGTCCATAGAAGAAGGAACTTTATGGTGGCATGCACATAGTGATTGGACTAGAGCTACTGTTCATGGTGCTATTGTTATCTTGCCTGCTATTGGAACCACATTCCCATTTCCGCAACCTGATGAAGACGAAGTTCTTGTAATTGCATCTTGGTACACAGGAGATATAAAAGAACTTATTGATGAGTCTATACAAAATGGTACCGACTTACCCCATTCAGATGCTTACACTTTAAATGGCCAGCCAGGAGATTTTTGTGCATGCTCCAATGGAACAGCGTATCGTCGTATAGTGGATTACGGCAAGACATATCTTCTTCGTATAGTCAACGGAAACATGAATGCAGAACACTTCTTTGCCGTTGCAGAGCATAGTCTCACTGTGGTTGGACTAGATGGAGATTACATTAAACCCATAAACACTGCTTACATAGTCATAAGTCCTGGACAAACGATGGATGTCTTGCTAGTAGCAAACCAGTCTCTTGGCCAATATTATATGGCTATTAGACAATACTCAAGTGAGGACATTGCAGTCACTAGATTTGACCATGCAAATGTTACTGCAATCCTTGAATACAGAGGCGACTATACATATGAGACATCTCCTGTATTTCCATCTACTCTTCCTATGTACTTGGACAAAGCAGCAGCACTCAAATTCACATACCAACTTCGAAGCTTGGCTACTCCAGAGTACCCTGTAAATGTTCCACTCGACATCACTACTAGAATGTATATTACGGCGTCGATGAATGTACTTCCTTGTGACCATACAGGCTGTGAAATTACTGAGAATATCGCTTCAAGCCTAAATAATGTTAGTTGGGTCGACACAAAACCAACCACAAATGTCTTGGAAGCCTACTATAGGAACATAAGCGGGGCTTATGAATCAAATTTCCCAGACCAGCCGACTTTGTTTTATAATTTTACAGCAGATTCTGTCCCCGACTATTATGATTACACAGCACAAGGGACAAAGGTGAAAGTGTTGAACTATAATGAATCGGTTGAAATTGTGTTCCAAGGGACTAATGTGATGGACGGTTCTGTCAATCATCCAATGCATATGCATGGATATAGCTTTTATGTGGTTGGATATGGTTTTGGAAATTTTGACAATGAGACTGATCCCAAGGGGTATAATTTGGTAGATCCTCCTAAAGTAACTACCTTTGGAGTTCCCAAGAGAGGATGGTTAGCAATCAGATTCAAAGCAACTAATCCTGGAGTGTGGTTTTGGCATTGTCATTTCGAGAGACACTTAACTTGGGGTATGAACACTGCTTTTATAGTGAAAAATGGGGGCACTCCGGAGACTAGCATTCGCGAACCACCAACTTACATGCCCCCATGTATTATTCCATTGAATTCTCGTGTCCACAGCTATGGTGAATTTATTGAAGAGAAAAGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

596

Amino Acids

67.47

Weight (kDa)

5.26

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 40 - 152 1.2e-40 Multicopper oxidase
Cu-oxidase PF00394 166 - 318 2.4e-34 Multicopper oxidase
Cu-oxidase_2 PF07731 442 - 558 9.6e-40 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1296
AasI GACNNNNNNGTC 2 cut(s) 902, 1421
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 267
AccI GTMKAC 1 cut(s) 1200
AccII CGCG 1 cut(s) 1701
AccIII TCCGGA 1 cut(s) 1684
AciI CCGC 2 cut(s) 482, 1251
AclWI GGATC 2 cut(s) 1496, 1520
AcoI YGGCCR 2 cut(s) 607, 856
AcsI RAATTY 5 cut(s) 1028, 1267, 1483, 1741, 1766
AcyI GRCGYC 1 cut(s) 1115
AdeI CACNNNGTG 2 cut(s) 327, 410
AfaI GTAC 5 cut(s) 524, 571, 1004, 1067, 1128
AfiI CCNNNNNNNGG 5 cut(s) 190, 267, 461, 1239, 1562
AgsI TTSAA 8 cut(s) 89, 944, 1176, 1366, 1385, 1585, 1741, 1775
AjnI CCWGG 5 cut(s) 184, 340, 613, 811, 1597
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 5 cut(s) 40, 425, 1050, 1455, 1758
AluI AGCT 5 cut(s) 40, 425, 1050, 1455, 1758
Alw26I GTCTC 7 cut(s) 143, 749, 855, 962, 1490, 1624, 1682
AlwI GGATC 2 cut(s) 1496, 1520
AlwNI CAGNNNCTG 1 cut(s) 1313
Aor13HI TCCGGA 1 cut(s) 1684
AoxI GGCC 2 cut(s) 607, 856
ApeKI GCWGC 2 cut(s) 1016, 1019
ApoI RAATTY 5 cut(s) 1028, 1267, 1483, 1741, 1766
Asp718I GGTACC 1 cut(s) 569
AspS9I GGNCC 2 cut(s) 188, 308
AsuHPI GGTGA 5 cut(s) 224, 250, 346, 1366, 1775
AsuII TTCGAA 1 cut(s) 1045
AvaII GGWCC 2 cut(s) 188, 308
BaeGI GKGCMC 1 cut(s) 1682
BalI TGGCCA 2 cut(s) 609, 858
BanI GGYRCC 1 cut(s) 569
BarI GAAGNNNNNNTAC 2 cut(s) 1039, 1071
BauI CACGAG 2 cut(s) 136, 1746
BbsI GAAGAC 1 cut(s) 501
BbvI GCAGC 2 cut(s) 1028, 1031
BccI CCATC 7 cut(s) 299, 319, 758, 817, 994, 1405, 1560
BceAI ACGGC 3 cut(s) 685, 713, 1128
BciT130I CCWGG 5 cut(s) 186, 342, 615, 813, 1599
BcoDI GTCTC 7 cut(s) 143, 749, 855, 962, 1490, 1624, 1682
BfaI CTAG 6 cut(s) 420, 761, 836, 909, 1098, 1692
BfmI CTRYAG 1 cut(s) 1237
BisI GCNGC 2 cut(s) 1017, 1020
BlsI GCNGC 2 cut(s) 1018, 1021
Bme1390I CCNGG 5 cut(s) 186, 342, 615, 813, 1599
Bme18I GGWCC 2 cut(s) 188, 308
BmgT120I GGNCC 2 cut(s) 188, 308
BmiI GGNNCC 2 cut(s) 466, 571
BmrFI CCNGG 5 cut(s) 186, 342, 615, 813, 1599
BmsI GCATC 2 cut(s) 524, 580
BpiI GAAGAC 1 cut(s) 501
BpmI CTGGAG 2 cut(s) 1044, 1620
Bpu14I TTCGAA 1 cut(s) 1045
BpuEI CTTGAG 1 cut(s) 871
BsaHI GRCGYC 1 cut(s) 1115
BsaJI CCNNGG 5 cut(s) 184, 241, 296, 1396, 1506
BsaWI WCCGGW 2 cut(s) 190, 1684
Bsc4I CCNNNNNNNGG 5 cut(s) 190, 267, 461, 1239, 1562
Bse1I ACTGG 2 cut(s) 272, 847
Bse3DI GCAATG 1 cut(s) 897
BseAI TCCGGA 1 cut(s) 1684
BseBI CCWGG 5 cut(s) 186, 342, 615, 813, 1599
BseDI CCNNGG 5 cut(s) 184, 241, 296, 1396, 1506
BseGI GGATG 3 cut(s) 832, 1429, 1571
BseLI CCNNNNNNNGG 5 cut(s) 190, 267, 461, 1239, 1562
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 2 cut(s) 27, 1152
BseNI ACTGG 2 cut(s) 272, 847
BseSI GKGCMC 1 cut(s) 1682
BseXI GCAGC 2 cut(s) 1028, 1031
BsgI GTGCAG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 1701
BshFI GGCC 2 cut(s) 609, 858
BshNI GGYRCC 1 cut(s) 569
BsiSI CCGG 2 cut(s) 191, 1685
BslFI GGGAC 3 cut(s) 1301, 1360, 1414
BslI CCNNNNNNNGG 5 cut(s) 190, 267, 461, 1239, 1562
BsmAI GTCTC 7 cut(s) 143, 749, 855, 962, 1490, 1624, 1682
BsmFI GGGAC 3 cut(s) 1301, 1360, 1414
BsmI GAATGC 3 cut(s) 254, 715, 1695
BsnI GGCC 2 cut(s) 609, 858
Bsp119I TTCGAA 1 cut(s) 1045
Bsp1286I GDGCHC 1 cut(s) 1682
Bsp13I TCCGGA 1 cut(s) 1684
Bsp143I GATC 2 cut(s) 1501, 1525
Bsp19I CCATGG 1 cut(s) 296
Bsp68I TCGCGA 1 cut(s) 1701
BspACI CCGC 2 cut(s) 482, 1251
BspANI GGCC 2 cut(s) 609, 858
BspCNI CTCAG 2 cut(s) 28, 1153
BspEI TCCGGA 1 cut(s) 1684
BspFNI CGCG 1 cut(s) 1701
BspLI GGNNCC 2 cut(s) 466, 571
BspPI GGATC 2 cut(s) 1496, 1520
BspT104I TTCGAA 1 cut(s) 1045
BspT107I GGYRCC 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 897
BsrI ACTGG 2 cut(s) 272, 847
BssECI CCNNGG 5 cut(s) 184, 241, 296, 1396, 1506
BssMI GATC 2 cut(s) 1501, 1525
BssNI GRCGYC 1 cut(s) 1115
BssSI CACGAG 2 cut(s) 136, 1746
BssT1I CCWWGG 4 cut(s) 241, 296, 1396, 1506
Bst2BI CACGAG 2 cut(s) 136, 1746
Bst2UI CCWGG 5 cut(s) 186, 342, 615, 813, 1599
Bst4CI ACNGT 5 cut(s) 220, 327, 430, 751, 1418
Bst6I CTCTTC 2 cut(s) 999, 1770
BstACI GRCGYC 1 cut(s) 1115
BstBI TTCGAA 1 cut(s) 1045
BstC8I GCNNGC 4 cut(s) 402, 456, 611, 631
BstDEI CTNAG 2 cut(s) 36, 1161
BstDSI CCRYGG 1 cut(s) 296
BstENI CCTNNNNNAGG 1 cut(s) 1237
BstF5I GGATG 3 cut(s) 832, 1429, 1571
BstFNI CGCG 1 cut(s) 1701
BstKTI GATC 2 cut(s) 1504, 1528
BstMAI GTCTC 7 cut(s) 143, 749, 855, 962, 1490, 1624, 1682
BstMBI GATC 2 cut(s) 1501, 1525
BstNI CCWGG 5 cut(s) 186, 342, 615, 813, 1599
BstNSI RCATGY 4 cut(s) 21, 404, 633, 1720
BstSCI CCNGG 5 cut(s) 184, 340, 613, 811, 1597
BstSFI CTRYAG 1 cut(s) 1237
BstSLI GKGCMC 1 cut(s) 1682
BstUI CGCG 1 cut(s) 1701
BstV1I GCAGC 2 cut(s) 1028, 1031
BstV2I GAAGAC 1 cut(s) 501
BstX2I RGATCY 1 cut(s) 1525
BstXI CCANNNNNNTGG 2 cut(s) 854, 1760
BstYI RGATCY 1 cut(s) 1525
BsuRI GGCC 2 cut(s) 609, 858
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 3 cut(s) 832, 1429, 1571
BtsI GCAGTG 2 cut(s) 789, 1653
BtsIMutI CAGTG 5 cut(s) 265, 332, 747, 789, 1653
BtuMI TCGCGA 1 cut(s) 1701
Cac8I GCNNGC 4 cut(s) 402, 456, 611, 631
CaiI CAGNNNCTG 1 cut(s) 1313
Cfr13I GGNCC 2 cut(s) 188, 308
CseI GACGC 1 cut(s) 1104
Csp6I GTAC 5 cut(s) 523, 570, 1003, 1066, 1127
CviQI GTAC 5 cut(s) 523, 570, 1003, 1066, 1127
DdeI CTNAG 2 cut(s) 36, 1161
DpnI GATC 2 cut(s) 1503, 1527
DpnII GATC 2 cut(s) 1501, 1525
DraI TTTAAA 1 cut(s) 603
DraIII CACNNNGTG 2 cut(s) 327, 410
DrdI GACNNNNNNGTC 2 cut(s) 902, 1421
DseDI GACNNNNNNGTC 2 cut(s) 902, 1421
EaeI YGGCCR 2 cut(s) 607, 856
Eam1104I CTCTTC 2 cut(s) 999, 1770
EarI CTCTTC 2 cut(s) 999, 1770
Eco130I CCWWGG 4 cut(s) 241, 296, 1396, 1506
Eco47I GGWCC 2 cut(s) 188, 308
EcoNI CCTNNNNNAGG 1 cut(s) 1237
EcoRI GAATTC 1 cut(s) 1741
EcoRII CCWGG 5 cut(s) 184, 340, 613, 811, 1597
EcoT14I CCWWGG 4 cut(s) 241, 296, 1396, 1506
EcoT22I ATGCAT 3 cut(s) 256, 1440, 1446
ErhI CCWWGG 4 cut(s) 241, 296, 1396, 1506
FalI AAGNNNNNCTT 2 cut(s) 1240, 1272
FaqI GGGAC 3 cut(s) 1301, 1360, 1414
FauI CCCGC 1 cut(s) 1244
FauNDI CATATG 2 cut(s) 964, 1440
FblI GTMKAC 1 cut(s) 1200
Fnu4HI GCNGC 2 cut(s) 1017, 1020
FokI GGATG 3 cut(s) 839, 1416, 1578
Fsp4HI GCNGC 2 cut(s) 1017, 1020
FspBI CTAG 6 cut(s) 420, 761, 836, 909, 1098, 1692
GluI GCNGC 2 cut(s) 1017, 1020
GsuI CTGGAG 2 cut(s) 1044, 1620
HaeIII GGCC 2 cut(s) 609, 858
HapII CCGG 2 cut(s) 191, 1685
HgaI GACGC 1 cut(s) 1104
Hin1I GRCGYC 1 cut(s) 1115
HincII GTYRAC 4 cut(s) 30, 229, 697, 1201
HindII GTYRAC 4 cut(s) 30, 229, 697, 1201
HindIII AAGCTT 1 cut(s) 1048
HinfI GANTC 5 cut(s) 554, 1262, 1310, 1376, 1581
HpaII CCGG 2 cut(s) 191, 1685
HphI GGTGA 5 cut(s) 224, 250, 346, 1366, 1775
Hpy166II GTNNAC 7 cut(s) 30, 205, 229, 525, 697, 1201, 1753
Hpy188I TCNGA 3 cut(s) 304, 589, 1580
Hpy188III TCNNGA 4 cut(s) 1061, 1627, 1685, 1700
Hpy8I GTNNAC 7 cut(s) 30, 205, 229, 525, 697, 1201, 1753
Hpy99I CGWCG 2 cut(s) 657, 1120
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 5 cut(s) 220, 327, 430, 751, 1418
HpyCH4IV ACGT 1 cut(s) 231
HpyF3I CTNAG 2 cut(s) 36, 1161
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 1115
Kpn2I TCCGGA 1 cut(s) 1684
KpnI GGTACC 1 cut(s) 573
Kzo9I GATC 2 cut(s) 1501, 1525
LmnI GCTCC 1 cut(s) 638
Lsp1109I GCAGC 2 cut(s) 1028, 1031
LweI GCATC 2 cut(s) 524, 580
MaeI CTAG 6 cut(s) 420, 761, 836, 909, 1098, 1692
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 4 cut(s) 904, 928, 1136, 1537
MalI GATC 2 cut(s) 1503, 1527
MboI GATC 2 cut(s) 1501, 1525
MboII GAAGA 6 cut(s) 392, 506, 674, 677, 986, 1787
MflI RGATCY 1 cut(s) 1525
MhlI GDGCHC 1 cut(s) 1682
MlsI TGGCCA 2 cut(s) 609, 858
MluNI TGGCCA 2 cut(s) 609, 858
MlyI GAGTC 1 cut(s) 563
MmeI TCCRAC 2 cut(s) 736, 1447
MnlI CCTC 6 cut(s) 83, 132, 886, 944, 1539, 1556
Mox20I TGGCCA 2 cut(s) 609, 858
Mph1103I ATGCAT 3 cut(s) 256, 1440, 1446
MroI TCCGGA 1 cut(s) 1684
MscI TGGCCA 2 cut(s) 609, 858
MseI TTAA 3 cut(s) 602, 777, 1637
MslI CAYNNNNRTG 7 cut(s) 105, 210, 270, 588, 924, 1443, 1758
Msp20I TGGCCA 2 cut(s) 609, 858
MspI CCGG 2 cut(s) 191, 1685
MspR9I CCNGG 5 cut(s) 186, 342, 615, 813, 1599
Mva1269I GAATGC 3 cut(s) 254, 715, 1695
MvaI CCWGG 5 cut(s) 186, 342, 615, 813, 1599
MvnI CGCG 1 cut(s) 1701
NcoI CCATGG 1 cut(s) 296
NdeI CATATG 2 cut(s) 964, 1440
NdeII GATC 2 cut(s) 1501, 1525
NlaIV GGNNCC 2 cut(s) 466, 571
NmuCI GTSAC 2 cut(s) 904, 1136
NruI TCGCGA 1 cut(s) 1701
NsiI ATGCAT 3 cut(s) 256, 1440, 1446
NspI RCATGY 4 cut(s) 21, 404, 633, 1720
NspV TTCGAA 1 cut(s) 1045
OliI CACNNNNGTG 1 cut(s) 210
PaeI GCATGC 2 cut(s) 404, 633
PctI GAATGC 3 cut(s) 254, 715, 1695
PfeI GAWTC 4 cut(s) 1262, 1310, 1376, 1581
PflMI CCANNNNNTGG 1 cut(s) 267
PfoI TCCNGGA 2 cut(s) 811, 1597
PkrI GCNGC 2 cut(s) 1018, 1021
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
PsiI TTATAA 1 cut(s) 1296
Psp6I CCWGG 5 cut(s) 184, 340, 613, 811, 1597
PspGI CCWGG 5 cut(s) 184, 340, 613, 811, 1597
PspN4I GGNNCC 2 cut(s) 466, 571
PspPI GGNCC 2 cut(s) 188, 308
PstNI CAGNNNCTG 1 cut(s) 1313
PsuI RGATCY 1 cut(s) 1525
RruI TCGCGA 1 cut(s) 1701
RsaI GTAC 5 cut(s) 524, 571, 1004, 1067, 1128
RsaNI GTAC 5 cut(s) 523, 570, 1003, 1066, 1127
RseI CAYNNNNRTG 7 cut(s) 105, 210, 270, 588, 924, 1443, 1758
SalI GTCGAC 1 cut(s) 1199
SaqAI TTAA 3 cut(s) 602, 777, 1637
SatI GCNGC 2 cut(s) 1017, 1020
Sau3AI GATC 2 cut(s) 1501, 1525
Sau96I GGNCC 2 cut(s) 188, 308
SchI GAGTC 1 cut(s) 563
ScrFI CCNGG 5 cut(s) 186, 342, 615, 813, 1599
SduI GDGCHC 1 cut(s) 1682
SfaNI GCATC 2 cut(s) 524, 580
SfcI CTRYAG 1 cut(s) 1237
SfuI TTCGAA 1 cut(s) 1045
SinI GGWCC 2 cut(s) 188, 308
SmiMI CAYNNNNRTG 7 cut(s) 105, 210, 270, 588, 924, 1443, 1758
SmlI CTYRAG 1 cut(s) 886
SmoI CTYRAG 1 cut(s) 886
SphI GCATGC 2 cut(s) 404, 633
SsiI CCGC 2 cut(s) 482, 1251
SspI AATATT 1 cut(s) 863
SspMI CTAG 6 cut(s) 420, 761, 836, 909, 1098, 1692
StyD4I CCNGG 5 cut(s) 184, 340, 613, 811, 1597
StyI CCWWGG 4 cut(s) 241, 296, 1396, 1506
TaaI ACNGT 5 cut(s) 220, 327, 430, 751, 1418
TaiI ACGT 1 cut(s) 234
TaqI TCGA 5 cut(s) 1045, 1086, 1118, 1200, 1626
TatI WGTACW 2 cut(s) 1002, 1126
TfiI GAWTC 4 cut(s) 1262, 1310, 1376, 1581
Tru1I TTAA 3 cut(s) 602, 777, 1637
Tru9I TTAA 3 cut(s) 602, 777, 1637
TscAI CASTG 5 cut(s) 272, 332, 754, 796, 1660
TseFI GTSAC 2 cut(s) 904, 1136
TseI GCWGC 2 cut(s) 1016, 1019
Tsp45I GTSAC 2 cut(s) 904, 1136
TspDTI ATGAA 9 cut(s) 17, 375, 422, 507, 722, 1136, 1275, 1389, 1664
TspGWI ACGGA 1 cut(s) 714
TspRI CASTG 5 cut(s) 272, 332, 754, 796, 1660
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 188, 308
XagI CCTNNNNNAGG 1 cut(s) 1237
XapI RAATTY 5 cut(s) 1028, 1267, 1483, 1741, 1766
XceI RCATGY 4 cut(s) 21, 404, 633, 1720
XcmI CCANNNNNNNNNTGG 2 cut(s) 294, 1222
XmiI GTMKAC 1 cut(s) 1200
XspI CTAG 6 cut(s) 420, 761, 836, 909, 1098, 1692
Zsp2I ATGCAT 3 cut(s) 256, 1440, 1446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.