Rroxscaffold_7G00195190

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000320
Physical Location & Seq
Forward (+)
37442963 .. 37451327
8365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195190.1

Sequence Viewer

Length: 1989 bp
ATGATAGTTTCCCAGGACCGGAGATACGTGTTCACAAAGGTGATACAGTTTATGTCAACGTGCATAACCAAGGAGATTATGCACTCACCATTCACTGGATTCCCGGCTACGCAGTGGCTCGGTAAATTGGATTTGGAAGGGTGCAGAGCCTCTCTTTCTTCTCCCTTATTTGGCAGCGATGGCGATTGGTGCAGACGGTGCCTTATGATGTCAGTTTTGAATTGGGCTCGTCTTTTGGGTGGACCGAAACCTCTGATGGCGGTTAGCTTGGTTGCGAAGGCGCGAGTCTTCTCACCTTCACTTTTGGTGTTTGGGTTGGGCGATGTGGGATGGGGACTCGATGATGGCAGTGCTGCTCAGGTCTATTATTCAGAGTCGATCAGGGGAACCCGAAACTCCACCACCCTTGACCACCATCAGTCAACAAGCAACGCCAACCACACCCCCAGCGAGCATGGGATAAAGCAACCACGAAATCCATGGTCAGATGGTCCATCTTACATCACACAGTGTCCAATCCCACCTGGAACAAACTTCACCTATGAAGTATTATTGTCCATAGAAGAAGGAACTGTATGGTGGCATGCACATAGTGATTGGACTAGAGCTACTGTTCATGGTGCTTTTGTTATCTTGCCTGCTATGGGAACCACATTCCCATTTCCGCAACCTGATGAAGACGAAGTTCTTGTAATTGCATCTTGGTACACAGGAGATATAAAAGAACTCATTGATGAGTCTATACAAAATGGTACCGACTTGCCCCATTCAGATGCTTACACTTTAAATGGGCAGCCAGGAGATTATTGTGCATGCTCCTACGGAACAGCGTACCGTCGTATAGTGGATTACGGCAAGACATATCTTCTTCGTATAGTCAACGGAAACATGAATGCAGAACACTTCTTTGCCGTTGCAGAGCATAGTCTCACTGTGGTTGGACTAGATGGAGCCTACATAAAACCCATAAACACTGCCTACATAGTCATAAGTCCTGGACAAACGATGGATGTCTTGCTGGTAGCAAACCAGTCACTTGGCCAATATTATATGGCTATTAGACAATACTCAAGTGAGAACCCTTCAACCGTTAATTTTGACCATGCAAATGTTACTGCAATCCTTGAATACAGAGGCGACTATACATATGAGACATCTCCTGCATTTCCATCTACTCTTCCTATGTACTTGGACAAAGCAGCAGCACTCAACTTCACATACCAACTTAGAGGCTTGGCTACTCCAGAGTACCCTGTAAATGTTCCACTCGACATCACTACTAGAATGTATATTACAGTGTCGATGAATGTACTTCCTTGTGACCATACAGGCTGTGAAATACCTGAGACTATCGCTTCAAGCCTAAATAATGTTAGTTGGGTCGACACAAAACCAACTACAAATGTCTTGCAGGCCTACTACAGGAACATAAGCGGGGCTTATGAATCAAATTTCCCAGACCAGCCTCCTTTGTTTTATAATTTTACAGCAGATTCTATCCCCGACTATTATGATTACACAGCACAAGGGACAAAGGTGAAAGTGTTGAACTATAATGAATCGGTTGAAATTGTGTTCCAAGGGACTAATGTGTTGGACGGTTCTGTCAATCATCCAATGCATATGCATGGATATAGCTTTTATGTGGTTGGATATGGTTTTGGAAATTATGACAATGAGACTGATCCCAAGGGGTATAATTTGGTAGATCCTCCTGAAGTAGCAACCTTTGGAGTTCCCAAAAGAGGATGGTTAGCAATCAGATTCAAAGCAACTAATCCTGTCCATCATTTCTCTCATGTGCCACAACAACATGGGCCACCAGTCCATTCCCTCTCTCCTGGTGCCACAACTACAATATCGGCCACTAATTCATCATCTCTCTTCGGTGCCTTATCTCTAGTCATGGCCACCGGTTCATCCCCTCTCTCCTGGTGCCAAAATAACAATAATAGCCACCAGTCCATTCCATCTCTTACGGTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

662

Amino Acids

73.11

Weight (kDa)

5.42

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 150 - 213 7.7e-20 Multicopper oxidase
Cu-oxidase PF00394 227 - 379 4.2e-34 Multicopper oxidase
Cu-oxidase_2 PF07731 487 - 600 5e-25 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1479
AasI GACNNNNNNGTC 1 cut(s) 1604
Acc65I GGTACC 1 cut(s) 752
AccB1I GGYRCC 6 cut(s) 198, 752, 1844, 1889, 1935, 1981
AccB7I CCANNNNNTGG 1 cut(s) 95
AccI GTMKAC 1 cut(s) 1383
AccII CGCG 1 cut(s) 283
AciI CCGC 3 cut(s) 260, 665, 1434
AclWI GGATC 2 cut(s) 1679, 1703
AcoI YGGCCR 3 cut(s) 1039, 1863, 1908
AcsI RAATTY 1 cut(s) 1450
AcuI CTGAAG 1 cut(s) 1737
AdeI CACNNNGTG 2 cut(s) 510, 593
AfaI GTAC 6 cut(s) 707, 754, 833, 1187, 1250, 1311
AfiI CCNNNNNNNGG 6 cut(s) 18, 95, 170, 644, 1422, 1745
AflIII ACRYGT 1 cut(s) 27
AgeI ACCGGT 1 cut(s) 1913
AgsI TTSAA 7 cut(s) 220, 1086, 1127, 1359, 1549, 1568, 1768
AjnI CCWGG 6 cut(s) 12, 523, 796, 994, 1840, 1931
AleI CACNNNNGTG 1 cut(s) 38
AluBI AGCT 3 cut(s) 267, 608, 1638
AluI AGCT 3 cut(s) 267, 608, 1638
Alw26I GTCTC 4 cut(s) 932, 1145, 1340, 1673
AlwI GGATC 2 cut(s) 1679, 1703
AoxI GGCC 5 cut(s) 1039, 1413, 1817, 1863, 1908
ApeKI GCWGC 5 cut(s) 174, 353, 793, 1199, 1202
ApoI RAATTY 1 cut(s) 1450
AsiGI ACCGGT 1 cut(s) 1913
Asp718I GGTACC 1 cut(s) 752
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 4 cut(s) 16, 242, 491, 1817
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 5 cut(s) 52, 78, 285, 529, 1549
AvaII GGWCC 3 cut(s) 16, 242, 491
BalI TGGCCA 2 cut(s) 1041, 1910
BanI GGYRCC 6 cut(s) 198, 752, 1844, 1889, 1935, 1981
BanII GRGCYC 1 cut(s) 229
BbsI GAAGAC 2 cut(s) 280, 684
BbvI GCAGC 5 cut(s) 186, 340, 805, 1211, 1214
BceAI ACGGC 2 cut(s) 868, 896
BciT130I CCWGG 6 cut(s) 14, 525, 798, 996, 1842, 1933
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 4 cut(s) 932, 1145, 1340, 1673
BfaI CTAG 4 cut(s) 603, 944, 1281, 1901
BfmI CTRYAG 1 cut(s) 1420
BisI GCNGC 5 cut(s) 175, 354, 794, 1200, 1203
BlsI GCNGC 5 cut(s) 176, 355, 795, 1201, 1204
Bme1390I CCNGG 7 cut(s) 14, 104, 525, 798, 996, 1842, 1933
Bme18I GGWCC 3 cut(s) 16, 242, 491
BmgT120I GGNCC 4 cut(s) 16, 242, 491, 1817
BmiI GGNNCC 9 cut(s) 200, 388, 649, 754, 952, 1846, 1891, 1937, 1983
BmrFI CCNGG 7 cut(s) 14, 104, 525, 798, 996, 1842, 1933
BmsI GCATC 2 cut(s) 707, 763
BpiI GAAGAC 2 cut(s) 280, 684
BpmI CTGGAG 1 cut(s) 1227
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 1054
BpuMI CCSGG 1 cut(s) 104
BsaAI YACGTR 1 cut(s) 28
BsaJI CCNNGG 5 cut(s) 12, 69, 479, 1579, 1689
BsaWI WCCGGW 2 cut(s) 18, 1913
Bsc4I CCNNNNNNNGG 6 cut(s) 18, 95, 170, 644, 1422, 1745
Bse118I RCCGGY 1 cut(s) 1913
Bse1I ACTGG 4 cut(s) 100, 1030, 1823, 1960
BseBI CCWGG 6 cut(s) 14, 525, 798, 996, 1842, 1933
BseDI CCNNGG 5 cut(s) 12, 69, 479, 1579, 1689
BseGI GGATG 5 cut(s) 335, 1015, 1612, 1754, 1919
BseLI CCNNNNNNNGG 6 cut(s) 18, 95, 170, 644, 1422, 1745
BseMII CTCAG 2 cut(s) 371, 1335
BseNI ACTGG 4 cut(s) 100, 1030, 1823, 1960
BseXI GCAGC 5 cut(s) 186, 340, 805, 1211, 1214
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 2 cut(s) 163, 211
Bsh1236I CGCG 1 cut(s) 283
BshFI GGCC 5 cut(s) 1041, 1415, 1819, 1865, 1910
BshNI GGYRCC 6 cut(s) 198, 752, 1844, 1889, 1935, 1981
BshTI ACCGGT 1 cut(s) 1913
BsiSI CCGG 3 cut(s) 19, 104, 1914
BslFI GGGAC 3 cut(s) 348, 1543, 1597
BslI CCNNNNNNNGG 6 cut(s) 18, 95, 170, 644, 1422, 1745
BsmAI GTCTC 4 cut(s) 932, 1145, 1340, 1673
BsmFI GGGAC 3 cut(s) 348, 1543, 1597
BsmI GAATGC 1 cut(s) 898
BsnI GGCC 5 cut(s) 1041, 1415, 1819, 1865, 1910
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 3 cut(s) 378, 1684, 1708
Bsp19I CCATGG 1 cut(s) 479
BspACI CCGC 3 cut(s) 260, 665, 1434
BspANI GGCC 5 cut(s) 1041, 1415, 1819, 1865, 1910
BspCNI CTCAG 2 cut(s) 370, 1336
BspFNI CGCG 1 cut(s) 283
BspLI GGNNCC 9 cut(s) 200, 388, 649, 754, 952, 1846, 1891, 1937, 1983
BspPI GGATC 2 cut(s) 1679, 1703
BspT107I GGYRCC 6 cut(s) 198, 752, 1844, 1889, 1935, 1981
BsrFI RCCGGY 1 cut(s) 1913
BsrI ACTGG 4 cut(s) 100, 1030, 1823, 1960
BssAI RCCGGY 1 cut(s) 1913
BssECI CCNNGG 5 cut(s) 12, 69, 479, 1579, 1689
BssMI GATC 3 cut(s) 378, 1684, 1708
BssT1I CCWWGG 4 cut(s) 69, 479, 1579, 1689
Bst2UI CCWGG 6 cut(s) 14, 525, 798, 996, 1842, 1933
Bst6I CTCTTC 2 cut(s) 1182, 1889
BstAPI GCANNNNNTGC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 5 cut(s) 452, 585, 639, 814, 1413
BstDEI CTNAG 3 cut(s) 357, 1226, 1344
BstDSI CCRYGG 1 cut(s) 479
BstENI CCTNNNNNAGG 1 cut(s) 1420
BstF5I GGATG 5 cut(s) 335, 1015, 1612, 1754, 1919
BstFNI CGCG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 3 cut(s) 381, 1687, 1711
BstMAI GTCTC 4 cut(s) 932, 1145, 1340, 1673
BstMBI GATC 3 cut(s) 378, 1684, 1708
BstMWI GCNNNNNNNGC 3 cut(s) 180, 189, 198
BstNI CCWGG 6 cut(s) 14, 525, 798, 996, 1842, 1933
BstNSI RCATGY 2 cut(s) 587, 816
BstSCI CCNGG 7 cut(s) 12, 102, 523, 796, 994, 1840, 1931
BstSFI CTRYAG 1 cut(s) 1420
BstUI CGCG 1 cut(s) 283
BstV1I GCAGC 5 cut(s) 186, 340, 805, 1211, 1214
BstV2I GAAGAC 2 cut(s) 280, 684
BstX2I RGATCY 1 cut(s) 1708
BstXI CCANNNNNNTGG 1 cut(s) 1037
BstYI RGATCY 1 cut(s) 1708
BsuRI GGCC 5 cut(s) 1041, 1415, 1819, 1865, 1910
BtgI CCRYGG 1 cut(s) 479
BtgZI GCGATG 2 cut(s) 192, 336
BtsCI GGATG 5 cut(s) 335, 1015, 1612, 1754, 1919
BtsI GCAGTG 3 cut(s) 119, 355, 972
BtsIMutI CAGTG 7 cut(s) 93, 119, 355, 515, 930, 972, 1302
Cac8I GCNNGC 5 cut(s) 452, 585, 639, 814, 1413
CfoI GCGC 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 1913
Cfr13I GGNCC 4 cut(s) 16, 242, 491, 1817
Csp6I GTAC 6 cut(s) 706, 753, 832, 1186, 1249, 1310
CspAI ACCGGT 1 cut(s) 1913
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviQI GTAC 6 cut(s) 706, 753, 832, 1186, 1249, 1310
DdeI CTNAG 3 cut(s) 357, 1226, 1344
DpnI GATC 3 cut(s) 380, 1686, 1710
DpnII GATC 3 cut(s) 378, 1684, 1708
DraI TTTAAA 1 cut(s) 786
DraIII CACNNNGTG 2 cut(s) 510, 593
DrdI GACNNNNNNGTC 1 cut(s) 1604
DseDI GACNNNNNNGTC 1 cut(s) 1604
EaeI YGGCCR 3 cut(s) 1039, 1863, 1908
Eam1104I CTCTTC 2 cut(s) 1182, 1889
EarI CTCTTC 2 cut(s) 1182, 1889
Eco130I CCWWGG 4 cut(s) 69, 479, 1579, 1689
Eco147I AGGCCT 1 cut(s) 1415
Eco24I GRGCYC 1 cut(s) 229
Eco47I GGWCC 3 cut(s) 16, 242, 491
Eco57I CTGAAG 1 cut(s) 1737
EcoNI CCTNNNNNAGG 1 cut(s) 1420
EcoRII CCWGG 6 cut(s) 12, 523, 796, 994, 1840, 1931
EcoT14I CCWWGG 4 cut(s) 69, 479, 1579, 1689
EcoT22I ATGCAT 2 cut(s) 1623, 1629
EcoT38I GRGCYC 1 cut(s) 229
ErhI CCWWGG 4 cut(s) 69, 479, 1579, 1689
FalI AAGNNNNNCTT 2 cut(s) 1423, 1455
FaqI GGGAC 3 cut(s) 348, 1543, 1597
FauI CCCGC 1 cut(s) 1427
FauNDI CATATG 2 cut(s) 1147, 1623
FblI GTMKAC 1 cut(s) 1383
Fnu4HI GCNGC 5 cut(s) 175, 354, 794, 1200, 1203
FokI GGATG 5 cut(s) 342, 1022, 1599, 1761, 1906
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 5 cut(s) 175, 354, 794, 1200, 1203
FspBI CTAG 4 cut(s) 603, 944, 1281, 1901
GlaI GCGC 1 cut(s) 282
GluI GCNGC 5 cut(s) 175, 354, 794, 1200, 1203
GsaI CCCAGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 1227
HaeIII GGCC 5 cut(s) 1041, 1415, 1819, 1865, 1910
HapII CCGG 3 cut(s) 19, 104, 1914
HhaI GCGC 1 cut(s) 283
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 4 cut(s) 57, 423, 880, 1384
HindII GTYRAC 4 cut(s) 57, 423, 880, 1384
HinfI GANTC 9 cut(s) 99, 285, 336, 374, 737, 1445, 1493, 1559, 1764
HpaII CCGG 3 cut(s) 19, 104, 1914
HphI GGTGA 5 cut(s) 52, 78, 285, 529, 1549
Hpy166II GTNNAC 7 cut(s) 33, 57, 242, 423, 708, 880, 1384
Hpy188I TCNGA 5 cut(s) 255, 373, 487, 772, 1763
Hpy188III TCNNGA 2 cut(s) 1244, 1715
Hpy8I GTNNAC 7 cut(s) 33, 57, 242, 423, 708, 880, 1384
Hpy99I CGWCG 1 cut(s) 840
HpyAV CCTTC 5 cut(s) 131, 271, 306, 560, 1092
HpyCH4IV ACGT 2 cut(s) 27, 59
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 189, 198
HpyF3I CTNAG 3 cut(s) 357, 1226, 1344
HpySE526I ACGT 2 cut(s) 27, 59
HspAI GCGC 1 cut(s) 281
KpnI GGTACC 1 cut(s) 756
Kzo9I GATC 3 cut(s) 378, 1684, 1708
LmnI GCTCC 2 cut(s) 821, 950
Lsp1109I GCAGC 5 cut(s) 186, 340, 805, 1211, 1214
LweI GCATC 2 cut(s) 707, 763
MaeI CTAG 4 cut(s) 603, 944, 1281, 1901
MaeII ACGT 2 cut(s) 27, 59
MaeIII GTNAC 3 cut(s) 1032, 1111, 1319
MalI GATC 3 cut(s) 380, 1686, 1710
MboI GATC 3 cut(s) 378, 1684, 1708
MboII GAAGA 8 cut(s) 150, 280, 575, 689, 857, 860, 1169, 1876
MflI RGATCY 1 cut(s) 1708
MhlI GDGCHC 1 cut(s) 229
MlsI TGGCCA 2 cut(s) 1041, 1910
MluNI TGGCCA 2 cut(s) 1041, 1910
MlyI GAGTC 4 cut(s) 294, 330, 383, 746
MmeI TCCRAC 3 cut(s) 919, 1575, 1630
MnlI CCTC 9 cut(s) 160, 261, 1127, 1223, 1476, 1722, 1739, 1844, 1935
Mox20I TGGCCA 2 cut(s) 1041, 1910
Mph1103I ATGCAT 2 cut(s) 1623, 1629
MscI TGGCCA 2 cut(s) 1041, 1910
MseI TTAA 2 cut(s) 785, 1092
MslI CAYNNNNRTG 4 cut(s) 38, 771, 1107, 1626
Msp20I TGGCCA 2 cut(s) 1041, 1910
MspI CCGG 3 cut(s) 19, 104, 1914
MspR9I CCNGG 7 cut(s) 14, 104, 525, 798, 996, 1842, 1933
Mva1269I GAATGC 1 cut(s) 898
MvaI CCWGG 6 cut(s) 14, 525, 798, 996, 1842, 1933
MvnI CGCG 1 cut(s) 283
MwoI GCNNNNNNNGC 3 cut(s) 180, 189, 198
NciI CCSGG 1 cut(s) 104
NcoI CCATGG 1 cut(s) 479
NdeI CATATG 2 cut(s) 1147, 1623
NdeII GATC 3 cut(s) 378, 1684, 1708
NlaIV GGNNCC 9 cut(s) 200, 388, 649, 754, 952, 1846, 1891, 1937, 1983
NmuCI GTSAC 2 cut(s) 1032, 1319
NsiI ATGCAT 2 cut(s) 1623, 1629
NspI RCATGY 2 cut(s) 587, 816
OliI CACNNNNGTG 1 cut(s) 38
PaeI GCATGC 2 cut(s) 587, 816
PceI AGGCCT 1 cut(s) 1415
PctI GAATGC 1 cut(s) 898
PfeI GAWTC 5 cut(s) 99, 1445, 1493, 1559, 1764
PflMI CCANNNNNTGG 1 cut(s) 95
PfoI TCCNGGA 1 cut(s) 994
PinAI ACCGGT 1 cut(s) 1913
PkrI GCNGC 5 cut(s) 176, 355, 795, 1201, 1204
PleI GAGTC 4 cut(s) 293, 330, 382, 745
PpsI GAGTC 4 cut(s) 293, 330, 382, 745
Ppu21I YACGTR 1 cut(s) 28
PsiI TTATAA 1 cut(s) 1479
Psp6I CCWGG 6 cut(s) 12, 523, 796, 994, 1840, 1931
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 6 cut(s) 12, 523, 796, 994, 1840, 1931
PspN4I GGNNCC 9 cut(s) 200, 388, 649, 754, 952, 1846, 1891, 1937, 1983
PspPI GGNCC 4 cut(s) 16, 242, 491, 1817
PsuI RGATCY 1 cut(s) 1708
RsaI GTAC 6 cut(s) 707, 754, 833, 1187, 1250, 1311
RsaNI GTAC 6 cut(s) 706, 753, 832, 1186, 1249, 1310
RseI CAYNNNNRTG 4 cut(s) 38, 771, 1107, 1626
SalI GTCGAC 1 cut(s) 1382
SaqAI TTAA 2 cut(s) 785, 1092
SatI GCNGC 5 cut(s) 175, 354, 794, 1200, 1203
Sau3AI GATC 3 cut(s) 378, 1684, 1708
Sau96I GGNCC 4 cut(s) 16, 242, 491, 1817
SchI GAGTC 4 cut(s) 294, 330, 383, 746
ScrFI CCNGG 7 cut(s) 14, 104, 525, 798, 996, 1842, 1933
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 2 cut(s) 707, 763
SfcI CTRYAG 1 cut(s) 1420
SinI GGWCC 3 cut(s) 16, 242, 491
SmiMI CAYNNNNRTG 4 cut(s) 38, 771, 1107, 1626
SmlI CTYRAG 1 cut(s) 1069
SmoI CTYRAG 1 cut(s) 1069
SphI GCATGC 2 cut(s) 587, 816
SseBI AGGCCT 1 cut(s) 1415
SsiI CCGC 3 cut(s) 260, 665, 1434
SspI AATATT 1 cut(s) 1046
SspMI CTAG 4 cut(s) 603, 944, 1281, 1901
StuI AGGCCT 1 cut(s) 1415
StyD4I CCNGG 7 cut(s) 12, 102, 523, 796, 994, 1840, 1931
StyI CCWWGG 4 cut(s) 69, 479, 1579, 1689
TaiI ACGT 2 cut(s) 30, 62
TaqI TCGA 5 cut(s) 339, 377, 1269, 1301, 1383
TaqII GACCGA 1 cut(s) 259
TatI WGTACW 2 cut(s) 1185, 1309
TfiI GAWTC 5 cut(s) 99, 1445, 1493, 1559, 1764
Tru1I TTAA 2 cut(s) 785, 1092
Tru9I TTAA 2 cut(s) 785, 1092
TscAI CASTG 7 cut(s) 100, 119, 355, 515, 937, 979, 1302
TseFI GTSAC 2 cut(s) 1032, 1319
TseI GCWGC 5 cut(s) 174, 353, 793, 1199, 1202
Tsp45I GTSAC 2 cut(s) 1032, 1319
TspDTI ATGAA 9 cut(s) 558, 605, 690, 905, 1319, 1458, 1572, 1863, 1908
TspGWI ACGGA 2 cut(s) 837, 897
TspRI CASTG 7 cut(s) 100, 119, 355, 515, 937, 979, 1302
Van91I CCANNNNNTGG 1 cut(s) 95
VpaK11BI GGWCC 3 cut(s) 16, 242, 491
XagI CCTNNNNNAGG 1 cut(s) 1420
XapI RAATTY 1 cut(s) 1450
XceI RCATGY 2 cut(s) 587, 816
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XmiI GTMKAC 1 cut(s) 1383
XspI CTAG 4 cut(s) 603, 944, 1281, 1901
Zsp2I ATGCAT 2 cut(s) 1623, 1629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.