FvH4_5g35760

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000320
Physical Location & Seq
Reverse (-)
26184996 .. 26188402
3407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35760.t8

Sequence Viewer

Length: 1293 bp
ATGAAACCCCAGAAGAATTGTTCGATATTATCGACAGAGATTCTGGGGTTTCTCTTTCTTCTTGTGCTGTTCATCTCCTCTGTCGCCGGCGAAGTGCATTTCTATGATTTCATTGTAAGGGAGAAAAACTTCACCAAACTGTGTTTAACAAAGAGCATCTTAGTCGTAAATGATGGTTTTCCAGGTCCAGAGATACGAGTTCACAAAGGGGATACTGTGTACGTTAATGTTCATAACCAAGGAGATTATGGTCTCACTATTCACTGGCATGGGATAAAACAACCAAGAAATCCGTGGTCAGATGGTCCAGAATACATCACGCAGTGCCCAATTCCTCCCGGAACAAATTTCACATACGAAGTAATATTATCCACTGAAGAAGGAACTTTATGGTGGCATGCTCATAGTGAATGGACAAGAGCCACGGTTCATGGTGCGATTGTCATCTTACCAAGTGCTGGAACCACATATCCATTTCCTCAACCGGATGAAGATGAGACCATTATAATCGCATCATGGTACGAGGGAGATATCAAAGAACTATATGATGAAGCTATGGATGATGGTAGCGACTTGCCCCATTCAGATGCTTATACTATAAATGGCGAACCAGGAGATTTTTGTGCATGCTCCAAAGAAACAACATATCGTCGAACAGTTGATTACGGCAAGACCTATCTTCTTCGTATAGTCAACGCAAACATGAACGCCGAACACTTCTTTGCAGTTGCAGAACACAATCTCACCGTTGTTGGCCTAGACGGATCATATGTAAAGCCCATAGAGACATCCTGCATAGTCATAAGTGCTGGACAAGTAATGGATGTTCTTCTCAAAGCAAACCAATCTCCAGGCCAATACTATATGGCTGCTAGACAATACTCGAGTGAGGATGCAGAAGTAACTGGCTTTGACCATGTAAATGTTACTGCAATCCTTGAATACAGAGGCAACTACACATATCAAACATCTCCTTCATTTCCAACTTCTCTTCCCATGTACTTGGAATCTCCAGCAGCAATAAGCTTCACCAACCGGATTAGAAGCTTGGCGACCCCCGAATACCCTATCGATGTCCCGTTAAATGTTACTACTAAAATGTTTATTACAGCTTCTATGAATGATCTTCCTTGTACACATCCAGGTTGCGAAACAACCGAACAAATCTCTTCGAGCTTGAATAATGTTAGCTGGATGAACCCAACATCAGATGTCCTCCAAGCCTACTACAGGCAGGAACATAAGTGGGGTTTACACAACAGATTTCCCAGACCAGCCTCCTACTTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

431

Amino Acids

48.36

Weight (kDa)

5.04

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_3 PF07732 13 - 126 1.6e-40 Multicopper oxidase
Cu-oxidase PF00394 139 - 292 9.7e-39 Multicopper oxidase
Cu-oxidase_2 PF07731 395 - 530 8.5e-38 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 506, 1291
AccB7I CCANNNNNTGG 1 cut(s) 458
AclWI GGATC 1 cut(s) 772
AcsI RAATTY 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 396
AdeI CACNNNGTG 1 cut(s) 324
AfaI GTAC 4 cut(s) 221, 521, 1001, 1135
AfiI CCNNNNNNNGG 2 cut(s) 458, 1230
AgsI TTSAA 2 cut(s) 941, 1180
AjnI CCWGG 4 cut(s) 181, 610, 850, 1141
AloI GAACNNNNNNTCC 2 cut(s) 454, 486
AluBI AGCT 6 cut(s) 554, 1026, 1047, 1112, 1176, 1191
AluI AGCT 6 cut(s) 554, 1026, 1047, 1112, 1176, 1191
Alw26I GTCTC 3 cut(s) 257, 491, 779
AlwI GGATC 1 cut(s) 772
Ama87I CYCGRG 1 cut(s) 883
AoxI GGCC 2 cut(s) 754, 853
ApeKI GCWGC 2 cut(s) 869, 1016
ApoI RAATTY 1 cut(s) 346
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 2 cut(s) 185, 305
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 3 cut(s) 124, 736, 1021
AvaI CYCGRG 1 cut(s) 883
AvaII GGWCC 2 cut(s) 185, 305
BaeGI GKGCMC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 856, 1028
BccI CCATC 3 cut(s) 167, 296, 557
BceAI ACGGC 1 cut(s) 682
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 4 cut(s) 183, 612, 852, 1143
BciVI GTATCC 1 cut(s) 205
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 3 cut(s) 257, 491, 779
BfaI CTAG 2 cut(s) 758, 873
BfmI CTRYAG 1 cut(s) 1228
BfuI GTATCC 1 cut(s) 205
BisI GCNGC 2 cut(s) 870, 1017
BlsI GCNGC 2 cut(s) 871, 1018
Bme1390I CCNGG 5 cut(s) 183, 339, 612, 852, 1143
Bme18I GGWCC 2 cut(s) 185, 305
BmeT110I CYCGRG 1 cut(s) 883
BmgT120I GGNCC 2 cut(s) 185, 305
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 5 cut(s) 183, 339, 612, 852, 1143
BmsI GCATC 4 cut(s) 165, 521, 577, 883
BpmI CTGGAG 2 cut(s) 834, 996
BpuMI CCSGG 1 cut(s) 339
Bsa29I ATCGAT 1 cut(s) 1071
BsaBI GATNNNNATC 1 cut(s) 443
BsaI GGTCTC 2 cut(s) 257, 491
BsaJI CCNNGG 3 cut(s) 238, 293, 423
BsaWI WCCGGW 2 cut(s) 484, 1035
Bsc4I CCNNNNNNNGG 2 cut(s) 458, 1230
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 269, 910
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 4 cut(s) 183, 612, 852, 1143
BseCI ATCGAT 1 cut(s) 1071
BseDI CCNNGG 3 cut(s) 238, 293, 423
BseGI GGATG 7 cut(s) 493, 565, 788, 829, 898, 1138, 1200
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 458, 1230
BseNI ACTGG 2 cut(s) 269, 910
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 1 cut(s) 329
BseXI GCAGC 2 cut(s) 856, 1028
BshFI GGCC 2 cut(s) 756, 855
BshVI ATCGAT 1 cut(s) 1071
BsiHKCI CYCGRG 1 cut(s) 883
BsiSI CCGG 4 cut(s) 87, 339, 485, 1036
BslFI GGGAC 1 cut(s) 1061
BslI CCNNNNNNNGG 2 cut(s) 458, 1230
BsmAI GTCTC 3 cut(s) 257, 491, 779
BsmFI GGGAC 1 cut(s) 1061
BsnI GGCC 2 cut(s) 756, 855
Bso31I GGTCTC 2 cut(s) 257, 491
BsoBI CYCGRG 1 cut(s) 883
Bsp1286I GDGCHC 1 cut(s) 329
Bsp1407I TGTACA 1 cut(s) 1133
Bsp143I GATC 2 cut(s) 764, 1123
BspANI GGCC 2 cut(s) 756, 855
BspDI ATCGAT 1 cut(s) 1071
BspLI GGNNCC 1 cut(s) 463
BspPI GGATC 1 cut(s) 772
BspTNI GGTCTC 2 cut(s) 257, 491
BsrFI RCCGGY 1 cut(s) 86
BsrGI TGTACA 1 cut(s) 1133
BsrI ACTGG 2 cut(s) 269, 910
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 3 cut(s) 238, 293, 423
BssMI GATC 2 cut(s) 764, 1123
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 4 cut(s) 183, 612, 852, 1143
Bst4CI ACNGT 5 cut(s) 141, 217, 427, 658, 748
Bst6I CTCTTC 2 cut(s) 996, 1174
BstAUI TGTACA 1 cut(s) 1133
BstC8I GCNNGC 3 cut(s) 88, 399, 628
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 2 cut(s) 293, 423
BstENI CCTNNNNNAGG 1 cut(s) 1228
BstF5I GGATG 7 cut(s) 493, 565, 788, 829, 898, 1138, 1200
BstKTI GATC 2 cut(s) 767, 1126
BstMAI GTCTC 3 cut(s) 257, 491, 779
BstMBI GATC 2 cut(s) 764, 1123
BstNI CCWGG 4 cut(s) 183, 612, 852, 1143
BstNSI RCATGY 2 cut(s) 401, 630
BstSCI CCNGG 5 cut(s) 181, 337, 610, 850, 1141
BstSFI CTRYAG 1 cut(s) 1228
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 856, 1028
BstXI CCANNNNNNTGG 1 cut(s) 1003
Bsu15I ATCGAT 1 cut(s) 1071
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 2 cut(s) 756, 855
BsuTUI ATCGAT 1 cut(s) 1071
BtgI CCRYGG 2 cut(s) 293, 423
BtsCI GGATG 7 cut(s) 493, 565, 788, 829, 898, 1138, 1200
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 3 cut(s) 262, 329, 372
Cac8I GCNNGC 3 cut(s) 88, 399, 628
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 185, 305
ClaI ATCGAT 1 cut(s) 1071
Csp6I GTAC 4 cut(s) 220, 520, 1000, 1134
CviAII CATG 8 cut(s) 269, 398, 431, 516, 627, 703, 917, 997
CviQI GTAC 4 cut(s) 220, 520, 1000, 1134
DdeI CTNAG 1 cut(s) 160
DpnI GATC 2 cut(s) 766, 1125
DpnII GATC 2 cut(s) 764, 1123
DraIII CACNNNGTG 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 996, 1174
EarI CTCTTC 2 cut(s) 996, 1174
Eco130I CCWWGG 1 cut(s) 238
Eco31I GGTCTC 2 cut(s) 257, 491
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 2 cut(s) 185, 305
Eco57I CTGAAG 1 cut(s) 396
Eco88I CYCGRG 1 cut(s) 883
EcoNI CCTNNNNNAGG 1 cut(s) 1228
EcoRII CCWGG 4 cut(s) 181, 610, 850, 1141
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 8 cut(s) 272, 401, 434, 519, 630, 706, 920, 1000
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 1061
FatI CATG 8 cut(s) 268, 397, 430, 515, 626, 702, 916, 996
FauNDI CATATG 1 cut(s) 769
Fnu4HI GCNGC 2 cut(s) 870, 1017
FokI GGATG 7 cut(s) 500, 572, 775, 836, 905, 1125, 1207
Fsp4HI GCNGC 2 cut(s) 870, 1017
FspBI CTAG 2 cut(s) 758, 873
GluI GCNGC 2 cut(s) 870, 1017
GsuI CTGGAG 2 cut(s) 834, 996
HaeIII GGCC 2 cut(s) 756, 855
HapII CCGG 4 cut(s) 87, 339, 485, 1036
Hin1II CATG 8 cut(s) 272, 401, 434, 519, 630, 706, 920, 1000
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 2 cut(s) 1024, 1045
HinfI GANTC 2 cut(s) 40, 1007
HpaII CCGG 4 cut(s) 87, 339, 485, 1036
HphI GGTGA 3 cut(s) 124, 736, 1021
Hpy166II GTNNAC 5 cut(s) 202, 220, 694, 1136, 1253
Hpy188I TCNGA 3 cut(s) 301, 586, 1210
Hpy188III TCNNGA 2 cut(s) 188, 308
Hpy8I GTNNAC 5 cut(s) 202, 220, 694, 1136, 1253
Hpy99I CGWCG 1 cut(s) 654
HpyAV CCTTC 2 cut(s) 374, 984
HpyCH4III ACNGT 5 cut(s) 141, 217, 427, 658, 748
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 7 cut(s) 97, 626, 725, 731, 795, 896, 932
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 8 cut(s) 272, 401, 434, 519, 630, 706, 920, 1000
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 764, 1123
LmnI GCTCC 1 cut(s) 635
Lsp1109I GCAGC 2 cut(s) 856, 1028
LweI GCATC 4 cut(s) 165, 521, 577, 883
MaeI CTAG 2 cut(s) 758, 873
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 3 cut(s) 901, 925, 1087
MalI GATC 2 cut(s) 766, 1125
MboI GATC 2 cut(s) 764, 1123
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 3 cut(s) 16, 330, 346
MmeI TCCRAC 1 cut(s) 1007
MnlI CCTC 8 cut(s) 88, 345, 489, 517, 883, 941, 1226, 1288
MreI CGCCGGCG 1 cut(s) 86
MroNI GCCGGC 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 3 cut(s) 146, 225, 1082
MslI CAYNNNNRTG 4 cut(s) 102, 267, 585, 921
MspI CCGG 4 cut(s) 87, 339, 485, 1036
MspR9I CCNGG 5 cut(s) 183, 339, 612, 852, 1143
MvaI CCWGG 4 cut(s) 183, 612, 852, 1143
NaeI GCCGGC 1 cut(s) 88
NciI CCSGG 1 cut(s) 339
NdeI CATATG 1 cut(s) 769
NdeII GATC 2 cut(s) 764, 1123
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 8 cut(s) 272, 401, 434, 519, 630, 706, 920, 1000
NlaIV GGNNCC 1 cut(s) 463
NspI RCATGY 2 cut(s) 401, 630
PaeI GCATGC 2 cut(s) 401, 630
PaeR7I CTCGAG 1 cut(s) 883
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PdiI GCCGGC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 40, 1007
PflMI CCANNNNNTGG 1 cut(s) 458
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 2 cut(s) 871, 1018
PsiI TTATAA 2 cut(s) 506, 1291
Psp6I CCWGG 4 cut(s) 181, 610, 850, 1141
PspGI CCWGG 4 cut(s) 181, 610, 850, 1141
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 2 cut(s) 185, 305
PspXI VCTCGAGB 1 cut(s) 883
PsrI GAACNNNNNNTAC 2 cut(s) 810, 842
RsaI GTAC 4 cut(s) 221, 521, 1001, 1135
RsaNI GTAC 4 cut(s) 220, 520, 1000, 1134
RseI CAYNNNNRTG 4 cut(s) 102, 267, 585, 921
SaqAI TTAA 3 cut(s) 146, 225, 1082
SatI GCNGC 2 cut(s) 870, 1017
Sau3AI GATC 2 cut(s) 764, 1123
Sau96I GGNCC 2 cut(s) 185, 305
ScrFI CCNGG 5 cut(s) 183, 339, 612, 852, 1143
SduI GDGCHC 1 cut(s) 329
SfaNI GCATC 4 cut(s) 165, 521, 577, 883
SfcI CTRYAG 1 cut(s) 1228
Sfr274I CTCGAG 1 cut(s) 883
SgrAI CRCCGGYG 1 cut(s) 86
SinI GGWCC 2 cut(s) 185, 305
SlaI CTCGAG 1 cut(s) 883
SmiMI CAYNNNNRTG 4 cut(s) 102, 267, 585, 921
SmlI CTYRAG 1 cut(s) 883
SmoI CTYRAG 1 cut(s) 883
SphI GCATGC 2 cut(s) 401, 630
Sse9I AATT 3 cut(s) 16, 330, 346
SspI AATATT 1 cut(s) 366
SspMI CTAG 2 cut(s) 758, 873
StyD4I CCNGG 5 cut(s) 181, 337, 610, 850, 1141
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 5 cut(s) 141, 217, 427, 658, 748
TaiI ACGT 1 cut(s) 225
TaqI TCGA 6 cut(s) 23, 32, 652, 884, 1071, 1172
TasI AATT 3 cut(s) 16, 330, 346
TatI WGTACW 2 cut(s) 999, 1133
TfiI GAWTC 2 cut(s) 40, 1007
Tru1I TTAA 3 cut(s) 146, 225, 1082
Tru9I TTAA 3 cut(s) 146, 225, 1082
TscAI CASTG 3 cut(s) 269, 329, 379
TseI GCWGC 2 cut(s) 869, 1016
TspGWI ACGGA 2 cut(s) 282, 777
TspRI CASTG 3 cut(s) 269, 329, 379
Van91I CCANNNNNTGG 1 cut(s) 458
VpaK11BI GGWCC 2 cut(s) 185, 305
XagI CCTNNNNNAGG 1 cut(s) 1228
XapI RAATTY 1 cut(s) 346
XceI RCATGY 2 cut(s) 401, 630
XcmI CCANNNNNNNNNTGG 2 cut(s) 245, 291
XhoI CTCGAG 1 cut(s) 883
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 758, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.