Rorug06G0166500

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000320
Physical Location & Seq
Forward (+)
24040358 .. 24041104
747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0166500.1

Sequence Viewer

Length: 747 bp
ATGATGAGTGAAGGCTATGTTTGGTTAGCAACTACTGCGATAACGGATGTTTTACAGCGGACAAAATCATCAGTCATCAAGTCCATGGAAGGTGTATTGGGTATAAAAACTTATGTTCCAGAAACCATGGAGCTTGAAGAATTCAAGTTTCGGTGGAAACGGCAATTCCAACTAGACAATCCAACCATCATTAATGCTGAACTGGATGTTTTTGGACTTCGGGCTTATGATGCTGATTTTGCACTAGCCATGGCCATTGAACAAGTGCGGACTACCAGCTTATTTGGCTTCCAAAAGACAAATGCTTCGTCGATCAGGTCGACAGATCTTGATAGTTTTGAGGTTTCTGAAAATGGTCCAGAACTTTGCAAAGACTTGTCAATCACAAGATTTCAAGGCATTGCTGGAGATGTCATTGTTGATGGACAATTTCAATCATCAACTTTTAAGATAGTTAATTTAAATGGTGGTGGAGAAAGAGTAATTGTATTTTGGACACCGAAAAATGGACTAATGAGAAAATTGGGATCATCAGCAAACTCGCGAGTATTTTCAACGTCTAAGTGCAATCTTGGACCAATAATATGGCCTGGAGATGCAATCTCTGTCCCAAAGGGATGGGAGATCCCTACAAGTGGCAAGAAGTTGAGAATAGGAGTTCCTATGAAGGATGGTTTTACTGAATTTGTTACTGTCAAAAAAGATCTTAGCAGTAATAGCACAGATGTTTCTGGGTTAAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

248

Amino Acids

27.44

Weight (kDa)

7.66

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANF_receptor PF01094 1 - 156 3.8e-21 Receptor family ligand binding region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 320
AccII CGCG 1 cut(s) 544
AciI CCGC 2 cut(s) 58, 268
AclWI GGATC 2 cut(s) 535, 619
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 140, 683
AfiI CCNNNNNNNGG 2 cut(s) 506, 635
AgsI TTSAA 6 cut(s) 137, 145, 260, 395, 434, 555
AjnI CCWGG 1 cut(s) 589
AluBI AGCT 2 cut(s) 133, 279
AluI AGCT 2 cut(s) 133, 279
AlwI GGATC 2 cut(s) 535, 619
AoxI GGCC 2 cut(s) 252, 587
ApoI RAATTY 2 cut(s) 140, 683
ArsI GACNNNNNNTTYG 4 cut(s) 289, 293, 321, 325
AseI ATTAAT 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 356, 575
AvaII GGWCC 2 cut(s) 356, 575
BalI TGGCCA 1 cut(s) 254
BccI CCATC 4 cut(s) 194, 416, 612, 665
BceAI ACGGC 1 cut(s) 176
BciT130I CCWGG 1 cut(s) 591
BfaI CTAG 2 cut(s) 173, 245
BglII AGATCT 2 cut(s) 325, 703
Bme1390I CCNGG 1 cut(s) 591
Bme18I GGWCC 2 cut(s) 356, 575
BmgT120I GGNCC 2 cut(s) 356, 575
BmrFI CCNGG 1 cut(s) 591
BmsI GCATC 2 cut(s) 220, 586
BpmI CTGGAG 2 cut(s) 426, 612
BsaJI CCNNGG 3 cut(s) 84, 126, 249
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 635
Bse1I ACTGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 399
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 3 cut(s) 84, 126, 249
BseGI GGATG 4 cut(s) 52, 211, 623, 676
BseLI CCNNNNNNNGG 2 cut(s) 506, 635
BseMI GCAATG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 544
BshFI GGCC 2 cut(s) 254, 589
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 2 cut(s) 506, 635
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 2 cut(s) 254, 589
Bsp143I GATC 5 cut(s) 312, 325, 527, 624, 703
Bsp19I CCATGG 3 cut(s) 84, 126, 249
Bsp68I TCGCGA 1 cut(s) 544
BspACI CCGC 2 cut(s) 58, 268
BspANI GGCC 2 cut(s) 254, 589
BspFNI CGCG 1 cut(s) 544
BspPI GGATC 2 cut(s) 535, 619
BsrDI GCAATG 1 cut(s) 399
BsrI ACTGG 1 cut(s) 207
BssECI CCNNGG 3 cut(s) 84, 126, 249
BssMI GATC 5 cut(s) 312, 325, 527, 624, 703
BssT1I CCWWGG 3 cut(s) 84, 126, 249
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 1 cut(s) 694
BstAPI GCANNNNNTGC 1 cut(s) 35
BstDEI CTNAG 2 cut(s) 561, 707
BstDSI CCRYGG 3 cut(s) 84, 126, 249
BstF5I GGATG 4 cut(s) 52, 211, 623, 676
BstFNI CGCG 1 cut(s) 544
BstKTI GATC 5 cut(s) 315, 328, 530, 627, 706
BstMBI GATC 5 cut(s) 312, 325, 527, 624, 703
BstMWI GCNNNNNNNGC 5 cut(s) 35, 230, 239, 285, 717
BstNI CCWGG 1 cut(s) 591
BstSCI CCNGG 1 cut(s) 589
BstUI CGCG 1 cut(s) 544
BstX2I RGATCY 3 cut(s) 325, 624, 703
BstXI CCANNNNNNTGG 2 cut(s) 585, 618
BstYI RGATCY 3 cut(s) 325, 624, 703
BsuRI GGCC 2 cut(s) 254, 589
BtgI CCRYGG 3 cut(s) 84, 126, 249
BtsCI GGATG 4 cut(s) 52, 211, 623, 676
BtuMI TCGCGA 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 356, 575
CviAII CATG 3 cut(s) 85, 127, 250
CviJI RGCY 8 cut(s) 15, 133, 224, 248, 254, 279, 288, 589
CviKI_1 RGCY 8 cut(s) 15, 133, 224, 248, 254, 279, 288, 589
DdeI CTNAG 2 cut(s) 561, 707
DpnI GATC 5 cut(s) 314, 327, 529, 626, 705
DpnII GATC 5 cut(s) 312, 325, 527, 624, 703
DraI TTTAAA 1 cut(s) 462
EaeI YGGCCR 1 cut(s) 252
Eco130I CCWWGG 3 cut(s) 84, 126, 249
Eco47I GGWCC 2 cut(s) 356, 575
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 589
EcoT14I CCWWGG 3 cut(s) 84, 126, 249
ErhI CCWWGG 3 cut(s) 84, 126, 249
FaeI CATG 3 cut(s) 88, 130, 253
FaiI YATR 9 cut(s) 18, 86, 104, 114, 128, 228, 251, 586, 665
FaqI GGGAC 1 cut(s) 593
FatI CATG 3 cut(s) 84, 126, 249
FblI GTMKAC 1 cut(s) 320
FokI GGATG 4 cut(s) 59, 218, 630, 683
FspBI CTAG 2 cut(s) 173, 245
GsuI CTGGAG 2 cut(s) 426, 612
HaeIII GGCC 2 cut(s) 254, 589
Hin1II CATG 3 cut(s) 88, 130, 253
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
Hpy166II GTNNAC 1 cut(s) 321
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 4 cut(s) 119, 329, 359, 543
Hpy8I GTNNAC 1 cut(s) 321
Hpy99I CGWCG 1 cut(s) 313
HpyAV CCTTC 3 cut(s) 5, 83, 661
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 4 cut(s) 242, 369, 567, 599
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 230, 239, 285, 717
HpyF3I CTNAG 2 cut(s) 561, 707
HpySE526I ACGT 1 cut(s) 557
Hsp92II CATG 3 cut(s) 88, 130, 253
Kzo9I GATC 5 cut(s) 312, 325, 527, 624, 703
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 9 cut(s) 132, 188, 289, 301, 372, 390, 576, 603, 717
LweI GCATC 2 cut(s) 220, 586
MaeI CTAG 2 cut(s) 173, 245
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 1 cut(s) 688
MalI GATC 5 cut(s) 314, 327, 529, 626, 705
MboI GATC 5 cut(s) 312, 325, 527, 624, 703
MboII GAAGA 1 cut(s) 149
MflI RGATCY 3 cut(s) 325, 624, 703
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 7 cut(s) 140, 164, 428, 457, 483, 521, 683
MluNI TGGCCA 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 193, 206
MnlI CCTC 1 cut(s) 334
Mox20I TGGCCA 1 cut(s) 254
MscI TGGCCA 1 cut(s) 254
MseI TTAA 5 cut(s) 192, 447, 456, 461, 737
Msp20I TGGCCA 1 cut(s) 254
MspA1I CMGCKG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 1 cut(s) 544
MwoI GCNNNNNNNGC 5 cut(s) 35, 230, 239, 285, 717
NcoI CCATGG 3 cut(s) 84, 126, 249
NdeII GATC 5 cut(s) 312, 325, 527, 624, 703
NlaIII CATG 3 cut(s) 88, 130, 253
NruI TCGCGA 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PshBI ATTAAT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspPI GGNCC 2 cut(s) 356, 575
PsuI RGATCY 3 cut(s) 325, 624, 703
RruI TCGCGA 1 cut(s) 544
SalI GTCGAC 1 cut(s) 319
SaqAI TTAA 5 cut(s) 192, 447, 456, 461, 737
Sau3AI GATC 5 cut(s) 312, 325, 527, 624, 703
Sau96I GGNCC 2 cut(s) 356, 575
ScrFI CCNGG 1 cut(s) 591
SetI ASST 6 cut(s) 94, 135, 281, 320, 345, 560
SfaNI GCATC 2 cut(s) 220, 586
SinI GGWCC 2 cut(s) 356, 575
SmiI ATTTAAAT 1 cut(s) 462
Sse9I AATT 7 cut(s) 140, 164, 428, 457, 483, 521, 683
SsiI CCGC 2 cut(s) 58, 268
SspMI CTAG 2 cut(s) 173, 245
StyD4I CCNGG 1 cut(s) 589
StyI CCWWGG 3 cut(s) 84, 126, 249
SwaI ATTTAAAT 1 cut(s) 462
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 1 cut(s) 560
TaqI TCGA 2 cut(s) 311, 320
TasI AATT 7 cut(s) 140, 164, 428, 457, 483, 521, 683
Tru1I TTAA 5 cut(s) 192, 447, 456, 461, 737
Tru9I TTAA 5 cut(s) 192, 447, 456, 461, 737
TspDTI ATGAA 1 cut(s) 680
TspGWI ACGGA 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 356, 575
VspI ATTAAT 1 cut(s) 192
XapI RAATTY 2 cut(s) 140, 683
XmiI GTMKAC 1 cut(s) 320
XspI CTAG 2 cut(s) 173, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.