pycom10g02760

Programmed cell death protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011088
Physical Location & Seq
Reverse (-)
3066109 .. 3067532
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g02760.1

Sequence Viewer

Length: 1323 bp
ATGAACTATTTACCCAAAGATTCGAAAGGGATTAAAGTATTGAAAAGAGCTGAAAAGGGCTACTTAGCAGCCCCACTCCATGGAGAAATCATTGAGCGGCGATGGGGAGGTAGCAAGAAAATGACTGTGGAGGATGTCAAAGCTAAGATAAATGATTTGTTGATAGAGTATGTAGTGAGTGGTGACAAGAAAGAGGCGTGCAGATGCATCAAGGATTTGAAAGTTCCTTTTTTTCACCATGAAATAGTTAAACGAGCTCTTGTAATGGCAATGGAGAGGCGTCAAGCTGAAAGCCAGCTACTAGATTTGCTGAAAGAAGCTGCTGAAGAAGTCATTGATCGATCCAACGCAGCATCAGAGGGCTGGTTGTGTGCTTCATCTTTGAAATCACTCTCTCTGCAACCAGAAAAGCGATCTTTAGAAGATAGTGTTGCCAAAGTTTTCAAGACGAAGGCCCAATCTATTATTCAAGAGTACTTCTTATCTGGGGATATCTCAGAAGTAAACAGTAGTCTAGAGTCTGAGAATAGTACTTGTTCACCTGAGCTGAATGCTATCTTTGTTAAAAGATTGATAACTCTAGCAATGGATCGGAAGAACAGAGAGAAGGAAACAGCATCCATTTTACTGTCATCTCTGTGTTTTCCAGCTGATGATGTTGTAAATGGGTTTGTAATGTTGCTAGAATCTGCAGATGACACAGCTTTGGATAATCCAGTAGTTGTCGAAGATCATGCAATGTTTCTCGCTAGATCTGTGGTGGACGAAGTTCTAGCCCCACAGAACTTGGAAGAGATTGGAAGTCAGTGCTTGGCACAAGAGTCAATTGGGAGCAAGGTCCTTAAAATGGCCAAGTCATTGCTAAAGGCTCGGCTTTCTGGGGAGCGGATATTAAGGTGTTGGGGTGGTGGTGGCAGACCTGGATGGGCAGTTGAGGATGTGAAGGACAAGATTTGGAAGTTGCTGGAAGAGTTTGAGTCTGGAGGGGATGTAAGAGAGGCTTGCCGCTGCATGAAGGAGTTAGGCATGCCATTTTTCAACCATGAGGTTGTCAAAAAAGCTCTGGTGACGATTATGGAAAAGAAGAATGAGAGACTCTGGATTTTGCTGGAGGAAAGTTTTGCCTCTGGACTCATCACAATGAACCAAATGGCAAAGGGGTTTGGTAGAGTTGCAGAGTCTCTAGATGATTTGGCTTTGGATGTTCCTGATGCCCAGAAACAATTTACACATTACGTTGAACAAGCAAAGAATGCAGGGTGGTTGGATTCCTCATTTTGTTTCAACAAATTAGGACACAGAACAGATAATGGCACTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05205 ko05206 map05205 map05206
Pfam Domains
Protein Families
MA3

Protein Analysis

441

Amino Acids

49.09

Weight (kDa)

5.74

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 47 - 113 4.6e-15 MA3 domain
MA3 PF02847 148 - 258 4.8e-15 MA3 domain
MA3 PF02847 314 - 423 3.3e-30 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22730
fragaria_vesca FvH4_2g12790
malus_domestica MD05G1036500.v1.1 MD10G1038400.v1.1
prunus_persica Prupe.8G044800_v2.0.a1
pyrus_communis pycom05g02690 pycom10g02640 pycom10g02760
rosa_chinensis RchiOBHm_Chr6g0273671
rosa_laevigata RLG00000013603
rosa_multiflora Rmu_sc0002231.1_g000021
rosa_roxburghii Rroxscaffold_7G00195170
rosa_rugosa Rorug06G0076800 Rorug06G0076900 Rorug06G0077000
rosa_samantha Rh6AG191400 Rh6BG195400 Rh6CG194900 Rh6DG186800
rosa_wichuraiana Rw6G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 80
AccBSI CCGCTC 2 cut(s) 97, 886
AciI CCGC 3 cut(s) 97, 886, 1006
AclWI GGATC 2 cut(s) 336, 597
AcoI YGGCCR 1 cut(s) 849
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 280
AfaI GTAC 2 cut(s) 476, 532
AfiI CCNNNNNNNGG 2 cut(s) 80, 847
AgsI TTSAA 8 cut(s) 43, 220, 385, 445, 470, 1039, 1241, 1285
AjnI CCWGG 1 cut(s) 919
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 1087, 1185
AlwI GGATC 2 cut(s) 336, 597
AoxI GGCC 2 cut(s) 453, 849
ApeKI GCWGC 4 cut(s) 68, 320, 350, 1008
AspS9I GGNCC 2 cut(s) 454, 838
AsuHPI GGTGA 4 cut(s) 194, 227, 531, 1078
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 838
BalI TGGCCA 1 cut(s) 851
BanII GRGCYC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 4 cut(s) 80, 307, 362, 995
BccI CCATC 2 cut(s) 96, 918
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 1 cut(s) 921
BcoDI GTCTC 2 cut(s) 1087, 1185
BfaI CTAG 7 cut(s) 302, 515, 581, 683, 750, 773, 1184
BfmI CTRYAG 1 cut(s) 690
BglII AGATCT 1 cut(s) 752
BisI GCNGC 6 cut(s) 69, 98, 321, 351, 1006, 1009
BlsI GCNGC 6 cut(s) 70, 99, 322, 352, 1007, 1010
BmcAI AGTACT 2 cut(s) 476, 532
Bme1390I CCNGG 1 cut(s) 921
Bme18I GGWCC 1 cut(s) 838
BmgT120I GGNCC 2 cut(s) 454, 838
BmrFI CCNGG 1 cut(s) 921
BmsI GCATC 5 cut(s) 194, 216, 362, 626, 1201
BpmI CTGGAG 2 cut(s) 1002, 1130
Bpu10I CCTNAGC 1 cut(s) 543
Bpu14I TTCGAA 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 340
BsaHI GRCGYC 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 847
Bse1I ACTGG 2 cut(s) 716, 1321
Bse3DI GCAATG 4 cut(s) 276, 591, 744, 857
BseBI CCWGG 1 cut(s) 921
BseCI ATCGAT 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 6 cut(s) 139, 617, 929, 943, 994, 1207
BseLI CCNNNNNNNGG 2 cut(s) 80, 847
BseMI GCAATG 4 cut(s) 276, 591, 744, 857
BseMII CTCAG 3 cut(s) 510, 513, 534
BseNI ACTGG 2 cut(s) 716, 1321
BseXI GCAGC 4 cut(s) 80, 307, 362, 995
BsgI GTGCAG 1 cut(s) 220
BshFI GGCC 2 cut(s) 455, 851
BshVI ATCGAT 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 259
BslI CCNNNNNNNGG 2 cut(s) 80, 847
BsmAI GTCTC 2 cut(s) 1087, 1185
BsmI GAATGC 2 cut(s) 556, 1258
BsnI GGCC 2 cut(s) 455, 851
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 6 cut(s) 337, 341, 413, 589, 730, 752
Bsp19I CCATGG 1 cut(s) 79
BspACI CCGC 3 cut(s) 97, 886, 1006
BspANI GGCC 2 cut(s) 455, 851
BspCNI CTCAG 3 cut(s) 509, 514, 535
BspDI ATCGAT 1 cut(s) 340
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 2 cut(s) 336, 597
BspT104I TTCGAA 1 cut(s) 23
BsrBI CCGCTC 2 cut(s) 97, 886
BsrDI GCAATG 4 cut(s) 276, 591, 744, 857
BsrI ACTGG 2 cut(s) 716, 1321
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 6 cut(s) 337, 341, 413, 589, 730, 752
BssNI GRCGYC 1 cut(s) 280
BssT1I CCWWGG 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 921
Bst4CI ACNGT 3 cut(s) 127, 509, 630
Bst6I CTCTTC 2 cut(s) 786, 963
BstACI GRCGYC 1 cut(s) 280
BstAPI GCANNNNNTGC 1 cut(s) 1253
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 4 cut(s) 199, 296, 1003, 1028
BstDEI CTNAG 5 cut(s) 64, 144, 496, 522, 543
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 6 cut(s) 139, 617, 929, 943, 994, 1207
BstKTI GATC 6 cut(s) 340, 344, 416, 592, 733, 755
BstMAI GTCTC 2 cut(s) 1087, 1185
BstMBI GATC 6 cut(s) 337, 341, 413, 589, 730, 752
BstMWI GCNNNNNNNGC 1 cut(s) 1253
BstNI CCWGG 1 cut(s) 921
BstNSI RCATGY 1 cut(s) 1030
BstSCI CCNGG 1 cut(s) 919
BstSFI CTRYAG 1 cut(s) 690
BstV1I GCAGC 4 cut(s) 80, 307, 362, 995
BstX2I RGATCY 1 cut(s) 752
BstYI RGATCY 1 cut(s) 752
Bsu15I ATCGAT 1 cut(s) 340
BsuRI GGCC 2 cut(s) 455, 851
BsuTUI ATCGAT 1 cut(s) 340
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 6 cut(s) 139, 617, 929, 943, 994, 1207
BtsIMutI CAGTG 2 cut(s) 812, 1314
Cac8I GCNNGC 4 cut(s) 199, 296, 1003, 1028
Cfr13I GGNCC 2 cut(s) 454, 838
ClaI ATCGAT 1 cut(s) 340
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 475, 531
CspCI CAANNNNNGTGG 2 cut(s) 768, 803
CviAII CATG 6 cut(s) 80, 239, 734, 1012, 1027, 1043
CviQI GTAC 2 cut(s) 475, 531
DdeI CTNAG 5 cut(s) 64, 144, 496, 522, 543
DpnI GATC 6 cut(s) 339, 343, 415, 591, 732, 754
DpnII GATC 6 cut(s) 337, 341, 413, 589, 730, 752
EaeI YGGCCR 1 cut(s) 849
Eam1104I CTCTTC 2 cut(s) 786, 963
EarI CTCTTC 2 cut(s) 786, 963
Ecl136II GAGCTC 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 259
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 838
Eco53kI GAGCTC 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 345
EcoICRI GAGCTC 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 838
EcoRII CCWGG 1 cut(s) 919
EcoRV GATATC 1 cut(s) 493
EcoT14I CCWWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 6 cut(s) 83, 242, 737, 1015, 1030, 1046
FaiI YATR 8 cut(s) 81, 171, 240, 735, 1013, 1028, 1044, 1076
FalI AAGNNNNNCTT 4 cut(s) 47, 79, 985, 1017
FatI CATG 6 cut(s) 79, 238, 733, 1011, 1026, 1042
Fnu4HI GCNGC 6 cut(s) 69, 98, 321, 351, 1006, 1009
FokI GGATG 6 cut(s) 146, 604, 936, 950, 1001, 1214
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 6 cut(s) 69, 98, 321, 351, 1006, 1009
FspBI CTAG 7 cut(s) 302, 515, 581, 683, 750, 773, 1184
GluI GCNGC 6 cut(s) 69, 98, 321, 351, 1006, 1009
GsuI CTGGAG 2 cut(s) 1002, 1130
HaeIII GGCC 2 cut(s) 455, 851
HgaI GACGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 280
Hin1II CATG 6 cut(s) 83, 242, 737, 1015, 1030, 1046
HinfI GANTC 9 cut(s) 20, 518, 686, 821, 977, 1095, 1131, 1178, 1268
HphI GGTGA 4 cut(s) 194, 227, 531, 1078
Hpy166II GTNNAC 3 cut(s) 505, 539, 763
Hpy188I TCNGA 4 cut(s) 358, 499, 523, 594
Hpy188III TCNNGA 8 cut(s) 445, 470, 515, 981, 1099, 1128, 1184, 1208
Hpy8I GTNNAC 3 cut(s) 505, 539, 763
HpyAV CCTTC 4 cut(s) 445, 601, 937, 1009
HpyCH4III ACNGT 3 cut(s) 127, 509, 630
HpyCH4IV ACGT 1 cut(s) 1236
HpyCH4V TGCA 8 cut(s) 201, 207, 400, 692, 737, 1011, 1175, 1256
HpyF10VI GCNNNNNNNGC 1 cut(s) 1253
HpyF3I CTNAG 5 cut(s) 64, 144, 496, 522, 543
HpySE526I ACGT 1 cut(s) 1236
Hsp92I GRCGYC 1 cut(s) 280
Hsp92II CATG 6 cut(s) 83, 242, 737, 1015, 1030, 1046
Kzo9I GATC 6 cut(s) 337, 341, 413, 589, 730, 752
LmnI GCTCC 2 cut(s) 831, 883
Lsp1109I GCAGC 4 cut(s) 80, 307, 362, 995
LweI GCATC 5 cut(s) 194, 216, 362, 626, 1201
MaeI CTAG 7 cut(s) 302, 515, 581, 683, 750, 773, 1184
MaeII ACGT 1 cut(s) 1236
MaeIII GTNAC 2 cut(s) 182, 1066
MalI GATC 6 cut(s) 339, 343, 415, 591, 732, 754
MbiI CCGCTC 2 cut(s) 97, 886
MboI GATC 6 cut(s) 337, 341, 413, 589, 730, 752
MboII GAAGA 7 cut(s) 338, 434, 607, 740, 803, 980, 1096
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 1 cut(s) 752
MhlI GDGCHC 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 851
MluCI AATT 3 cut(s) 825, 1223, 1289
MluNI TGGCCA 1 cut(s) 851
MlyI GAGTC 6 cut(s) 527, 830, 986, 1089, 1125, 1187
MmeI TCCRAC 2 cut(s) 369, 1245
Mox20I TGGCCA 1 cut(s) 851
Mph1103I ATGCAT 1 cut(s) 209
MscI TGGCCA 1 cut(s) 851
MseI TTAA 5 cut(s) 33, 249, 564, 843, 893
MslI CAYNNNNRTG 2 cut(s) 637, 1139
Msp20I TGGCCA 1 cut(s) 851
MspA1I CMGCKG 2 cut(s) 650, 1008
MspR9I CCNGG 1 cut(s) 921
MunI CAATTG 1 cut(s) 825
Mva1269I GAATGC 2 cut(s) 556, 1258
MvaI CCWGG 1 cut(s) 921
MwoI GCNNNNNNNGC 1 cut(s) 1253
NcoI CCATGG 1 cut(s) 79
NdeII GATC 6 cut(s) 337, 341, 413, 589, 730, 752
NlaIII CATG 6 cut(s) 83, 242, 737, 1015, 1030, 1046
NmeAIII GCCGAG 1 cut(s) 850
NmuCI GTSAC 2 cut(s) 182, 1066
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 1030
NspV TTCGAA 1 cut(s) 23
PaeI GCATGC 1 cut(s) 1030
PctI GAATGC 2 cut(s) 556, 1258
PfeI GAWTC 3 cut(s) 20, 686, 1268
PflMI CCANNNNNTGG 1 cut(s) 80
PkrI GCNGC 6 cut(s) 70, 99, 322, 352, 1007, 1010
PleI GAGTC 6 cut(s) 526, 829, 985, 1089, 1125, 1186
PpsI GAGTC 6 cut(s) 526, 829, 985, 1089, 1125, 1186
PpuMI RGGWCCY 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 259
Psp5II RGGWCCY 1 cut(s) 838
Psp6I CCWGG 1 cut(s) 919
PspGI CCWGG 1 cut(s) 919
PspPI GGNCC 2 cut(s) 454, 838
PspPPI RGGWCCY 1 cut(s) 838
PstI CTGCAG 1 cut(s) 694
PsuI RGATCY 1 cut(s) 752
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 2 cut(s) 476, 532
RsaNI GTAC 2 cut(s) 475, 531
RseI CAYNNNNRTG 2 cut(s) 637, 1139
SacI GAGCTC 1 cut(s) 259
SaqAI TTAA 5 cut(s) 33, 249, 564, 843, 893
SatI GCNGC 6 cut(s) 69, 98, 321, 351, 1006, 1009
Sau3AI GATC 6 cut(s) 337, 341, 413, 589, 730, 752
Sau96I GGNCC 2 cut(s) 454, 838
ScaI AGTACT 2 cut(s) 476, 532
SchI GAGTC 6 cut(s) 527, 830, 986, 1089, 1125, 1187
ScrFI CCNGG 1 cut(s) 921
SduI GDGCHC 1 cut(s) 259
SfaNI GCATC 5 cut(s) 194, 216, 362, 626, 1201
SfcI CTRYAG 1 cut(s) 690
SfuI TTCGAA 1 cut(s) 23
SinI GGWCC 1 cut(s) 838
SmiMI CAYNNNNRTG 2 cut(s) 637, 1139
SphI GCATGC 1 cut(s) 1030
Sse9I AATT 3 cut(s) 825, 1223, 1289
SsiI CCGC 3 cut(s) 97, 886, 1006
SspMI CTAG 7 cut(s) 302, 515, 581, 683, 750, 773, 1184
SstI GAGCTC 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 919
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 3 cut(s) 127, 509, 630
TaiI ACGT 1 cut(s) 1239
TaqI TCGA 3 cut(s) 23, 340, 726
TasI AATT 3 cut(s) 825, 1223, 1289
TatI WGTACW 2 cut(s) 474, 530
TauI GCSGC 2 cut(s) 100, 1008
TfiI GAWTC 3 cut(s) 20, 686, 1268
Tru1I TTAA 5 cut(s) 33, 249, 564, 843, 893
Tru9I TTAA 5 cut(s) 33, 249, 564, 843, 893
TscAI CASTG 2 cut(s) 812, 1321
TseFI GTSAC 2 cut(s) 182, 1066
TseI GCWGC 4 cut(s) 68, 320, 350, 1008
Tsp45I GTSAC 2 cut(s) 182, 1066
TspDTI ATGAA 5 cut(s) 17, 255, 366, 1028, 1157
TspRI CASTG 2 cut(s) 812, 1321
Van91I CCANNNNNTGG 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 838
XbaI TCTAGA 2 cut(s) 514, 1183
XceI RCATGY 1 cut(s) 1030
XspI CTAG 7 cut(s) 302, 515, 581, 683, 750, 773, 1184
ZrmI AGTACT 2 cut(s) 476, 532
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.