Rh6BG279500

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000320
Physical Location & Seq
Reverse (-)
50127347 .. 50131747
4401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG279500.1

Sequence Viewer

Length: 1740 bp
ATGAAATCCCGAAAGAAAAGGACGGCTATTCTTTTAAGGGAGAAAAACTTCACCAGATTATGCGAAACAAAGAGCATGTTTGTTGTAAACGACATTTTCCCAGGCCCGGAGATACGAGTTCATAAGGGGGATATGGTCTATGTAAATGTTTATAATCAAGGATATTATGGTCTCACTATTCACTGGCATGGAATAATGCAACTAAGAAATCCATGGTCAGATGGTCCTGAGTATATCACACAGTGTCCAATCCAACCAGGGACTAATTTCACATACGAGGTCTTGTTATCTACGGAAGAAGGAACCGTATGGTGGCATGCTCATAGTGACTGGACACGAGCTAGCGTTCATGGGGCCATTGTCATATTGCCTACTGTTGGAAGCACATATCCATTTCCTCAACCCGATGAAGATGAGGTCATTATATTATCATCCTGGTACTTCGGAGATTTGAAAGCAAGGGTTGATGAGGCTATGAAAGAAGCTACATCTTTACCCCGTTCTGATGCATACACCATAAATGGGCAGCCGGGGGATCTTTTTCCATGCTCCAAGGGGACAGCATACAATCGAAAAGTGGATTATGCCAAGACCTATCTTCTTCGTATAGTCAATGCAAACATAGATTCATCCCTTTTCTTTGCAGTTGCTCAACACAACCTCACTGTTGTCGGACTAGACGGAGCCTATATCAAACCCATATACACAACCTACATAGTCATAAGCCCTGGACAAACTATGGATGTTTTGCTCAAAGCAGATCAGGTTCTCGGGCGCTATTACATGGCTGGTAGACATTTCTCTAGTGATAATGCCAAAGTTTCTCAATTTGGCCATGATGTTACTGCAATCTTGGAATACAATGGCAACTACACTTATCCAACATCACCTCTCTTTCCCAAAACCCTTCCTATGTACTCAGACTTTGCAGCAGCATTAAACTTCACTTGCCAAATTAAAAGCCTAGCTTCCCCAGAATATCCAATAAATGTCCCACCAGACAATGACATTACTACCAGAATGTTTATAACAGCTTCCATGAATTCACTTTACTGTGAAGAATCAGGCTTCTTGAGCTGCACAGAGATACCAATCGCTACGAGCGTAAATAACATTAGCTGGGTGAACCCGAGGAATACAGATCTCTTGCAAGCTTATCAGGCACGGAACCAGGAAATAAATTTGAGGAACATAAGTGGGGTTTACTCAACTGATTTTCCAGACCAACCGCCTACTTATTATAACTTTACAGACGAAACTTACTCGAACGATACCGTGTTAACAGTACAAGGAACAAAGGTGAAGTTGTTAAGTTATAATGAGTCAGTTGAGATTGTGTTCCAAGGGACTGATGTGCAAGGAGGCTCTGTGAATCATCCACTGCATATGCATGGATATAAGTTTTATGTCGTTGGATATGGTTTCGGAAATTATGACAATGAGACCGACCCAAAAGGGTTTAATCTTGTTGATCCTCCTCATGTCACTACATTTGGAATTCCCAAAAATGGATGGTTGGCGATCAGATTCATAGCGAATAATCCTGGTGTTTGGTTTTGGCATTGTCATATGGAGAGACACCTGACTTTGGGTATGGAAGCTGCATTCATAGTGAAGAATGGGGGCACCGCTGAAACTAGCATACTCGAACCCCCAGCTTACATGCCTTCCTGTAATGTTCCATTGGCTTCTCGTTTCAAAAATTCTGATGTGTTTGTTGAAAAGAAAATAGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

579

Amino Acids

65.24

Weight (kDa)

5.74

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 14 - 124 1e-36 Multicopper oxidase
Cu-oxidase PF00394 138 - 290 3.1e-32 Multicopper oxidase
Cu-oxidase_2 PF07731 405 - 540 7.1e-38 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 153, 1028, 1242, 1317
AccB1I GGYRCC 1 cut(s) 1625
AccI GTMKAC 1 cut(s) 793
AciI CCGC 2 cut(s) 1229, 1629
AclWI GGATC 2 cut(s) 543, 1466
AcoI YGGCCR 1 cut(s) 832
AcsI RAATTY 4 cut(s) 1042, 1180, 1497, 1702
AdeI CACNNNGTG 1 cut(s) 243
AfaI GTAC 3 cut(s) 440, 917, 1287
AfiI CCNNNNNNNGG 6 cut(s) 106, 312, 377, 522, 1508, 1588
AgsI TTSAA 3 cut(s) 454, 1699, 1721
AjnI CCWGG 6 cut(s) 100, 256, 434, 727, 1170, 1543
AluBI AGCT 9 cut(s) 341, 485, 968, 1034, 1077, 1119, 1154, 1601, 1658
AluI AGCT 9 cut(s) 341, 485, 968, 1034, 1077, 1119, 1154, 1601, 1658
Alw26I GTCTC 3 cut(s) 176, 1436, 1570
AlwI GGATC 2 cut(s) 543, 1466
Ama87I CYCGRG 2 cut(s) 770, 1129
AoxI GGCC 3 cut(s) 103, 354, 832
ApeKI GCWGC 5 cut(s) 526, 929, 932, 1077, 1601
ApoI RAATTY 4 cut(s) 1042, 1180, 1497, 1702
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 777
AspS9I GGNCC 3 cut(s) 104, 224, 354
AsuC2I CCSGG 2 cut(s) 107, 531
AsuHPI GGTGA 4 cut(s) 43, 879, 1135, 1312
AsuNHI GCTAGC 1 cut(s) 341
AvaI CYCGRG 2 cut(s) 770, 1129
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 1628
BalI TGGCCA 1 cut(s) 834
BanI GGYRCC 1 cut(s) 1625
BauI CACGAG 1 cut(s) 336
BbvI GCAGC 5 cut(s) 538, 941, 944, 1064, 1588
BccI CCATC 2 cut(s) 215, 1506
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 6 cut(s) 102, 258, 436, 729, 1172, 1545
BcnI CCSGG 2 cut(s) 107, 531
BcoDI GTCTC 3 cut(s) 176, 1436, 1570
BfaI CTAG 5 cut(s) 342, 677, 804, 965, 1638
BfoI RGCGCY 1 cut(s) 778
BglII AGATCT 1 cut(s) 1141
BisI GCNGC 5 cut(s) 527, 930, 933, 1078, 1602
BlsI GCNGC 5 cut(s) 528, 931, 934, 1079, 1603
Bme1390I CCNGG 8 cut(s) 102, 107, 258, 436, 531, 729, 1172, 1545
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 2 cut(s) 770, 1129
BmgT120I GGNCC 3 cut(s) 104, 224, 354
BmiI GGNNCC 5 cut(s) 304, 355, 685, 1169, 1627
BmrFI CCNGG 8 cut(s) 102, 107, 258, 436, 531, 729, 1172, 1545
BmsI GCATC 1 cut(s) 496
BmtI GCTAGC 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 1093
BpuMI CCSGG 2 cut(s) 107, 531
BsaBI GATNNNNATC 1 cut(s) 1091
BsaI GGTCTC 2 cut(s) 176, 1436
BsaJI CCNNGG 8 cut(s) 100, 212, 257, 530, 552, 727, 1130, 1342
BsaXI ACNNNNNCTCC 2 cut(s) 1353, 1383
Bsc4I CCNNNNNNNGG 6 cut(s) 106, 312, 377, 522, 1508, 1588
Bse1I ACTGG 2 cut(s) 188, 335
Bse8I GATNNNNATC 1 cut(s) 1091
BseBI CCWGG 6 cut(s) 102, 258, 436, 729, 1172, 1545
BseDI CCNNGG 8 cut(s) 100, 212, 257, 530, 552, 727, 1130, 1342
BseGI GGATG 5 cut(s) 431, 629, 748, 1375, 1517
BseJI GATNNNNATC 1 cut(s) 1091
BseLI CCNNNNNNNGG 6 cut(s) 106, 312, 377, 522, 1508, 1588
BseMII CTCAG 2 cut(s) 219, 933
BseNI ACTGG 2 cut(s) 188, 335
BseRI GAGGAG 1 cut(s) 1467
BseSI GKGCMC 1 cut(s) 1628
BseXI GCAGC 5 cut(s) 538, 941, 944, 1064, 1588
BseYI CCCAGC 2 cut(s) 1119, 1654
BsgI GTGCAG 1 cut(s) 1063
BshFI GGCC 3 cut(s) 105, 356, 834
BshNI GGYRCC 1 cut(s) 1625
BsiHKCI CYCGRG 2 cut(s) 770, 1129
BsiSI CCGG 2 cut(s) 107, 530
BslFI GGGAC 4 cut(s) 274, 571, 977, 1360
BslI CCNNNNNNNGG 6 cut(s) 106, 312, 377, 522, 1508, 1588
BsmAI GTCTC 3 cut(s) 176, 1436, 1570
BsmFI GGGAC 4 cut(s) 274, 571, 977, 1360
BsmI GAATGC 1 cut(s) 1604
BsnI GGCC 3 cut(s) 105, 356, 834
Bso31I GGTCTC 2 cut(s) 176, 1436
BsoBI CYCGRG 2 cut(s) 770, 1129
Bsp1286I GDGCHC 1 cut(s) 1628
Bsp143I GATC 6 cut(s) 535, 760, 1141, 1471, 1521, 1732
Bsp19I CCATGG 1 cut(s) 212
BspACI CCGC 2 cut(s) 1229, 1629
BspANI GGCC 3 cut(s) 105, 356, 834
BspCNI CTCAG 2 cut(s) 220, 932
BspLI GGNNCC 5 cut(s) 304, 355, 685, 1169, 1627
BspOI GCTAGC 1 cut(s) 345
BspPI GGATC 2 cut(s) 543, 1466
BspT107I GGYRCC 1 cut(s) 1625
BspTNI GGTCTC 2 cut(s) 176, 1436
BsrI ACTGG 2 cut(s) 188, 335
BssECI CCNNGG 8 cut(s) 100, 212, 257, 530, 552, 727, 1130, 1342
BssMI GATC 6 cut(s) 535, 760, 1141, 1471, 1521, 1732
BssSI CACGAG 1 cut(s) 336
BssT1I CCWWGG 3 cut(s) 212, 552, 1342
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 6 cut(s) 102, 258, 436, 729, 1172, 1545
Bst4CI ACNGT 7 cut(s) 243, 307, 376, 667, 1055, 1276, 1285
BstC8I GCNNGC 3 cut(s) 318, 343, 1152
BstDEI CTNAG 3 cut(s) 203, 228, 919
BstDSI CCRYGG 1 cut(s) 212
BstF5I GGATG 5 cut(s) 431, 629, 748, 1375, 1517
BstH2I RGCGCY 1 cut(s) 778
BstHHI GCGC 1 cut(s) 777
BstKTI GATC 6 cut(s) 538, 763, 1144, 1474, 1524, 1735
BstMAI GTCTC 3 cut(s) 176, 1436, 1570
BstMBI GATC 6 cut(s) 535, 760, 1141, 1471, 1521, 1732
BstMWI GCNNNNNNNGC 2 cut(s) 1074, 1160
BstNI CCWGG 6 cut(s) 102, 258, 436, 729, 1172, 1545
BstNSI RCATGY 3 cut(s) 79, 320, 1666
BstSCI CCNGG 8 cut(s) 100, 105, 256, 434, 529, 727, 1170, 1543
BstSLI GKGCMC 1 cut(s) 1628
BstV1I GCAGC 5 cut(s) 538, 941, 944, 1064, 1588
BstX2I RGATCY 2 cut(s) 535, 1141
BstYI RGATCY 2 cut(s) 535, 1141
BsuRI GGCC 3 cut(s) 105, 356, 834
BtgI CCRYGG 1 cut(s) 212
BtsCI GGATG 5 cut(s) 431, 629, 748, 1375, 1517
BtsI GCAGTG 1 cut(s) 1379
BtsIMutI CAGTG 4 cut(s) 181, 248, 663, 1379
Cac8I GCNNGC 3 cut(s) 318, 343, 1152
CfoI GCGC 1 cut(s) 777
Cfr13I GGNCC 3 cut(s) 104, 224, 354
Csp6I GTAC 3 cut(s) 439, 916, 1286
CviQI GTAC 3 cut(s) 439, 916, 1286
DdeI CTNAG 3 cut(s) 203, 228, 919
DpnI GATC 6 cut(s) 537, 762, 1143, 1473, 1523, 1734
DpnII GATC 6 cut(s) 535, 760, 1141, 1471, 1521, 1732
DraIII CACNNNGTG 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 832
Eco130I CCWWGG 3 cut(s) 212, 552, 1342
Eco31I GGTCTC 2 cut(s) 176, 1436
Eco47I GGWCC 1 cut(s) 224
Eco88I CYCGRG 2 cut(s) 770, 1129
EcoRI GAATTC 2 cut(s) 1042, 1497
EcoRII CCWGG 6 cut(s) 100, 256, 434, 727, 1170, 1543
EcoT14I CCWWGG 3 cut(s) 212, 552, 1342
EcoT22I ATGCAT 2 cut(s) 511, 1392
ErhI CCWWGG 3 cut(s) 212, 552, 1342
FalI AAGNNNNNCTT 2 cut(s) 952, 984
FaqI GGGAC 4 cut(s) 274, 571, 977, 1360
FauNDI CATATG 2 cut(s) 1386, 1569
FblI GTMKAC 1 cut(s) 793
Fnu4HI GCNGC 5 cut(s) 527, 930, 933, 1078, 1602
FokI GGATG 5 cut(s) 418, 616, 755, 1362, 1524
Fsp4HI GCNGC 5 cut(s) 527, 930, 933, 1078, 1602
FspBI CTAG 5 cut(s) 342, 677, 804, 965, 1638
GlaI GCGC 1 cut(s) 776
GluI GCNGC 5 cut(s) 527, 930, 933, 1078, 1602
GsaI CCCAGC 2 cut(s) 1123, 1658
HaeII RGCGCY 1 cut(s) 778
HaeIII GGCC 3 cut(s) 105, 356, 834
HapII CCGG 2 cut(s) 107, 530
HhaI GCGC 1 cut(s) 777
Hin6I GCGC 1 cut(s) 775
HinP1I GCGC 1 cut(s) 775
HincII GTYRAC 1 cut(s) 1281
HindII GTYRAC 1 cut(s) 1281
HindIII AAGCTT 1 cut(s) 1152
HinfI GANTC 5 cut(s) 626, 1061, 1322, 1372, 1527
HpaI GTTAAC 1 cut(s) 1281
HpaII CCGG 2 cut(s) 107, 530
HphI GGTGA 4 cut(s) 43, 879, 1135, 1312
Hpy166II GTNNAC 5 cut(s) 88, 794, 1126, 1204, 1281
Hpy188I TCNGA 8 cut(s) 220, 446, 505, 674, 922, 1427, 1526, 1708
Hpy188III TCNNGA 4 cut(s) 9, 227, 1072, 1220
Hpy8I GTNNAC 5 cut(s) 88, 794, 1126, 1204, 1281
HpyAV CCTTC 3 cut(s) 293, 917, 1677
HpyCH4III ACNGT 7 cut(s) 243, 307, 376, 667, 1055, 1276, 1285
HpyF10VI GCNNNNNNNGC 2 cut(s) 1074, 1160
HpyF3I CTNAG 3 cut(s) 203, 228, 919
HspAI GCGC 1 cut(s) 775
KspAI GTTAAC 1 cut(s) 1281
Kzo9I GATC 6 cut(s) 535, 760, 1141, 1471, 1521, 1732
LmnI GCTCC 2 cut(s) 554, 683
Lsp1109I GCAGC 5 cut(s) 538, 941, 944, 1064, 1588
LweI GCATC 1 cut(s) 496
MaeI CTAG 5 cut(s) 342, 677, 804, 965, 1638
MaeIII GTNAC 3 cut(s) 326, 841, 1483
MalI GATC 6 cut(s) 537, 762, 1143, 1473, 1523, 1734
MboI GATC 6 cut(s) 535, 760, 1141, 1471, 1521, 1732
MboII GAAGA 6 cut(s) 308, 422, 590, 593, 1070, 1627
MflI RGATCY 2 cut(s) 535, 1141
MhlI GDGCHC 1 cut(s) 1628
MlsI TGGCCA 1 cut(s) 834
MluCI AATT 8 cut(s) 265, 827, 954, 1042, 1180, 1429, 1497, 1702
MluNI TGGCCA 1 cut(s) 834
MlyI GAGTC 1 cut(s) 1331
MmeI TCCRAC 5 cut(s) 277, 358, 652, 905, 1393
Mox20I TGGCCA 1 cut(s) 834
Mph1103I ATGCAT 2 cut(s) 511, 1392
MroXI GAANNNNTTC 1 cut(s) 47
MscI TGGCCA 1 cut(s) 834
MseI TTAA 6 cut(s) 35, 938, 957, 1280, 1310, 1461
MslI CAYNNNNRTG 2 cut(s) 186, 1389
Msp20I TGGCCA 1 cut(s) 834
MspA1I CMGCKG 1 cut(s) 1631
MspI CCGG 2 cut(s) 107, 530
MspR9I CCNGG 8 cut(s) 102, 107, 258, 436, 531, 729, 1172, 1545
Mva1269I GAATGC 1 cut(s) 1604
MvaI CCWGG 6 cut(s) 102, 258, 436, 729, 1172, 1545
MwoI GCNNNNNNNGC 2 cut(s) 1074, 1160
NciI CCSGG 2 cut(s) 107, 531
NcoI CCATGG 1 cut(s) 212
NdeI CATATG 2 cut(s) 1386, 1569
NdeII GATC 6 cut(s) 535, 760, 1141, 1471, 1521, 1732
NheI GCTAGC 1 cut(s) 341
NlaIV GGNNCC 5 cut(s) 304, 355, 685, 1169, 1627
NmuCI GTSAC 2 cut(s) 326, 1483
NsiI ATGCAT 2 cut(s) 511, 1392
NspI RCATGY 3 cut(s) 79, 320, 1666
PaeI GCATGC 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 1101
PctI GAATGC 1 cut(s) 1604
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 4 cut(s) 626, 1061, 1372, 1527
PkrI GCNGC 5 cut(s) 528, 931, 934, 1079, 1603
PleI GAGTC 1 cut(s) 1330
PpsI GAGTC 1 cut(s) 1330
PsiI TTATAA 4 cut(s) 153, 1028, 1242, 1317
Psp6I CCWGG 6 cut(s) 100, 256, 434, 727, 1170, 1543
PspFI CCCAGC 2 cut(s) 1119, 1654
PspGI CCWGG 6 cut(s) 100, 256, 434, 727, 1170, 1543
PspN4I GGNNCC 5 cut(s) 304, 355, 685, 1169, 1627
PspPI GGNCC 3 cut(s) 104, 224, 354
PsuI RGATCY 2 cut(s) 535, 1141
RsaI GTAC 3 cut(s) 440, 917, 1287
RsaNI GTAC 3 cut(s) 439, 916, 1286
RseI CAYNNNNRTG 2 cut(s) 186, 1389
SaqAI TTAA 6 cut(s) 35, 938, 957, 1280, 1310, 1461
SatI GCNGC 5 cut(s) 527, 930, 933, 1078, 1602
Sau3AI GATC 6 cut(s) 535, 760, 1141, 1471, 1521, 1732
Sau96I GGNCC 3 cut(s) 104, 224, 354
SchI GAGTC 1 cut(s) 1331
ScrFI CCNGG 8 cut(s) 102, 107, 258, 436, 531, 729, 1172, 1545
SduI GDGCHC 1 cut(s) 1628
SfaNI GCATC 1 cut(s) 496
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 2 cut(s) 186, 1389
SmlI CTYRAG 1 cut(s) 1072
SmoI CTYRAG 1 cut(s) 1072
SphI GCATGC 1 cut(s) 320
Sse9I AATT 8 cut(s) 265, 827, 954, 1042, 1180, 1429, 1497, 1702
SsiI CCGC 2 cut(s) 1229, 1629
SspMI CTAG 5 cut(s) 342, 677, 804, 965, 1638
StyD4I CCNGG 8 cut(s) 100, 105, 256, 434, 529, 727, 1170, 1543
StyI CCWWGG 3 cut(s) 212, 552, 1342
TaaI ACNGT 7 cut(s) 243, 307, 376, 667, 1055, 1276, 1285
TaqI TCGA 3 cut(s) 571, 1265, 1647
TaqII GACCGA 1 cut(s) 1460
TasI AATT 8 cut(s) 265, 827, 954, 1042, 1180, 1429, 1497, 1702
TatI WGTACW 2 cut(s) 915, 1285
TfiI GAWTC 4 cut(s) 626, 1061, 1372, 1527
Tru1I TTAA 6 cut(s) 35, 938, 957, 1280, 1310, 1461
Tru9I TTAA 6 cut(s) 35, 938, 957, 1280, 1310, 1461
TscAI CASTG 4 cut(s) 188, 248, 670, 1386
TseFI GTSAC 2 cut(s) 326, 1483
TseI GCWGC 5 cut(s) 526, 929, 932, 1077, 1601
Tsp45I GTSAC 2 cut(s) 326, 1483
TspDTI ATGAA 9 cut(s) 17, 110, 338, 423, 491, 618, 1055, 1519, 1597
TspGWI ACGGA 3 cut(s) 308, 696, 1180
TspRI CASTG 4 cut(s) 188, 248, 670, 1386
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 4 cut(s) 1042, 1180, 1497, 1702
XceI RCATGY 3 cut(s) 79, 320, 1666
XmiI GTMKAC 1 cut(s) 793
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 5 cut(s) 342, 677, 804, 965, 1638
Zsp2I ATGCAT 2 cut(s) 511, 1392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.