RLG00000011333

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000320
Physical Location & Seq
Reverse (-)
8655859 .. 8659604
3746 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011333

Sequence Viewer

Length: 915 bp
ATGCTTGTGGTCGCCGCCGTCTACCCTCTTATCCCCAACCACTTCCTTCTTGGCATCTCCACCCAACCCGAGGCCGTCGAAGAAGCCAGAGTCGACAAAGAGGCTGCGGAAATGAGCGGTGGAGTTTCGATCTCCCAGAGAGTCAGAGACACTAACGACCACGGAAATCACACCGCTTCCATTGCAGCCGGCTGTTACGTCTTTCCGGCATCTGCTCTCAGCAAAAGAATGAACTGGAAATCGCTCCTACCTTCCGCCGTTGATTTCGATGCCCGGCGAGGTTACGACGCCATGTCTCCTTCGAAAAATTGGACTGAGACCAAAGGACGGATGGCGGCGACGGCGGCCATTTTTGAGAGGAACATAAGCAAGCCGATTTACGAAACAGATTTTCCAGACGAGCCGCCTACTTATTATAACTTCACAGATGGAGGGACGACGCTTTCTACAGTGTTGACAGTCCAAGGGACAAAGGTTGAGGTGCTAGACTATAATGAAACTGTTGAGATTGTGTTCCAAGGGACTAATGTGATGGGAGGCGCCGTGAATCATCCAATGCATTTGCATGGACATAGTTTCTACGTGCTAGAATTTGGTTTCGGATCCTTTGACCCGTTGAAGGACCCTAAAGGCTATAATTTGGTCGATCCTCATCCTTATGTGGCTACATTCGTTACTCCAAAAAATGGATGGCTAACAATAAGATTTGTAGCTGACAATCCTGGCGTGTGGTTTTGGCATTGTCATGTAGAGAGACATATGACATGGGGCATGGAGGCCGCTTTTATAATCAAGGAAGGAGGCACAGCTGAGACTAGTATGCTACCCCCACCAGCTCAAATGCCTTCCTGTGATGTTCCATTGGATTCTGCTATCAAAAATTACGAGGCCTTGATTGAGAAGCAAGTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

305

Amino Acids

33.6

Weight (kDa)

5.27

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 130 - 266 1.6e-37 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 417, 788
AccB1I GGYRCC 1 cut(s) 539
AccB7I CCANNNNNTGG 1 cut(s) 686
AccBSI CCGCTC 1 cut(s) 117
AccI GTMKAC 2 cut(s) 21, 93
AciI CCGC 9 cut(s) 15, 107, 117, 174, 255, 335, 344, 404, 780
AclWI GGATC 3 cut(s) 597, 610, 641
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 1 cut(s) 590
AcyI GRCGYC 2 cut(s) 288, 540
AfiI CCNNNNNNNGG 4 cut(s) 70, 327, 619, 686
AgsI TTSAA 1 cut(s) 619
AhdI GACNNNNNGTC 1 cut(s) 292
AhlI ACTAGT 1 cut(s) 815
AjnI CCWGG 1 cut(s) 721
AluBI AGCT 3 cut(s) 713, 809, 836
AluI AGCT 3 cut(s) 713, 809, 836
Alw26I GTCTC 5 cut(s) 141, 300, 311, 748, 806
AlwI GGATC 3 cut(s) 597, 610, 641
Ama87I CYCGRG 1 cut(s) 68
AoxI GGCC 4 cut(s) 72, 345, 777, 888
ApeKI GCWGC 2 cut(s) 104, 185
ApoI RAATTY 1 cut(s) 590
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 622
AsuC2I CCSGG 1 cut(s) 274
AsuII TTCGAA 1 cut(s) 302
AvaI CYCGRG 1 cut(s) 68
AvaII GGWCC 1 cut(s) 622
BamHI GGATCC 1 cut(s) 602
BanI GGYRCC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 91, 197
BccI CCATC 4 cut(s) 325, 422, 526, 684
BceAI ACGGC 5 cut(s) 2, 59, 242, 357, 527
BciT130I CCWGG 1 cut(s) 723
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 5 cut(s) 141, 300, 311, 748, 806
BcuI ACTAGT 1 cut(s) 815
BfaI CTAG 3 cut(s) 485, 587, 816
BfmI CTRYAG 1 cut(s) 447
BfoI RGCGCY 1 cut(s) 543
BisI GCNGC 7 cut(s) 15, 105, 186, 336, 345, 404, 780
BlsI GCNGC 7 cut(s) 16, 106, 187, 337, 346, 405, 781
Bme1390I CCNGG 2 cut(s) 274, 723
Bme18I GGWCC 1 cut(s) 622
BmeRI GACNNNNNGTC 1 cut(s) 292
BmeT110I CYCGRG 1 cut(s) 68
BmgT120I GGNCC 1 cut(s) 622
BmiI GGNNCC 3 cut(s) 541, 604, 624
BmrFI CCNGG 2 cut(s) 274, 723
BmsI GCATC 3 cut(s) 63, 218, 259
Bpu14I TTCGAA 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 274
BsaAI YACGTR 1 cut(s) 583
BsaBI GATNNNNATC 1 cut(s) 651
BsaHI GRCGYC 2 cut(s) 288, 540
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 4 cut(s) 69, 160, 463, 517
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 327, 619, 686
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 1 cut(s) 723
BseDI CCNNGG 4 cut(s) 69, 160, 463, 517
BseGI GGATG 4 cut(s) 336, 550, 652, 695
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 4 cut(s) 70, 327, 619, 686
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 3 cut(s) 232, 306, 801
BseNI ACTGG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 91, 197
BshFI GGCC 4 cut(s) 74, 347, 779, 890
BshNI GGYRCC 1 cut(s) 539
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 3 cut(s) 189, 206, 274
BslFI GGGAC 3 cut(s) 448, 481, 535
BslI CCNNNNNNNGG 4 cut(s) 70, 327, 619, 686
BsmAI GTCTC 5 cut(s) 141, 300, 311, 748, 806
BsmFI GGGAC 3 cut(s) 448, 481, 535
BsnI GGCC 4 cut(s) 74, 347, 779, 890
Bso31I GGTCTC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 302
Bsp143I GATC 3 cut(s) 129, 602, 646
BspACI CCGC 9 cut(s) 15, 107, 117, 174, 255, 335, 344, 404, 780
BspANI GGCC 4 cut(s) 74, 347, 779, 890
BspCNI CTCAG 3 cut(s) 231, 307, 802
BspLI GGNNCC 3 cut(s) 541, 604, 624
BspPI GGATC 3 cut(s) 597, 610, 641
BspT104I TTCGAA 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 539
BspTNI GGTCTC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 4 cut(s) 69, 160, 463, 517
BssMI GATC 3 cut(s) 129, 602, 646
BssNI GRCGYC 2 cut(s) 288, 540
BssT1I CCWWGG 2 cut(s) 463, 517
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 3 cut(s) 451, 460, 502
BstACI GRCGYC 2 cut(s) 288, 540
BstBAI YACGTR 1 cut(s) 583
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 190, 371
BstDEI CTNAG 3 cut(s) 218, 315, 810
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 4 cut(s) 336, 550, 652, 695
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 3 cut(s) 132, 605, 649
BstMAI GTCTC 5 cut(s) 141, 300, 311, 748, 806
BstMBI GATC 3 cut(s) 129, 602, 646
BstMWI GCNNNNNNNGC 3 cut(s) 182, 341, 344
BstNI CCWGG 1 cut(s) 723
BstSCI CCNGG 2 cut(s) 272, 721
BstSFI CTRYAG 1 cut(s) 447
BstV1I GCAGC 2 cut(s) 91, 197
BstX2I RGATCY 1 cut(s) 602
BstYI RGATCY 1 cut(s) 602
BsuRI GGCC 4 cut(s) 74, 347, 779, 890
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 4 cut(s) 336, 550, 652, 695
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 2 cut(s) 190, 371
CfoI GCGC 1 cut(s) 542
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 622
CseI GACGC 2 cut(s) 296, 448
CviAII CATG 5 cut(s) 292, 566, 746, 765, 772
DdeI CTNAG 3 cut(s) 218, 315, 810
DinI GGCGCC 1 cut(s) 541
DpnI GATC 3 cut(s) 131, 604, 648
DpnII GATC 3 cut(s) 129, 602, 646
DriI GACNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 345
Eam1105I GACNNNNNGTC 1 cut(s) 292
EciI GGCGGA 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 463, 517
Eco147I AGGCCT 1 cut(s) 890
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 622
Eco88I CYCGRG 1 cut(s) 68
EcoO109I RGGNCCY 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 721
EcoT14I CCWWGG 2 cut(s) 463, 517
EcoT22I ATGCAT 1 cut(s) 561
EgeI GGCGCC 1 cut(s) 541
EheI GGCGCC 1 cut(s) 541
ErhI CCWWGG 2 cut(s) 463, 517
FaeI CATG 5 cut(s) 295, 569, 749, 768, 775
FaqI GGGAC 3 cut(s) 448, 481, 535
FatI CATG 5 cut(s) 291, 565, 745, 764, 771
FauNDI CATATG 1 cut(s) 759
FblI GTMKAC 2 cut(s) 21, 93
Fnu4HI GCNGC 7 cut(s) 15, 105, 186, 336, 345, 404, 780
FokI GGATG 4 cut(s) 343, 537, 639, 702
Fsp4HI GCNGC 7 cut(s) 15, 105, 186, 336, 345, 404, 780
FspBI CTAG 3 cut(s) 485, 587, 816
GlaI GCGC 1 cut(s) 541
GluI GCNGC 7 cut(s) 15, 105, 186, 336, 345, 404, 780
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 4 cut(s) 74, 347, 779, 890
HapII CCGG 3 cut(s) 189, 206, 274
HgaI GACGC 2 cut(s) 296, 448
HhaI GCGC 1 cut(s) 542
Hin1I GRCGYC 2 cut(s) 288, 540
Hin1II CATG 5 cut(s) 295, 569, 749, 768, 775
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 2 cut(s) 94, 456
HindII GTYRAC 2 cut(s) 94, 456
HinfI GANTC 4 cut(s) 90, 141, 547, 866
HpaII CCGG 3 cut(s) 189, 206, 274
Hpy166II GTNNAC 3 cut(s) 22, 94, 456
Hpy188I TCNGA 2 cut(s) 146, 602
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 3 cut(s) 22, 94, 456
Hpy99I CGWCG 4 cut(s) 80, 290, 343, 442
HpyAV CCTTC 6 cut(s) 56, 261, 309, 613, 791, 855
HpyCH4III ACNGT 3 cut(s) 451, 460, 502
HpyCH4IV ACGT 2 cut(s) 198, 582
HpyCH4V TGCA 3 cut(s) 185, 559, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 341, 344
HpyF3I CTNAG 3 cut(s) 218, 315, 810
HpySE526I ACGT 2 cut(s) 198, 582
Hsp92I GRCGYC 2 cut(s) 288, 540
Hsp92II CATG 5 cut(s) 295, 569, 749, 768, 775
HspAI GCGC 1 cut(s) 540
KasI GGCGCC 1 cut(s) 539
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 129, 602, 646
LmnI GCTCC 1 cut(s) 249
Lsp1109I GCAGC 2 cut(s) 91, 197
LweI GCATC 3 cut(s) 63, 218, 259
MaeI CTAG 3 cut(s) 485, 587, 816
MaeII ACGT 2 cut(s) 198, 582
MaeIII GTNAC 3 cut(s) 194, 281, 673
MalI GATC 3 cut(s) 131, 604, 648
MbiI CCGCTC 1 cut(s) 117
MboI GATC 3 cut(s) 129, 602, 646
MboII GAAGA 1 cut(s) 92
MflI RGATCY 1 cut(s) 602
MluCI AATT 4 cut(s) 307, 590, 637, 880
Mly113I GGCGCC 1 cut(s) 540
MlyI GAGTC 2 cut(s) 99, 150
Mph1103I ATGCAT 1 cut(s) 561
MroNI GCCGGC 1 cut(s) 188
MslI CAYNNNNRTG 3 cut(s) 564, 657, 744
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 3 cut(s) 189, 206, 274
MspR9I CCNGG 2 cut(s) 274, 723
MvaI CCWGG 1 cut(s) 723
MwoI GCNNNNNNNGC 3 cut(s) 182, 341, 344
NaeI GCCGGC 1 cut(s) 190
NarI GGCGCC 1 cut(s) 540
NciI CCSGG 1 cut(s) 274
NdeI CATATG 1 cut(s) 759
NdeII GATC 3 cut(s) 129, 602, 646
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 5 cut(s) 295, 569, 749, 768, 775
NlaIV GGNNCC 3 cut(s) 541, 604, 624
NsiI ATGCAT 1 cut(s) 561
NspV TTCGAA 1 cut(s) 302
PceI AGGCCT 1 cut(s) 890
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 547, 866
PflMI CCANNNNNTGG 1 cut(s) 686
PkrI GCNGC 7 cut(s) 16, 106, 187, 337, 346, 405, 781
PleI GAGTC 2 cut(s) 98, 149
PluTI GGCGCC 1 cut(s) 543
PpsI GAGTC 2 cut(s) 98, 149
Ppu21I YACGTR 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 622
PsiI TTATAA 2 cut(s) 417, 788
Psp5II RGGWCCY 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 721
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 3 cut(s) 541, 604, 624
PspPI GGNCC 1 cut(s) 622
PspPPI RGGWCCY 1 cut(s) 622
PsuI RGATCY 1 cut(s) 602
PvuII CAGCTG 1 cut(s) 809
RseI CAYNNNNRTG 3 cut(s) 564, 657, 744
SalI GTCGAC 1 cut(s) 92
SatI GCNGC 7 cut(s) 15, 105, 186, 336, 345, 404, 780
Sau3AI GATC 3 cut(s) 129, 602, 646
Sau96I GGNCC 1 cut(s) 622
SchI GAGTC 2 cut(s) 99, 150
ScrFI CCNGG 2 cut(s) 274, 723
SetI ASST 9 cut(s) 201, 253, 283, 477, 483, 585, 715, 811, 838
SfaNI GCATC 3 cut(s) 63, 218, 259
SfcI CTRYAG 1 cut(s) 447
SfoI GGCGCC 1 cut(s) 541
SfuI TTCGAA 1 cut(s) 302
SinI GGWCC 1 cut(s) 622
SmiMI CAYNNNNRTG 3 cut(s) 564, 657, 744
SpeI ACTAGT 1 cut(s) 815
Sse9I AATT 4 cut(s) 307, 590, 637, 880
SseBI AGGCCT 1 cut(s) 890
SsiI CCGC 9 cut(s) 15, 107, 117, 174, 255, 335, 344, 404, 780
SspDI GGCGCC 1 cut(s) 539
SspMI CTAG 3 cut(s) 485, 587, 816
StuI AGGCCT 1 cut(s) 890
StyD4I CCNGG 2 cut(s) 272, 721
StyI CCWWGG 2 cut(s) 463, 517
TaaI ACNGT 3 cut(s) 451, 460, 502
TaiI ACGT 2 cut(s) 201, 585
TaqI TCGA 6 cut(s) 78, 93, 128, 267, 302, 645
TasI AATT 4 cut(s) 307, 590, 637, 880
TauI GCSGC 5 cut(s) 17, 338, 347, 406, 782
TfiI GAWTC 2 cut(s) 547, 866
TscAI CASTG 1 cut(s) 456
TseI GCWGC 2 cut(s) 104, 185
TspDTI ATGAA 2 cut(s) 245, 510
TspGWI ACGGA 2 cut(s) 177, 343
TspRI CASTG 1 cut(s) 456
Van91I CCANNNNNTGG 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 622
XapI RAATTY 1 cut(s) 590
XcmI CCANNNNNNNNNTGG 3 cut(s) 47, 328, 687
XmiI GTMKAC 2 cut(s) 21, 93
XspI CTAG 3 cut(s) 485, 587, 816
Zsp2I ATGCAT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.