FvH4_2g18990

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000320
Physical Location & Seq
Reverse (-)
16155342 .. 16159380
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18990.t1

Sequence Viewer

Length: 1557 bp
ATGGCTATTATGGTTGTTCATTTTCTTGTCCTGCAGTTCTTGATGATCTCTCTGGTTCGAGCCGAAGTAAGGGAGAAGAACTTCCCCAGGTTGTGCGAAACAAAGAGCGTGCTCCTTGTAAACGATATTTTCCCAGGCCCGGAGATACGAGTTCATAATGGGGATACAGTCTATGTAAATGTTCACAATCAAGGATATTATGGTCTCACTATTCACTGGCATGGAATAATGCAATTGAGAAATCCATGGTCAGATGGTCCGGAGTATATCACACAGTGTCCAATCCAACCAGGGACTAATTTCACATACGACGTCTTGCTATCTACAGAAGAAGGAACTGTGTGGTGGCACGCTCATAGTGACTGGACGCGAGCCAGTGTTCATGGTGCCATTGTCATCTTGCCTACTGTTGGAAGCACATACCCATTTCCTCAACCTGATAAAGATGAGGTCATTATATTATCATCCTGGTACTTGGGAGATTTGAAAGCAAGGGTTGATGAGGCTATGGAAGAAGGCACATCTTTACATCATTCTGATGCTTATACCATAAATGGCCAGCCAGGGGATCTTTGTCCCTGCTCCAAGTTTGCTCAACACAACCTCATTGTTGTTGGACTAGACGGATCCTATACCAAACCGATATACACACCCTACATACTCATAAGCCCTGGACAAACTATGGATGTTTTACTCAAAGCAGATCAGGCTCTTGGCTTCTATTACATGGCTGGTAGACATTTCTCTAGTGATAATGCCAAAGTTACTGAATTTGACCATGTCAATGTTACTGCAATATTAGAATACAATGGCAACTATACTTATTCAGCATCTCCTCTCTTTCCCCAAACCCTTCCTATAATGTTTATAACAGCTTCCATGAATTCACTCTACTGTGAAGATTCAGGCTTCTTGAGCTGCACAGAGATACCGGTCGCTTCAAGCGTAAATAACATTAGCTGGGTGAACCCGAGGAGTACAGATCTTTTGCAAGCTTACTACAGGAACATAAGTGGGATTTACTCGACAGATTTTCCAGACCAACCGCCTACTTATTATAACTTTACAGAAGCAACTTACTCGAAAGATACCATGCTAACAGTACAAGGGACGAAGGTGAAGGTGTTAAGTTATAATGAGTCAGTTGAGATTGTGTTCCAAGGGACTGATGTGCAAGGAGGCTCTGTGAATCATCCACTGCATATGCATGGATACAAGTTCTCTGTGGTTGGTTATGGTTTCGGAAACTATGACAATGAGACTGACCCGAAAGGGTTTAATTTGGTTGATCCTCCTCATGTTACTACGTTTGGAGTTCCCAAAAATGGATGGTTGGCGATCAGATTCGTCGCGAATAATCCTGGTGTTTGGTTTTGGCATTGTCATATGGAGAGACACTTGACTTTAGGTATGGAAGCTGCATTCATAGTGAAGAATGGAGACACCGCTGTAACTAGCATTCTCGAGCCCCCAGCTTACATGCCTTCCTGTGATGTTCCATTGGCTTCTCCTATCAAAGATTCTGATGAGTTTGTAGAAAAGAAAATAGACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

519

Amino Acids

58.02

Weight (kDa)

5.13

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 23 - 135 1.9e-37 Multicopper oxidase
Cu-oxidase PF00394 197 - 272 2.6e-14 Multicopper oxidase
Cu-oxidase_2 PF07731 344 - 480 6.9e-39 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 869, 1059, 1134
AatII GACGTC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 386
AccI GTMKAC 1 cut(s) 736
AccII CGCG 2 cut(s) 370, 1352
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 2 cut(s) 1046, 1446
AclWI GGATC 4 cut(s) 576, 621, 634, 1283
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 2 cut(s) 770, 883
AcyI GRCGYC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 276
AfaI GTAC 3 cut(s) 473, 979, 1104
AfiI CCNNNNNNNGG 5 cut(s) 69, 139, 410, 565, 1325
AgeI ACCGGT 1 cut(s) 931
AgsI TTSAA 2 cut(s) 487, 942
AjnI CCWGG 7 cut(s) 86, 133, 289, 467, 562, 670, 1360
AluBI AGCT 6 cut(s) 875, 918, 960, 995, 1418, 1475
AluI AGCT 6 cut(s) 875, 918, 960, 995, 1418, 1475
Alw21I GWGCWC 1 cut(s) 114
Alw26I GTCTC 4 cut(s) 209, 1253, 1387, 1434
AlwI GGATC 4 cut(s) 576, 621, 634, 1283
Ama87I CYCGRG 2 cut(s) 970, 1463
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 2 cut(s) 136, 556
ApeKI GCWGC 2 cut(s) 918, 1418
ApoI RAATTY 2 cut(s) 770, 883
AsiGI ACCGGT 1 cut(s) 931
Asp700I GAANNNNTTC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 137, 257
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 2 cut(s) 976, 1129
AvaI CYCGRG 2 cut(s) 970, 1463
AvaII GGWCC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 558
BamHI GGATCC 1 cut(s) 626
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 1 cut(s) 1470
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 905, 1405
BccI CCATC 2 cut(s) 248, 1323
BcgI CGANNNNNNTGC 2 cut(s) 1062, 1096
BciT130I CCWGG 7 cut(s) 88, 135, 291, 469, 564, 672, 1362
BciVI GTATCC 2 cut(s) 157, 1205
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 4 cut(s) 209, 1253, 1387, 1434
BfaI CTAG 3 cut(s) 620, 747, 1455
BfmI CTRYAG 3 cut(s) 32, 324, 1000
BfuI GTATCC 2 cut(s) 157, 1205
BglII AGATCT 1 cut(s) 982
BisI GCNGC 2 cut(s) 919, 1419
BlsI GCNGC 2 cut(s) 920, 1420
Bme1390I CCNGG 8 cut(s) 88, 135, 140, 291, 469, 564, 672, 1362
Bme18I GGWCC 1 cut(s) 257
BmeT110I CYCGRG 2 cut(s) 970, 1463
BmgT120I GGNCC 2 cut(s) 137, 257
BmiI GGNNCC 2 cut(s) 388, 628
BmrFI CCNGG 8 cut(s) 88, 135, 140, 291, 469, 564, 672, 1362
BmsI GCATC 2 cut(s) 529, 839
BpuEI CTTGAG 1 cut(s) 934
BpuMI CCSGG 1 cut(s) 140
BsaHI GRCGYC 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 209
BsaJI CCNNGG 8 cut(s) 86, 133, 245, 290, 563, 670, 971, 1159
BsaWI WCCGGW 2 cut(s) 259, 931
BsaXI ACNNNNNCTCC 2 cut(s) 1170, 1200
Bsc4I CCNNNNNNNGG 5 cut(s) 69, 139, 410, 565, 1325
Bse118I RCCGGY 1 cut(s) 931
Bse1I ACTGG 4 cut(s) 221, 368, 375, 1552
BseAI TCCGGA 1 cut(s) 259
BseBI CCWGG 7 cut(s) 88, 135, 291, 469, 564, 672, 1362
BseDI CCNNGG 8 cut(s) 86, 133, 245, 290, 563, 670, 971, 1159
BseGI GGATG 4 cut(s) 464, 691, 1192, 1334
BseLI CCNNNNNNNGG 5 cut(s) 69, 139, 410, 565, 1325
BseNI ACTGG 4 cut(s) 221, 368, 375, 1552
BseRI GAGGAG 3 cut(s) 825, 988, 1284
BseXI GCAGC 2 cut(s) 905, 1405
BseYI CCCAGC 2 cut(s) 960, 1471
BsgI GTGCAG 1 cut(s) 904
Bsh1236I CGCG 2 cut(s) 370, 1352
Bsh1285I CGRYCG 1 cut(s) 936
BshFI GGCC 2 cut(s) 138, 558
BshNI GGYRCC 1 cut(s) 386
BshTI ACCGGT 1 cut(s) 931
BsiEI CGRYCG 1 cut(s) 936
BsiHKAI GWGCWC 1 cut(s) 114
BsiHKCI CYCGRG 2 cut(s) 970, 1463
BsiSI CCGG 3 cut(s) 140, 260, 932
BslFI GGGAC 4 cut(s) 307, 561, 1123, 1177
BslI CCNNNNNNNGG 5 cut(s) 69, 139, 410, 565, 1325
BsmAI GTCTC 4 cut(s) 209, 1253, 1387, 1434
BsmFI GGGAC 4 cut(s) 307, 561, 1123, 1177
BsmI GAATGC 2 cut(s) 1421, 1458
BsnI GGCC 2 cut(s) 138, 558
Bso31I GGTCTC 1 cut(s) 209
BsoBI CYCGRG 2 cut(s) 970, 1463
Bsp1286I GDGCHC 2 cut(s) 114, 1470
Bsp13I TCCGGA 1 cut(s) 259
Bsp143I GATC 7 cut(s) 45, 568, 626, 703, 982, 1288, 1338
Bsp19I CCATGG 1 cut(s) 245
Bsp68I TCGCGA 1 cut(s) 1352
BspACI CCGC 2 cut(s) 1046, 1446
BspANI GGCC 2 cut(s) 138, 558
BspEI TCCGGA 1 cut(s) 259
BspFNI CGCG 2 cut(s) 370, 1352
BspLI GGNNCC 2 cut(s) 388, 628
BspMAI CTGCAG 1 cut(s) 36
BspPI GGATC 4 cut(s) 576, 621, 634, 1283
BspT107I GGYRCC 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 209
BsrFI RCCGGY 1 cut(s) 931
BsrI ACTGG 4 cut(s) 221, 368, 375, 1552
BssAI RCCGGY 1 cut(s) 931
BssECI CCNNGG 8 cut(s) 86, 133, 245, 290, 563, 670, 971, 1159
BssMI GATC 7 cut(s) 45, 568, 626, 703, 982, 1288, 1338
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 2 cut(s) 245, 1159
Bst2UI CCWGG 7 cut(s) 88, 135, 291, 469, 564, 672, 1362
Bst4CI ACNGT 6 cut(s) 169, 276, 340, 409, 896, 1102
BstACI GRCGYC 1 cut(s) 312
BstC8I GCNNGC 5 cut(s) 110, 351, 372, 560, 993
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 4 cut(s) 464, 691, 1192, 1334
BstFNI CGCG 2 cut(s) 370, 1352
BstKTI GATC 7 cut(s) 48, 571, 629, 706, 985, 1291, 1341
BstMAI GTCTC 4 cut(s) 209, 1253, 1387, 1434
BstMBI GATC 7 cut(s) 45, 568, 626, 703, 982, 1288, 1338
BstMCI CGRYCG 1 cut(s) 936
BstMWI GCNNNNNNNGC 2 cut(s) 707, 915
BstNI CCWGG 7 cut(s) 88, 135, 291, 469, 564, 672, 1362
BstNSI RCATGY 1 cut(s) 1483
BstSCI CCNGG 8 cut(s) 86, 133, 138, 289, 467, 562, 670, 1360
BstSFI CTRYAG 3 cut(s) 32, 324, 1000
BstUI CGCG 2 cut(s) 370, 1352
BstV1I GCAGC 2 cut(s) 905, 1405
BstX2I RGATCY 3 cut(s) 568, 626, 982
BstYI RGATCY 3 cut(s) 568, 626, 982
BsuI GTATCC 2 cut(s) 157, 1205
BsuRI GGCC 2 cut(s) 138, 558
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 4 cut(s) 464, 691, 1192, 1334
BtsI GCAGTG 1 cut(s) 1196
BtsIMutI CAGTG 4 cut(s) 214, 281, 382, 1196
BtuMI TCGCGA 1 cut(s) 1352
Cac8I GCNNGC 5 cut(s) 110, 351, 372, 560, 993
Cfr10I RCCGGY 1 cut(s) 931
Cfr13I GGNCC 2 cut(s) 137, 257
CseI GACGC 1 cut(s) 376
Csp6I GTAC 3 cut(s) 472, 978, 1103
CspAI ACCGGT 1 cut(s) 931
CviQI GTAC 3 cut(s) 472, 978, 1103
DpnI GATC 7 cut(s) 47, 570, 628, 705, 984, 1290, 1340
DpnII GATC 7 cut(s) 45, 568, 626, 703, 982, 1288, 1338
DraIII CACNNNGTG 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 556
Eco130I CCWWGG 2 cut(s) 245, 1159
Eco24I GRGCYC 1 cut(s) 1470
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 257
Eco88I CYCGRG 2 cut(s) 970, 1463
EcoRI GAATTC 1 cut(s) 883
EcoRII CCWGG 7 cut(s) 86, 133, 289, 467, 562, 670, 1360
EcoT14I CCWWGG 2 cut(s) 245, 1159
EcoT22I ATGCAT 1 cut(s) 1209
EcoT38I GRGCYC 1 cut(s) 1470
ErhI CCWWGG 2 cut(s) 245, 1159
FaqI GGGAC 4 cut(s) 307, 561, 1123, 1177
FauNDI CATATG 2 cut(s) 1203, 1386
FblI GTMKAC 1 cut(s) 736
Fnu4HI GCNGC 2 cut(s) 919, 1419
FokI GGATG 4 cut(s) 451, 698, 1179, 1341
FriOI GRGCYC 1 cut(s) 1470
Fsp4HI GCNGC 2 cut(s) 919, 1419
FspBI CTAG 3 cut(s) 620, 747, 1455
GluI GCNGC 2 cut(s) 919, 1419
GsaI CCCAGC 2 cut(s) 964, 1475
HaeIII GGCC 2 cut(s) 138, 558
HapII CCGG 3 cut(s) 140, 260, 932
HgaI GACGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 993
HinfI GANTC 5 cut(s) 902, 1139, 1189, 1344, 1520
HpaII CCGG 3 cut(s) 140, 260, 932
HphI GGTGA 2 cut(s) 976, 1129
Hpy166II GTNNAC 4 cut(s) 121, 184, 737, 967
Hpy188I TCNGA 5 cut(s) 253, 538, 1244, 1343, 1525
Hpy188III TCNNGA 6 cut(s) 40, 260, 913, 1037, 1351, 1463
Hpy8I GTNNAC 4 cut(s) 121, 184, 737, 967
Hpy99I CGWCG 2 cut(s) 314, 1352
HpyAV CCTTC 6 cut(s) 326, 509, 863, 1108, 1114, 1494
HpyCH4III ACNGT 6 cut(s) 169, 276, 340, 409, 896, 1102
HpyCH4IV ACGT 2 cut(s) 312, 1307
HpyCH4V TGCA 9 cut(s) 34, 232, 794, 921, 991, 1174, 1201, 1207, 1421
HpyF10VI GCNNNNNNNGC 2 cut(s) 707, 915
HpySE526I ACGT 2 cut(s) 312, 1307
Hsp92I GRCGYC 1 cut(s) 312
Kpn2I TCCGGA 1 cut(s) 259
Kzo9I GATC 7 cut(s) 45, 568, 626, 703, 982, 1288, 1338
LmnI GCTCC 2 cut(s) 117, 587
Lsp1109I GCAGC 2 cut(s) 905, 1405
LweI GCATC 2 cut(s) 529, 839
MaeI CTAG 3 cut(s) 620, 747, 1455
MaeII ACGT 2 cut(s) 312, 1307
MaeIII GTNAC 5 cut(s) 359, 763, 787, 1300, 1450
MalI GATC 7 cut(s) 47, 570, 628, 705, 984, 1290, 1340
MboI GATC 7 cut(s) 45, 568, 626, 703, 982, 1288, 1338
MboII GAAGA 5 cut(s) 88, 341, 524, 911, 1444
MfeI CAATTG 1 cut(s) 233
MflI RGATCY 3 cut(s) 568, 626, 982
MhlI GDGCHC 2 cut(s) 114, 1470
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 5 cut(s) 233, 298, 770, 883, 1279
MluNI TGGCCA 1 cut(s) 558
MlyI GAGTC 1 cut(s) 1148
MmeI TCCRAC 3 cut(s) 310, 391, 595
MnlI CCTC 9 cut(s) 441, 442, 496, 614, 846, 966, 1172, 1302, 1305
Mox20I TGGCCA 1 cut(s) 558
Mph1103I ATGCAT 1 cut(s) 1209
MroI TCCGGA 1 cut(s) 259
MroXI GAANNNNTTC 1 cut(s) 80
MscI TGGCCA 1 cut(s) 558
MseI TTAA 2 cut(s) 1127, 1278
MslI CAYNNNNRTG 4 cut(s) 219, 537, 783, 1206
Msp20I TGGCCA 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 1448
MspI CCGG 3 cut(s) 140, 260, 932
MspR9I CCNGG 8 cut(s) 88, 135, 140, 291, 469, 564, 672, 1362
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 2 cut(s) 1421, 1458
MvaI CCWGG 7 cut(s) 88, 135, 291, 469, 564, 672, 1362
MvnI CGCG 2 cut(s) 370, 1352
MwoI GCNNNNNNNGC 2 cut(s) 707, 915
NciI CCSGG 1 cut(s) 140
NcoI CCATGG 1 cut(s) 245
NdeI CATATG 2 cut(s) 1203, 1386
NdeII GATC 7 cut(s) 45, 568, 626, 703, 982, 1288, 1338
NlaIV GGNNCC 2 cut(s) 388, 628
NmuCI GTSAC 1 cut(s) 359
NruI TCGCGA 1 cut(s) 1352
NsiI ATGCAT 1 cut(s) 1209
NspI RCATGY 1 cut(s) 1483
PaeR7I CTCGAG 1 cut(s) 1463
PcsI WCGNNNNNNNCGW 1 cut(s) 942
PctI GAATGC 2 cut(s) 1421, 1458
PdmI GAANNNNTTC 1 cut(s) 80
PfeI GAWTC 4 cut(s) 902, 1189, 1344, 1520
PflFI GACNNNGTC 1 cut(s) 779
PinAI ACCGGT 1 cut(s) 931
PkrI GCNGC 2 cut(s) 920, 1420
PleI GAGTC 1 cut(s) 1147
PpsI GAGTC 1 cut(s) 1147
PsiI TTATAA 3 cut(s) 869, 1059, 1134
Psp6I CCWGG 7 cut(s) 86, 133, 289, 467, 562, 670, 1360
PspFI CCCAGC 2 cut(s) 960, 1471
PspGI CCWGG 7 cut(s) 86, 133, 289, 467, 562, 670, 1360
PspN4I GGNNCC 2 cut(s) 388, 628
PspPI GGNCC 2 cut(s) 137, 257
PstI CTGCAG 1 cut(s) 36
PsuI RGATCY 3 cut(s) 568, 626, 982
PsyI GACNNNGTC 1 cut(s) 779
RruI TCGCGA 1 cut(s) 1352
RsaI GTAC 3 cut(s) 473, 979, 1104
RsaNI GTAC 3 cut(s) 472, 978, 1103
RseI CAYNNNNRTG 4 cut(s) 219, 537, 783, 1206
SaqAI TTAA 2 cut(s) 1127, 1278
SatI GCNGC 2 cut(s) 919, 1419
Sau3AI GATC 7 cut(s) 45, 568, 626, 703, 982, 1288, 1338
Sau96I GGNCC 2 cut(s) 137, 257
SchI GAGTC 1 cut(s) 1148
ScrFI CCNGG 8 cut(s) 88, 135, 140, 291, 469, 564, 672, 1362
SduI GDGCHC 2 cut(s) 114, 1470
SfaNI GCATC 2 cut(s) 529, 839
SfcI CTRYAG 3 cut(s) 32, 324, 1000
Sfr274I CTCGAG 1 cut(s) 1463
SinI GGWCC 1 cut(s) 257
SlaI CTCGAG 1 cut(s) 1463
SmiMI CAYNNNNRTG 4 cut(s) 219, 537, 783, 1206
SmlI CTYRAG 2 cut(s) 913, 1463
SmoI CTYRAG 2 cut(s) 913, 1463
Sse9I AATT 5 cut(s) 233, 298, 770, 883, 1279
SsiI CCGC 2 cut(s) 1046, 1446
SspI AATATT 1 cut(s) 798
SspMI CTAG 3 cut(s) 620, 747, 1455
StyD4I CCNGG 8 cut(s) 86, 133, 138, 289, 467, 562, 670, 1360
StyI CCWWGG 2 cut(s) 245, 1159
TaaI ACNGT 6 cut(s) 169, 276, 340, 409, 896, 1102
TaiI ACGT 2 cut(s) 315, 1310
TaqI TCGA 4 cut(s) 58, 1025, 1082, 1464
TasI AATT 5 cut(s) 233, 298, 770, 883, 1279
TatI WGTACW 2 cut(s) 977, 1102
TfiI GAWTC 4 cut(s) 902, 1189, 1344, 1520
Tru1I TTAA 2 cut(s) 1127, 1278
Tru9I TTAA 2 cut(s) 1127, 1278
TscAI CASTG 4 cut(s) 221, 281, 382, 1203
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 2 cut(s) 918, 1418
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 5 cut(s) 8, 143, 371, 896, 1414
TspGWI ACGGA 1 cut(s) 639
TspRI CASTG 4 cut(s) 221, 281, 382, 1203
Tth111I GACNNNGTC 1 cut(s) 779
VpaK11BI GGWCC 1 cut(s) 257
XapI RAATTY 2 cut(s) 770, 883
XceI RCATGY 1 cut(s) 1483
XhoI CTCGAG 1 cut(s) 1463
XmiI GTMKAC 1 cut(s) 736
XmnI GAANNNNTTC 1 cut(s) 80
XspI CTAG 3 cut(s) 620, 747, 1455
ZraI GACGTC 1 cut(s) 313
Zsp2I ATGCAT 1 cut(s) 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.