Rorug06G0166400

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000320
Physical Location & Seq
Forward (+)
24032468 .. 24040310
7843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0166400.1

Sequence Viewer

Length: 699 bp
ATGATCAGAAAGAACTCCACCAACCTTGTTCTTTCTGTCATTTTCTTGTTCCTTTCTTCATGGATTTGCTTGGCCATTGCACAAAACAAGGCCAGTATCCCAGTTAATATTGTGGGTGTTGTTCTTAACCTTAATAGACAATATGGAAAGATTTGGTTGAGCTGCATCAAAATTGCCCTCTCAGATTTCTACGCTTCTCATGCTCACTACAAGACTAGGCTGGTCTTGAACATTCGGAACTCCAAGGAAAATGTTGTTGGCGTAGCTGCTGCAGCTTTAGATCTGATAAAGTATGCACAAGTGCAAGCAATCCTAGGGCCAGTAACATCAAGGCAGGCAAGCTTTGTTATCAACCTCGGTGACCAAGCTCAAGTGCCAATTATATCATTTTCTGCGACAAGCCCCTCTCTTACATCGTTGCGAAGCTCCTACTTTTTCCGATTTACTCAAAATGACTCATCCCAAGTGAAAGCCATTAGTGCAATAGTGAAAGCTTTTGGATGGAGTCATGTTGTGCCCATCTACATAGATACTGAGTTTGGTGAAGGAATCATACCATATTTAACTGATGCCTTAGACAAGGTTGATGTCCGTGTCCCCTATCGGAGTGTCATTTCCTCCTATCCACAGATGGTGAAATTATGGAAGAGCTTTACAAGTTACAAACAATGCAAACCAGAGTCTTCATTGTCCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

232

Amino Acids

25.75

Weight (kDa)

9.66

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peripla_BP_6 PF13458 48 - 199 4.7e-12 Periplasmic binding protein
ANF_receptor PF01094 53 - 213 5.5e-41 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 72
AgsI TTSAA 1 cut(s) 229
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 8 cut(s) 162, 266, 275, 342, 368, 426, 494, 651
AluI AGCT 8 cut(s) 162, 266, 275, 342, 368, 426, 494, 651
AoxI GGCC 3 cut(s) 72, 90, 317
ApeKI GCWGC 4 cut(s) 162, 266, 269, 272
AspA2I CCTAGG 1 cut(s) 313
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 371, 554, 646
AvrII CCTAGG 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 519
BalI TGGCCA 1 cut(s) 74
BarI GAAGNNNNNNTAC 2 cut(s) 537, 569
BbsI GAAGAC 1 cut(s) 675
BbvI GCAGC 4 cut(s) 149, 253, 256, 284
BccI CCATC 3 cut(s) 495, 527, 625
BciVI GTATCC 1 cut(s) 107
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 216, 314
BfmI CTRYAG 1 cut(s) 270
BfuI GTATCC 1 cut(s) 107
BglII AGATCT 1 cut(s) 280
BisI GCNGC 4 cut(s) 163, 267, 270, 273
BlnI CCTAGG 1 cut(s) 313
BlsI GCNGC 4 cut(s) 164, 268, 271, 274
BmgT120I GGNCC 1 cut(s) 317
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 174, 559
BmuI ACTGGG 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 243, 313, 355
Bse1I ACTGG 3 cut(s) 93, 101, 320
Bse3DI GCAATG 1 cut(s) 75
BseDI CCNNGG 3 cut(s) 243, 313, 355
BseGI GGATG 2 cut(s) 458, 506
BseMI GCAATG 1 cut(s) 75
BseMII CTCAG 2 cut(s) 195, 525
BseNI ACTGG 3 cut(s) 93, 101, 320
BseSI GKGCMC 1 cut(s) 519
BseXI GCAGC 4 cut(s) 149, 253, 256, 284
BshFI GGCC 3 cut(s) 74, 92, 319
BslFI GGGAC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 3 cut(s) 74, 92, 319
Bsp1286I GDGCHC 1 cut(s) 519
Bsp143I GATC 2 cut(s) 3, 280
BspANI GGCC 3 cut(s) 74, 92, 319
BspCNI CTCAG 2 cut(s) 194, 526
BspMAI CTGCAG 1 cut(s) 274
BspQI GCTCTTC 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 3 cut(s) 93, 101, 320
BssECI CCNNGG 3 cut(s) 243, 313, 355
BssMI GATC 2 cut(s) 3, 280
BssT1I CCWWGG 2 cut(s) 243, 313
Bst6I CTCTTC 1 cut(s) 641
BstC8I GCNNGC 3 cut(s) 306, 336, 340
BstDEI CTNAG 3 cut(s) 181, 534, 574
BstEII GGTNACC 1 cut(s) 359
BstF5I GGATG 2 cut(s) 458, 506
BstKTI GATC 2 cut(s) 6, 283
BstMBI GATC 2 cut(s) 3, 280
BstMWI GCNNNNNNNGC 3 cut(s) 200, 272, 479
BstPI GGTNACC 1 cut(s) 359
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 519
BstV1I GCAGC 4 cut(s) 149, 253, 256, 284
BstV2I GAAGAC 1 cut(s) 675
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuI GTATCC 1 cut(s) 107
BsuRI GGCC 3 cut(s) 74, 92, 319
BtsCI GGATG 2 cut(s) 458, 506
Cac8I GCNNGC 3 cut(s) 306, 336, 340
Cfr13I GGNCC 1 cut(s) 317
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 4 cut(s) 60, 200, 509, 696
DdeI CTNAG 3 cut(s) 181, 534, 574
DpnI GATC 2 cut(s) 5, 282
DpnII GATC 2 cut(s) 3, 280
EaeI YGGCCR 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Eco130I CCWWGG 2 cut(s) 243, 313
Eco91I GGTNACC 1 cut(s) 359
EcoO65I GGTNACC 1 cut(s) 359
EcoT14I CCWWGG 2 cut(s) 243, 313
ErhI CCWWGG 2 cut(s) 243, 313
FaeI CATG 4 cut(s) 63, 203, 512, 699
FaqI GGGAC 1 cut(s) 581
FatI CATG 4 cut(s) 59, 199, 508, 695
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 163, 267, 270, 273
FokI GGATG 2 cut(s) 445, 513
Fsp4HI GCNGC 4 cut(s) 163, 267, 270, 273
FspBI CTAG 2 cut(s) 216, 314
GluI GCNGC 4 cut(s) 163, 267, 270, 273
HaeIII GGCC 3 cut(s) 74, 92, 319
Hin1II CATG 4 cut(s) 63, 203, 512, 699
HindIII AAGCTT 2 cut(s) 340, 492
HinfI GANTC 4 cut(s) 455, 505, 549, 680
HphI GGTGA 3 cut(s) 371, 554, 646
Hpy166II GTNNAC 1 cut(s) 693
Hpy188I TCNGA 6 cut(s) 8, 184, 237, 285, 440, 606
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 1 cut(s) 693
HpyAV CCTTC 1 cut(s) 539
HpyCH4V TGCA 7 cut(s) 80, 165, 272, 296, 304, 482, 672
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 272, 479
HpyF3I CTNAG 3 cut(s) 181, 534, 574
Hsp92II CATG 4 cut(s) 63, 203, 512, 699
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 280
LguI GCTCTTC 1 cut(s) 641
LmnI GCTCC 1 cut(s) 431
LpnPI CCDG 6 cut(s) 106, 114, 206, 320, 333, 690
Lsp1109I GCAGC 4 cut(s) 149, 253, 256, 284
LweI GCATC 2 cut(s) 174, 559
MaeI CTAG 2 cut(s) 216, 314
MaeIII GTNAC 3 cut(s) 322, 359, 659
MalI GATC 2 cut(s) 5, 282
MboI GATC 2 cut(s) 3, 280
MboII GAAGA 3 cut(s) 48, 658, 675
MflI RGATCY 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 519
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 3 cut(s) 171, 378, 638
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 3 cut(s) 449, 514, 689
MnlI CCTC 4 cut(s) 188, 365, 415, 628
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
MseI TTAA 4 cut(s) 105, 126, 132, 563
Msp20I TGGCCA 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 200, 272, 479
NdeII GATC 2 cut(s) 3, 280
NlaIII CATG 4 cut(s) 63, 203, 512, 699
NmuCI GTSAC 1 cut(s) 359
PciSI GCTCTTC 1 cut(s) 641
PfeI GAWTC 1 cut(s) 549
PkrI GCNGC 4 cut(s) 164, 268, 271, 274
PleI GAGTC 3 cut(s) 449, 513, 688
PpsI GAGTC 3 cut(s) 449, 513, 688
PspEI GGTNACC 1 cut(s) 359
PspPI GGNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 274
PsuI RGATCY 1 cut(s) 280
SapI GCTCTTC 1 cut(s) 641
SaqAI TTAA 4 cut(s) 105, 126, 132, 563
SatI GCNGC 4 cut(s) 163, 267, 270, 273
Sau3AI GATC 2 cut(s) 3, 280
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 3 cut(s) 449, 514, 689
SduI GDGCHC 1 cut(s) 519
SfaNI GCATC 2 cut(s) 174, 559
SfcI CTRYAG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 3 cut(s) 171, 378, 638
SspI AATATT 1 cut(s) 109
SspMI CTAG 2 cut(s) 216, 314
StyI CCWWGG 2 cut(s) 243, 313
TasI AATT 3 cut(s) 171, 378, 638
TfiI GAWTC 1 cut(s) 549
Tru1I TTAA 4 cut(s) 105, 126, 132, 563
Tru9I TTAA 4 cut(s) 105, 126, 132, 563
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 4 cut(s) 162, 266, 269, 272
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 2 cut(s) 48, 675
TspGWI ACGGA 1 cut(s) 581
XmaJI CCTAGG 1 cut(s) 313
XspI CTAG 2 cut(s) 216, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.