RchiOBHm_Chr6g0284761

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000320
Physical Location & Seq
Reverse (-)
48106335 .. 48107636
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25538

Sequence Viewer

Length: 696 bp
ATGTTTATAACAGCTTCCATGAATTCACTCTACTGTGAAGATTCAGGCTTCTTGAGCTGCATGGAGATACCCGTTGCTACAAGCGTAAATAACATTAGCTGGGTGAACCCGTGGAGCACAGATCTCTTGCAAGCTTACTACAGGAACATAAGTGGGGTTTACTCAACAGATTTTCCAGACCACCCGCCTACTTATTATAACTTTACAGACAAAACTTACTCGAAATATACCGTGTTAACGGTACAAGGGACAAAGGTGAAGGTGTTAAGTTATAATGAGTCGGTTGAGATTGTGTTCCAAGGGACTGATGTGCAAGGAGGCTCTGTGAATCATCCACTGCATATGCACGGATATAAGTTCTATGTCGTTGGATATGGTTTCGGAAATTATGACAATGAGACTGACCCGAAAGGGTTTGATTTGGTTGATCCTCCTCATGTCACTACATTTGGAGTTCCCAAAAATGGATGGCTGGCTATCAGATTCATAGCAAATAATCCTGGTGTTTGGTTTTGGCATTGTCATATGGAAAGACACACGACTTTGGGTATGGAAGCTGCATTCATAGTGAAGAATGGGGACACCGCTGAAACTAGCATACTCGAACCCCCAGCTTACACGCCTTCCTGTAATGTTCCATTGGTTTCTCGTATCGAAAATTCTGATGAGTTTGTTGAAAAGTTAATAGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

231

Amino Acids

26.04

Weight (kDa)

4.92

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase_2 PF07731 58 - 193 7.3e-38 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000320)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12640 FvH4_2g18980 FvH4_2g18990 FvH4_2g40270 FvH4_2g40270 FvH4_4g22740 FvH4_4g22740 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g35760 FvH4_5g36460 FvH4_5g36460 FvH4_6g39950 FvH4_6g39970 FvH4_6g39983 FvH4_6g39990
rosa_chinensis RchiOBHm_Chr2g0154481 RchiOBHm_Chr2g0154511 RchiOBHm_Chr4g0428961 RchiOBHm_Chr6g0252431 RchiOBHm_Chr6g0273301 RchiOBHm_Chr6g0273631 RchiOBHm_Chr6g0273651 RchiOBHm_Chr6g0284751 RchiOBHm_Chr6g0284761 RchiOBHm_Chr6g0300491 RchiOBHm_Chr7g0237421 RchiOBHm_Chr7g0238581
rosa_laevigata RLG00000000906 RLG00000001006 RLG00000007110 RLG00000011333 RLG00000012721 RLG00000013605 RLG00000013626 RLG00000020780 RLG00000020782 RLG00000020783 RLG00000020786
rosa_multiflora Rmu_co8321753.1_g000001 Rmu_sc0000239.1_g000020 Rmu_sc0000686.1_g000001 Rmu_sc0000686.1_g000003 Rmu_sc0000686.1_g000005 Rmu_sc0001476.1_g000011 Rmu_sc0002231.1_g000002 Rmu_sc0002231.1_g000016 Rmu_sc0002690.1_g000003 Rmu_sc0002717.1_g000015 Rmu_sc0002923.1_g000026 Rmu_sc0003808.1_g000016 Rmu_sc0006475.1_g000008 Rmu_sc0006475.1_g000012 Rmu_sc0006475.1_g000018 Rmu_sc0014815.1_g000004 Rmu_sc0015313.1_g000012
rosa_roxburghii Rroxscaffold_2G00094270 Rroxscaffold_2G00094290 Rroxscaffold_3G00222950 Rroxscaffold_3G00224250 Rroxscaffold_5G00370630 Rroxscaffold_7G00167740 Rroxscaffold_7G00184410 Rroxscaffold_7G00195190 Rroxscaffold_7G00195460
rosa_rugosa Rorug02G0444600 Rorug04G0231100 Rorug04G0231200 Rorug06G0074000 Rorug06G0076800 Rorug06G0166400 Rorug06G0166500 Rorug06G0166600 Rorug06G0296400 Rorug07G0303000
rosa_samantha Rh2CG494600 Rh2CG494700 Rh2DG530800 Rh2DG530900 Rh2DG531000 Rh4AG287500 Rh4AG403800 Rh4BG293400 Rh4BG415100 Rh4DG290500 Rh6AG191000 Rh6AG191300 Rh6BG192500 Rh6BG194800 Rh6BG195200 Rh6BG279500 Rh6BG279600 Rh6DG183900 Rh6DG186600 Rh6DG274300 Rh6DG274500 Rh6DG409500 Rh7AG460600 Rh7AG468200 Rh7BG430200
rosa_wichuraiana Rw2G041820 Rw2G041830 Rw2G041840 Rw4G024930 Rw6G016470 Rw6G016720 Rw6G016730 Rw6G024020 Rw6G024030 Rw6G035790 Rw7G038130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 8, 198, 273
AciI CCGC 2 cut(s) 185, 585
AclWI GGATC 1 cut(s) 422
AcsI RAATTY 2 cut(s) 22, 658
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 464
AgsI TTSAA 1 cut(s) 677
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 6 cut(s) 14, 57, 99, 134, 557, 614
AluI AGCT 6 cut(s) 14, 57, 99, 134, 557, 614
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 422
ApeKI GCWGC 2 cut(s) 57, 557
ApoI RAATTY 2 cut(s) 22, 658
AsuHPI GGTGA 2 cut(s) 115, 268
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 44, 544
BccI CCATC 1 cut(s) 462
BciT130I CCWGG 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 139
BglII AGATCT 1 cut(s) 121
BisI GCNGC 2 cut(s) 58, 558
BlsI GCNGC 2 cut(s) 59, 559
Bme1390I CCNGG 1 cut(s) 501
BmrFI CCNGG 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 73
BsaJI CCNNGG 2 cut(s) 110, 298
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 1 cut(s) 464
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 110, 298
BseGI GGATG 2 cut(s) 331, 473
BseLI CCNNNNNNNGG 1 cut(s) 464
BseRI GAGGAG 1 cut(s) 423
BseXI GCAGC 2 cut(s) 44, 544
BseYI CCCAGC 2 cut(s) 99, 610
BsiHKAI GWGCWC 1 cut(s) 119
BslFI GGGAC 3 cut(s) 262, 316, 593
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 3 cut(s) 262, 316, 593
BsmI GAATGC 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 121, 427, 688
BspACI CCGC 2 cut(s) 185, 585
BspPI GGATC 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 110, 298
BssMI GATC 3 cut(s) 121, 427, 688
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 3 cut(s) 35, 232, 241
BstC8I GCNNGC 2 cut(s) 132, 474
BstDSI CCRYGG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 331, 473
BstKTI GATC 3 cut(s) 124, 430, 691
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 3 cut(s) 121, 427, 688
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 139
BstV1I GCAGC 2 cut(s) 44, 544
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 110
BtsCI GGATG 2 cut(s) 331, 473
BtsI GCAGTG 1 cut(s) 335
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 2 cut(s) 132, 474
Csp6I GTAC 1 cut(s) 242
CviAII CATG 3 cut(s) 19, 61, 437
CviQI GTAC 1 cut(s) 242
DpnI GATC 3 cut(s) 123, 429, 690
DpnII GATC 3 cut(s) 121, 427, 688
Eco130I CCWWGG 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 22, 64, 440
FaqI GGGAC 3 cut(s) 262, 316, 593
FatI CATG 3 cut(s) 18, 60, 436
FauI CCCGC 1 cut(s) 192
FauNDI CATATG 2 cut(s) 342, 525
Fnu4HI GCNGC 2 cut(s) 58, 558
FokI GGATG 2 cut(s) 318, 480
Fsp4HI GCNGC 2 cut(s) 58, 558
FspBI CTAG 1 cut(s) 594
GluI GCNGC 2 cut(s) 58, 558
GsaI CCCAGC 2 cut(s) 103, 614
Hin1II CATG 3 cut(s) 22, 64, 440
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 4 cut(s) 41, 278, 328, 483
HpaI GTTAAC 1 cut(s) 237
HphI GGTGA 2 cut(s) 115, 268
Hpy166II GTNNAC 3 cut(s) 106, 160, 237
Hpy188I TCNGA 3 cut(s) 383, 482, 664
Hpy188III TCNNGA 2 cut(s) 52, 176
Hpy8I GTNNAC 3 cut(s) 106, 160, 237
HpyAV CCTTC 2 cut(s) 253, 633
HpyCH4III ACNGT 3 cut(s) 35, 232, 241
HpyCH4V TGCA 6 cut(s) 60, 130, 313, 340, 346, 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
Hsp92II CATG 3 cut(s) 22, 64, 440
KspAI GTTAAC 1 cut(s) 237
Kzo9I GATC 3 cut(s) 121, 427, 688
LmnI GCTCC 1 cut(s) 114
LpnPI CCDG 9 cut(s) 30, 85, 127, 189, 458, 486, 513, 624, 640
Lsp1109I GCAGC 2 cut(s) 44, 544
MaeI CTAG 1 cut(s) 594
MaeIII GTNAC 1 cut(s) 439
MalI GATC 3 cut(s) 123, 429, 690
MboI GATC 3 cut(s) 121, 427, 688
MboII GAAGA 2 cut(s) 50, 583
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 3 cut(s) 22, 385, 658
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 3 cut(s) 311, 441, 444
MseI TTAA 3 cut(s) 236, 266, 683
MspA1I CMGCKG 1 cut(s) 587
MspR9I CCNGG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 560
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeI CATATG 2 cut(s) 342, 525
NdeII GATC 3 cut(s) 121, 427, 688
NlaIII CATG 3 cut(s) 22, 64, 440
NmuCI GTSAC 1 cut(s) 439
PctI GAATGC 1 cut(s) 560
PfeI GAWTC 3 cut(s) 41, 328, 483
PkrI GCNGC 2 cut(s) 59, 559
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PsiI TTATAA 3 cut(s) 8, 198, 273
Psp6I CCWGG 1 cut(s) 499
PspFI CCCAGC 2 cut(s) 99, 610
PspGI CCWGG 1 cut(s) 499
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SaqAI TTAA 3 cut(s) 236, 266, 683
SatI GCNGC 2 cut(s) 58, 558
Sau3AI GATC 3 cut(s) 121, 427, 688
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 1 cut(s) 119
SetI ASST 8 cut(s) 16, 59, 101, 136, 258, 264, 559, 616
SfcI CTRYAG 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 3 cut(s) 22, 385, 658
SsiI CCGC 2 cut(s) 185, 585
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 3 cut(s) 35, 232, 241
TaqI TCGA 3 cut(s) 221, 603, 654
TasI AATT 3 cut(s) 22, 385, 658
TfiI GAWTC 3 cut(s) 41, 328, 483
Tru1I TTAA 3 cut(s) 236, 266, 683
Tru9I TTAA 3 cut(s) 236, 266, 683
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 2 cut(s) 57, 557
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 3 cut(s) 35, 475, 553
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 342
XapI RAATTY 2 cut(s) 22, 658
XspI CTAG 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.