FvH4_2g13240

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
11571718 .. 11574630
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13240.t2

Sequence Viewer

Length: 1395 bp
ATGTGCTTTCTGAAGGTGGCGAACCAGAGGAGGAGCTCATCAGGTGACGGCCGGCCGTTTCAAGAACAAAACGACGACGTTGTCCCGGTGGACTATGAGGAAGAAGCTAGGAGAGATCAATTATTGATGAGTAATCAACTGGCAGTAGAAGAAGGCCGTGCGCAACCACATCAGACGTCGACTGTGTCGCCGTCTATGTATTTAGGGTATAGTCGGCCGGCGGCGGAGATGTCGGCGATGGTGTCAGCACTGACGCATGTCGTATCGGGACAGAGACATGTCGTTTCGGGTTCAAGCGGTGGAGTTGCTTCAAGCTTCGGTCAAGTTTATTCTGCTGCTAATGCTAACTCTCCACCTTTGTCAGCTTTCTCTACCTCTAATAATAATAATAATACATCTTCCTCCTCTGGCTCCTGGGTTGGTCAAAAAAGAGGCAGAGAAGAAGAACAGATTCATCAAGCCCTGTTGATGGATCAAAGTACTAGGCCTTATAGAGGTGCCTATGTTGATTTCAGAGCAACTCTGCCGGAATCCTCAACCGGTGCAACAACTACAACAACCGTTAATGAAGATGACACAAAATCTGTCACCACCGCAGCCAGCACCGTCAAGGCAACCGCTTCCACCGCAGTAACAGTAACACCATCAGCTTCTGATACTGTTTCAACAGAAGAAACAGGGGAGAGGAGAAGAAGATACAGGGGAGTCCGGCAGCGGCCGTGGGGAAAATGGGCCGCCGAGATTCGTGACCCACACAAGGCGGCGAGAGTCTGGCTCGGCACATTCGAGACTGCCGAGGCCGCCGCTAGGGCCTACGACGAAGCCGCCTTAAGGTTCAGGGGAAACAGAGCCAAGCTTAACTTCCCTGAAAATGTGAGACTCATACCACCACAGCAACCCCTCCAGAGCTACGCTCAGTCCATCAACTCAAATTCTGCACCAGCTCGTTTGGCGCCAAACCCGTCTGTACGGCCATTGCAGCCACCACCACAGCCATTGCAACAGCAACAACCGCTTTACCAGACTCAATCTTTTCAGGGCTCCCCTGACTTCCTCAGAGACTACATGGACTACTCTCATTTGCTTCAGAGCTCCATCGACGTTCACTCACAGCAACAACCCCAGCCGACGAATCTTCTGGAGCAGATGTACTACAATTCCCAATTAGCTTCACTTCAGTCCTCGCTATTGCAACAGCCACCACCCTCATCGTCCACTTCGTCTTCCACATTGCCCTCCTCTACTTCCTCCTCTGCTTCATTTCCTCTGTTTTTCTCTGATCATCAGCAGCAGCTAAGTTTTTTCGGGCAGCAGAATCAGAATCCGGGCGGTCCATCGGGCTTTCCAGCACCATCTTGGTCACAATCCGGTCACAATCATTCATCTTCCGGCTAA

Protein Analysis

465

Amino Acids

50.54

Weight (kDa)

6.81

Isoelectric Point (pI)

71.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 220 - 269 7.8e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013610)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AatII GACGTC 1 cut(s) 179
Acc16I TGCGCA 1 cut(s) 162
AccB1I GGYRCC 2 cut(s) 497, 952
AccI GTMKAC 1 cut(s) 179
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 5 cut(s) 49, 53, 215, 716, 971
AcsI RAATTY 1 cut(s) 931
AcuI CTGAAG 3 cut(s) 32, 1070, 1160
AcyI GRCGYC 2 cut(s) 176, 953
AfaI GTAC 3 cut(s) 481, 969, 1151
AfiI CCNNNNNNNGG 5 cut(s) 469, 494, 757, 807, 831
AflII CTTAAG 1 cut(s) 829
AflIII ACRYGT 1 cut(s) 277
AgeI ACCGGT 1 cut(s) 539
AgsI TTSAA 4 cut(s) 62, 294, 312, 666
AjnI CCWGG 1 cut(s) 413
AjuI GAANNNNNNNTTGG 2 cut(s) 845, 877
Alw21I GWGCWC 2 cut(s) 38, 1094
Alw26I GTCTC 4 cut(s) 268, 782, 871, 1053
AlwI GGATC 1 cut(s) 480
AlwNI CAGNNNCTG 1 cut(s) 653
ApeKI GCWGC 7 cut(s) 335, 596, 712, 979, 1288, 1291, 1309
ApoI RAATTY 1 cut(s) 931
AsiGI ACCGGT 1 cut(s) 539
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 2 cut(s) 163, 955
AspS9I GGNCC 3 cut(s) 732, 810, 1331
AsuC2I CCSGG 2 cut(s) 86, 1326
AsuHPI GGTGA 2 cut(s) 56, 580
AvaII GGWCC 1 cut(s) 1331
BanI GGYRCC 2 cut(s) 497, 952
BanII GRGCYC 3 cut(s) 38, 1043, 1094
BbsI GAAGAC 1 cut(s) 1215
Bbv12I GWGCWC 2 cut(s) 38, 1094
BbvI GCAGC 7 cut(s) 322, 608, 724, 991, 1300, 1303, 1321
BccI CCATC 7 cut(s) 232, 463, 652, 929, 1103, 1342, 1360
BceAI ACGGC 6 cut(s) 40, 64, 141, 175, 703, 986
BciT130I CCWGG 1 cut(s) 415
BclI TGATCA 1 cut(s) 1279
BcnI CCSGG 2 cut(s) 86, 1326
BcoDI GTCTC 4 cut(s) 268, 782, 871, 1053
BfaI CTAG 3 cut(s) 108, 483, 807
BfoI RGCGCY 1 cut(s) 956
BfrI CTTAAG 1 cut(s) 829
BglI GCCNNNNNGGC 1 cut(s) 809
BmcAI AGTACT 1 cut(s) 481
Bme1390I CCNGG 3 cut(s) 86, 415, 1326
Bme18I GGWCC 1 cut(s) 1331
BmgT120I GGNCC 3 cut(s) 732, 810, 1331
BmiI GGNNCC 4 cut(s) 412, 499, 954, 1042
BmrFI CCNGG 3 cut(s) 86, 415, 1326
BoxI GACNNNNGTC 1 cut(s) 257
BpiI GAAGAC 1 cut(s) 1215
BplI GAGNNNNNCTC 4 cut(s) 759, 791, 898, 930
BpmI CTGGAG 2 cut(s) 887, 1160
BpuMI CCSGG 2 cut(s) 86, 1326
BsaHI GRCGYC 2 cut(s) 176, 953
BsaJI CCNNGG 3 cut(s) 414, 719, 795
BsaWI WCCGGW 2 cut(s) 539, 1367
BsaXI ACNNNNNCTCC 2 cut(s) 1133, 1163
Bsc4I CCNNNNNNNGG 5 cut(s) 469, 494, 757, 807, 831
Bse118I RCCGGY 3 cut(s) 51, 217, 539
Bse1I ACTGG 1 cut(s) 144
Bse3DI GCAATG 3 cut(s) 974, 995, 1229
BseBI CCWGG 1 cut(s) 415
BseDI CCNNGG 3 cut(s) 414, 719, 795
BseLI CCNNNNNNNGG 5 cut(s) 469, 494, 757, 807, 831
BseMI GCAATG 3 cut(s) 974, 995, 1229
BseMII CTCAG 2 cut(s) 929, 1069
BseNI ACTGG 1 cut(s) 144
BseRI GAGGAG 6 cut(s) 43, 46, 394, 700, 1228, 1240
BseX3I CGGCCG 4 cut(s) 49, 53, 215, 716
BseXI GCAGC 7 cut(s) 322, 608, 724, 991, 1300, 1303, 1321
BseYI CCCAGC 1 cut(s) 1122
BsgI GTGCAG 1 cut(s) 921
Bsh1285I CGRYCG 4 cut(s) 52, 56, 218, 719
BshNI GGYRCC 2 cut(s) 497, 952
BshTI ACCGGT 1 cut(s) 539
BsiEI CGRYCG 4 cut(s) 52, 56, 218, 719
BsiHKAI GWGCWC 2 cut(s) 38, 1094
BsiSI CCGG 9 cut(s) 52, 86, 218, 527, 540, 709, 1325, 1368, 1389
BslFI GGGAC 2 cut(s) 68, 282
BslI CCNNNNNNNGG 5 cut(s) 469, 494, 757, 807, 831
BsmAI GTCTC 4 cut(s) 268, 782, 871, 1053
BsmFI GGGAC 2 cut(s) 68, 282
Bsp1286I GDGCHC 3 cut(s) 38, 1043, 1094
Bsp143I GATC 3 cut(s) 115, 472, 1279
BspCNI CTCAG 2 cut(s) 928, 1068
BspLI GGNNCC 4 cut(s) 412, 499, 954, 1042
BspPI GGATC 1 cut(s) 480
BspT107I GGYRCC 2 cut(s) 497, 952
BspTI CTTAAG 1 cut(s) 829
BsrDI GCAATG 3 cut(s) 974, 995, 1229
BsrFI RCCGGY 3 cut(s) 51, 217, 539
BsrI ACTGG 1 cut(s) 144
BssAI RCCGGY 3 cut(s) 51, 217, 539
BssECI CCNNGG 3 cut(s) 414, 719, 795
BssMI GATC 3 cut(s) 115, 472, 1279
BssNI GRCGYC 2 cut(s) 176, 953
Bst2UI CCWGG 1 cut(s) 415
Bst4CI ACNGT 5 cut(s) 184, 562, 607, 637, 661
BstACI GRCGYC 2 cut(s) 176, 953
BstAFI CTTAAG 1 cut(s) 829
BstC8I GCNNGC 3 cut(s) 53, 219, 601
BstDEI CTNAG 3 cut(s) 915, 1055, 1295
BstDSI CCRYGG 1 cut(s) 719
BstENI CCTNNNNNAGG 1 cut(s) 492
BstH2I RGCGCY 1 cut(s) 956
BstHHI GCGC 2 cut(s) 163, 955
BstKTI GATC 3 cut(s) 118, 475, 1282
BstMAI GTCTC 4 cut(s) 268, 782, 871, 1053
BstMBI GATC 3 cut(s) 115, 472, 1279
BstMCI CGRYCG 4 cut(s) 52, 56, 218, 719
BstMWI GCNNNNNNNGC 7 cut(s) 341, 626, 800, 809, 950, 979, 1012
BstNI CCWGG 1 cut(s) 415
BstNSI RCATGY 2 cut(s) 260, 281
BstPAI GACNNNNGTC 1 cut(s) 257
BstSCI CCNGG 3 cut(s) 84, 413, 1324
BstV1I GCAGC 7 cut(s) 322, 608, 724, 991, 1300, 1303, 1321
BstV2I GAAGAC 1 cut(s) 1215
BstZI CGGCCG 4 cut(s) 49, 53, 215, 716
BtgI CCRYGG 1 cut(s) 719
BtgZI GCGATG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 3 cut(s) 53, 219, 601
CaiI CAGNNNCTG 1 cut(s) 653
CfoI GCGC 2 cut(s) 163, 955
Cfr10I RCCGGY 3 cut(s) 51, 217, 539
Cfr13I GGNCC 3 cut(s) 732, 810, 1331
CseI GACGC 1 cut(s) 262
Csp6I GTAC 3 cut(s) 480, 968, 1150
CspAI ACCGGT 1 cut(s) 539
CspCI CAANNNNNGTGG 2 cut(s) 978, 1013
CviAII CATG 3 cut(s) 257, 278, 1066
CviQI GTAC 3 cut(s) 480, 968, 1150
DdeI CTNAG 3 cut(s) 915, 1055, 1295
DinI GGCGCC 1 cut(s) 954
DpnI GATC 3 cut(s) 117, 474, 1281
DpnII GATC 3 cut(s) 115, 472, 1279
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 5 cut(s) 49, 53, 215, 716, 971
EagI CGGCCG 4 cut(s) 49, 53, 215, 716
EciI GGCGGA 1 cut(s) 239
Ecl136II GAGCTC 2 cut(s) 36, 1092
EclXI CGGCCG 4 cut(s) 49, 53, 215, 716
Eco147I AGGCCT 1 cut(s) 487
Eco24I GRGCYC 3 cut(s) 38, 1043, 1094
Eco47I GGWCC 1 cut(s) 1331
Eco52I CGGCCG 4 cut(s) 49, 53, 215, 716
Eco53kI GAGCTC 2 cut(s) 36, 1092
Eco57I CTGAAG 3 cut(s) 32, 1070, 1160
EcoICRI GAGCTC 2 cut(s) 36, 1092
EcoNI CCTNNNNNAGG 1 cut(s) 492
EcoO109I RGGNCCY 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 413
EcoT38I GRGCYC 3 cut(s) 38, 1043, 1094
EgeI GGCGCC 1 cut(s) 954
EheI GGCGCC 1 cut(s) 954
FaeI CATG 3 cut(s) 260, 281, 1069
FaiI YATR 9 cut(s) 96, 197, 210, 258, 279, 492, 504, 884, 1067
FalI AAGNNNNNCTT 2 cut(s) 845, 877
FaqI GGGAC 2 cut(s) 68, 282
FatI CATG 3 cut(s) 256, 277, 1065
FbaI TGATCA 1 cut(s) 1279
FblI GTMKAC 1 cut(s) 179
FriOI GRGCYC 3 cut(s) 38, 1043, 1094
FseI GGCCGGCC 1 cut(s) 55
FspBI CTAG 3 cut(s) 108, 483, 807
FspI TGCGCA 1 cut(s) 162
GlaI GCGC 2 cut(s) 162, 954
GsaI CCCAGC 1 cut(s) 1126
GsuI CTGGAG 2 cut(s) 887, 1160
HaeII RGCGCY 1 cut(s) 956
HapII CCGG 9 cut(s) 52, 86, 218, 527, 540, 709, 1325, 1368, 1389
HgaI GACGC 1 cut(s) 262
HhaI GCGC 2 cut(s) 163, 955
Hin1I GRCGYC 2 cut(s) 176, 953
Hin1II CATG 3 cut(s) 260, 281, 1069
Hin6I GCGC 2 cut(s) 161, 953
HinP1I GCGC 2 cut(s) 161, 953
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HindIII AAGCTT 2 cut(s) 313, 854
HpaII CCGG 9 cut(s) 52, 86, 218, 527, 540, 709, 1325, 1368, 1389
HphI GGTGA 2 cut(s) 56, 580
Hpy166II GTNNAC 4 cut(s) 91, 180, 1105, 1215
Hpy188I TCNGA 8 cut(s) 12, 174, 515, 655, 1058, 1089, 1279, 1320
Hpy188III TCNNGA 6 cut(s) 62, 267, 746, 787, 904, 1139
Hpy8I GTNNAC 4 cut(s) 91, 180, 1105, 1215
Hpy99I CGWCG 6 cut(s) 77, 80, 181, 821, 1103, 1132
HpyAV CCTTC 2 cut(s) 7, 146
HpyCH4III ACNGT 5 cut(s) 184, 562, 607, 637, 661
HpyCH4IV ACGT 3 cut(s) 78, 176, 1101
HpyCH4V TGCA 5 cut(s) 545, 938, 979, 1000, 1192
HpyF10VI GCNNNNNNNGC 7 cut(s) 341, 626, 800, 809, 950, 979, 1012
HpyF3I CTNAG 3 cut(s) 915, 1055, 1295
HpySE526I ACGT 3 cut(s) 78, 176, 1101
Hsp92I GRCGYC 2 cut(s) 176, 953
Hsp92II CATG 3 cut(s) 260, 281, 1069
HspAI GCGC 2 cut(s) 161, 953
KasI GGCGCC 1 cut(s) 952
KroI GCCGGC 2 cut(s) 51, 217
KroNI GCCGGC 2 cut(s) 53, 219
Ksp22I TGATCA 1 cut(s) 1279
Kzo9I GATC 3 cut(s) 115, 472, 1279
LmnI GCTCC 5 cut(s) 33, 416, 1046, 1097, 1141
Lsp1109I GCAGC 7 cut(s) 322, 608, 724, 991, 1300, 1303, 1321
MaeI CTAG 3 cut(s) 108, 483, 807
MaeII ACGT 3 cut(s) 78, 176, 1101
MaeIII GTNAC 7 cut(s) 44, 586, 631, 637, 746, 1359, 1370
MalI GATC 3 cut(s) 117, 474, 1281
MboI GATC 3 cut(s) 115, 472, 1279
MhlI GDGCHC 3 cut(s) 38, 1043, 1094
MluCI AATT 4 cut(s) 119, 931, 1156, 1163
Mly113I GGCGCC 1 cut(s) 953
MlyI GAGTC 4 cut(s) 714, 777, 873, 1018
MroNI GCCGGC 2 cut(s) 51, 217
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 3 cut(s) 564, 830, 858
MspA1I CMGCKG 1 cut(s) 715
MspCI CTTAAG 1 cut(s) 829
MspI CCGG 9 cut(s) 52, 86, 218, 527, 540, 709, 1325, 1368, 1389
MspR9I CCNGG 3 cut(s) 86, 415, 1326
MvaI CCWGG 1 cut(s) 415
MwoI GCNNNNNNNGC 7 cut(s) 341, 626, 800, 809, 950, 979, 1012
NaeI GCCGGC 2 cut(s) 53, 219
NarI GGCGCC 1 cut(s) 953
NciI CCSGG 2 cut(s) 86, 1326
NdeII GATC 3 cut(s) 115, 472, 1279
NgoMIV GCCGGC 2 cut(s) 51, 217
NlaIII CATG 3 cut(s) 260, 281, 1069
NlaIV GGNNCC 4 cut(s) 412, 499, 954, 1042
NmeAIII GCCGAG 3 cut(s) 756, 763, 820
NmuCI GTSAC 5 cut(s) 44, 586, 746, 1359, 1370
NsbI TGCGCA 1 cut(s) 162
NspI RCATGY 2 cut(s) 260, 281
PceI AGGCCT 1 cut(s) 487
PciI ACATGT 1 cut(s) 277
PcsI WCGNNNNNNNCGW 3 cut(s) 783, 792, 1217
PdiI GCCGGC 2 cut(s) 53, 219
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 6 cut(s) 451, 530, 742, 1132, 1315, 1321
PflFI GACNNNGTC 2 cut(s) 80, 184
PinAI ACCGGT 1 cut(s) 539
PleI GAGTC 4 cut(s) 713, 776, 873, 1018
PluTI GGCGCC 1 cut(s) 956
PpsI GAGTC 4 cut(s) 713, 776, 873, 1018
PscI ACATGT 1 cut(s) 277
PshAI GACNNNNGTC 1 cut(s) 257
Psp124BI GAGCTC 2 cut(s) 38, 1094
Psp6I CCWGG 1 cut(s) 413
PspFI CCCAGC 1 cut(s) 1122
PspGI CCWGG 1 cut(s) 413
PspN4I GGNNCC 4 cut(s) 412, 499, 954, 1042
PspPI GGNCC 3 cut(s) 732, 810, 1331
PstNI CAGNNNCTG 1 cut(s) 653
PsyI GACNNNGTC 2 cut(s) 80, 184
RigI GGCCGGCC 1 cut(s) 55
RsaI GTAC 3 cut(s) 481, 969, 1151
RsaNI GTAC 3 cut(s) 480, 968, 1150
SacI GAGCTC 2 cut(s) 38, 1094
SalI GTCGAC 1 cut(s) 178
SaqAI TTAA 3 cut(s) 564, 830, 858
Sau3AI GATC 3 cut(s) 115, 472, 1279
Sau96I GGNCC 3 cut(s) 732, 810, 1331
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 4 cut(s) 714, 777, 873, 1018
ScrFI CCNGG 3 cut(s) 86, 415, 1326
SduI GDGCHC 3 cut(s) 38, 1043, 1094
SfoI GGCGCC 1 cut(s) 954
SinI GGWCC 1 cut(s) 1331
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
Sse9I AATT 4 cut(s) 119, 931, 1156, 1163
SseBI AGGCCT 1 cut(s) 487
SspDI GGCGCC 1 cut(s) 952
SspMI CTAG 3 cut(s) 108, 483, 807
SstI GAGCTC 2 cut(s) 38, 1094
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 3 cut(s) 84, 413, 1324
TaaI ACNGT 5 cut(s) 184, 562, 607, 637, 661
TaiI ACGT 3 cut(s) 81, 179, 1104
TaqI TCGA 3 cut(s) 179, 786, 1098
TaqII GACCGA 1 cut(s) 308
TasI AATT 4 cut(s) 119, 931, 1156, 1163
TatI WGTACW 2 cut(s) 479, 1149
TauI GCSGC 7 cut(s) 224, 718, 737, 764, 803, 806, 827
TfiI GAWTC 6 cut(s) 451, 530, 742, 1132, 1315, 1321
Tru1I TTAA 3 cut(s) 564, 830, 858
Tru9I TTAA 3 cut(s) 564, 830, 858
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 5 cut(s) 44, 586, 746, 1359, 1370
TseI GCWGC 7 cut(s) 335, 596, 712, 979, 1288, 1291, 1309
Tsp45I GTSAC 5 cut(s) 44, 586, 746, 1359, 1370
TspDTI ATGAA 4 cut(s) 443, 582, 1248, 1371
TspRI CASTG 1 cut(s) 255
Tth111I GACNNNGTC 2 cut(s) 80, 184
Vha464I CTTAAG 1 cut(s) 829
VpaK11BI GGWCC 1 cut(s) 1331
XagI CCTNNNNNAGG 1 cut(s) 492
XapI RAATTY 1 cut(s) 931
XceI RCATGY 2 cut(s) 260, 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 1353
XmiI GTMKAC 1 cut(s) 179
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 3 cut(s) 108, 483, 807
ZraI GACGTC 1 cut(s) 177
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.