Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013610

Physical Location & Seq

Genomic Coordinates Forward (+)

2512897 .. 2514690

Gene Structure 1794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g02190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGTTTTTGGGGTACAGTCGGGCGGCAACGGAGATGTCGGCGATGGTATCGGCTTTGACGCATGTCGTTTCCGGACAAAGAGGCAGCGACAGCTGGGGACATATTGGAAGCGGTGGAGTTACGTCTAGTTTCGGCCAACTGTATTCTTCTTCATTTCCATCTGCTTCTCCTTTGTCAGCTGCTTTTTCTTCAACTGCTTCTCCTGCTTCTAACAATTGGGTCGGTCAAAAGAGAGGGCGCGAAGAAGATTTGGATTCTGCTTCTGCCCTTGCTCAAACCCAATTCATGGAATCTGGTAATAGAGCTTTTAGGGGTGGCTATAGTGATTACAGAGGAACACAATCAGACTCTCCATCTGGTGGTGCAAGTGCAACTGTGACAGAAGAAAGTACAAATTTTTCCACCGCCCCCACCACCGCCACCGTCTCGGTCACCACAGCGTTACCAACCACACCATCAAGTACAGAATCTGTTTCATTTGAAGAAACTGGTGAGAGGAAGAGAAGATACAGGGGAGTTAGACAGAGGCCGTGGGGAAAATGGGCAGCTGAAATACGCGATCCACACAGAGCTGCAAGAGTCTGGCTTGGCACATTCGACACGGCGGAGGCCGCCGCCCGAGCCTACGATGAAGCTGCTCTAAGATTCAGAGGAAACAGAGCTAAACTAAACTTCCCAGAAAACGTCAGACTCGTTCAACCACCACCACCGCCACCACCAACTCTCCAAACCTTCAATTCAAATTCTAGACCAACACAATATGCTCAGCCGTTGCAGCCGCCGCTGCCGCTTCCACAACCACCACAACAGCAACTCTATCACTCCCAGCAAGCTTTTCAGCCCTCCTCCGACCTCCTCCGGGATTACTTCGACTACTCTCAGCTCCTTCAAAGCTCCGCTGACTTCCATCCACAGCAGCAACATCAACAGCAGCCCTCAAGTTTGCTGCAACAAATGTACTACAATTCCCAGTTGGCATCACTTCAATCTTCTATTCTACAACCTGCATCGTCAACCACTCCATCTTCTGCATTGCCGTCCTCTGCCTCCTCCTCTGCTTCATTTCCTCTGTTTTTCTCTGAGCAGAATCAACAACTGGGTTTTTTCCGGCAGCCGCAGAATCCGAACCAGGGTGGTTCGTCTGATTTCCAGGCACCATCTTGGTCTCATTCCGGCAACGATCCATCCTCATCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034284 GO:0040034 GO:0042221 GO:0043207 GO:0045893 GO:0045935 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

400

Amino Acids

43.24

Weight (kDa)

6.67

Isoelectric Point (pI)

68.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	169 - 218	1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13240 FvH4_2g13240
malus_domestica	MD05G1030800.v1.1 MD10G1032000.v1.1
prunus_persica	Prupe.8G037900_v2.0.a1
pyrus_communis	pycom05g02190 pycom10g02050
rosa_chinensis	RchiOBHm_Chr6g0274591
rosa_laevigata	RLG00000013534
rosa_multiflora	Rmu_sc0006850.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194100
rosa_rugosa	Rorug06G0082400 Rorug06G0082500
rosa_samantha	Rh6AG198800 Rh6BG202000 Rh6CG202700 Rh6DG193800
rosa_wichuraiana	Rw6G017280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1012
AccB1I	GGYRCC	1 cut(s)	1153
AccB7I	CCANNNNNTGG	2 cut(s)	286, 359
AccII	CGCG	2 cut(s)	240, 558
AccIII	TCCGGA	1 cut(s)	71
AclWI	GGATC	2 cut(s)	554, 1175
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	394, 742
AfaI	GTAC	4 cut(s)	14, 391, 463, 959
AfiI	CCNNNNNNNGG	4 cut(s)	286, 359, 859, 1130
AgsI	TTSAA	7 cut(s)	192, 482, 698, 736, 741, 890, 986
AjnI	CCWGG	2 cut(s)	1128, 1149
Alw26I	GTCTC	2 cut(s)	430, 1170
AlwI	GGATC	2 cut(s)	554, 1175
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	618
Aor13HI	TCCGGA	1 cut(s)	71
AoxI	GGCC	3 cut(s)	133, 527, 609
ApoI	RAATTY	2 cut(s)	394, 742
AspLEI	GCGC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	860
AsuHPI	GGTGA	2 cut(s)	424, 503
AvaI	CYCGRG	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	1153
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
BccI	CCATC	8 cut(s)	37, 166, 361, 463, 915, 1030, 1165, 1192
BceAI	ACGGC	4 cut(s)	514, 618, 754, 1021
BcgI	CGANNNNNNTGC	2 cut(s)	617, 651
BciT130I	CCWGG	2 cut(s)	1130, 1151
BcnI	CCSGG	1 cut(s)	860
BcoDI	GTCTC	2 cut(s)	430, 1170
BfaI	CTAG	2 cut(s)	126, 747
BfmI	CTRYAG	1 cut(s)	319
BfuAI	ACCTGC	1 cut(s)	1012
BlpI	GCTNAGC	1 cut(s)	765
Bme1390I	CCNGG	3 cut(s)	860, 1130, 1151
BmeT110I	CYCGRG	1 cut(s)	618
BmiI	GGNNCC	1 cut(s)	1155
BmrFI	CCNGG	3 cut(s)	860, 1130, 1151
BmrI	ACTGGG	2 cut(s)	964, 1106
BmsI	GCATC	2 cut(s)	986, 1016
BmuI	ACTGGG	2 cut(s)	964, 1106
BoxI	GACNNNNGTC	1 cut(s)	62
Bpu1102I	GCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	922
BpuMI	CCSGG	1 cut(s)	860
BsaI	GGTCTC	1 cut(s)	1170
BsaJI	CCNNGG	2 cut(s)	530, 1129
BsaWI	WCCGGW	1 cut(s)	71
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 708, 738
Bsc4I	CCNNNNNNNGG	4 cut(s)	286, 359, 859, 1130
Bse1I	ACTGG	4 cut(s)	493, 970, 1101, 1194
Bse3DI	GCAATG	1 cut(s)	1031
BseAI	TCCGGA	1 cut(s)	71
BseBI	CCWGG	2 cut(s)	1130, 1151
BseDI	CCNNGG	2 cut(s)	530, 1129
BseGI	GGATG	3 cut(s)	907, 1184, 1190
BseLI	CCNNNNNNNGG	4 cut(s)	286, 359, 859, 1130
BseMI	GCAATG	1 cut(s)	1031
BseMII	CTCAG	3 cut(s)	779, 893, 1071
BseNI	ACTGG	4 cut(s)	493, 970, 1101, 1194
BseRI	GAGGAG	4 cut(s)	835, 845, 1039, 1042
BseYI	CCCAGC	2 cut(s)	93, 825
Bsh1236I	CGCG	2 cut(s)	240, 558
BshFI	GGCC	3 cut(s)	135, 529, 611
BshNI	GGYRCC	1 cut(s)	1153
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	4 cut(s)	72, 859, 1108, 1173
BslFI	GGGAC	1 cut(s)	111
BslI	CCNNNNNNNGG	4 cut(s)	286, 359, 859, 1130
BsmAI	GTCTC	2 cut(s)	430, 1170
BsmBI	CGTCTC	1 cut(s)	430
BsmFI	GGGAC	1 cut(s)	111
BsnI	GGCC	3 cut(s)	135, 529, 611
Bso31I	GGTCTC	1 cut(s)	1170
BsoBI	CYCGRG	1 cut(s)	618
Bsp13I	TCCGGA	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	559, 1180
Bsp1720I	GCTNAGC	1 cut(s)	765
BspANI	GGCC	3 cut(s)	135, 529, 611
BspCNI	CTCAG	3 cut(s)	778, 892, 1072
BspEI	TCCGGA	1 cut(s)	71
BspFNI	CGCG	2 cut(s)	240, 558
BspLI	GGNNCC	1 cut(s)	1155
BspMI	ACCTGC	1 cut(s)	1012
BspPI	GGATC	2 cut(s)	554, 1175
BspT107I	GGYRCC	1 cut(s)	1153
BspTNI	GGTCTC	1 cut(s)	1170
BsrDI	GCAATG	1 cut(s)	1031
BsrI	ACTGG	4 cut(s)	493, 970, 1101, 1194
BssECI	CCNNGG	2 cut(s)	530, 1129
BssMI	GATC	2 cut(s)	559, 1180
Bst2UI	CCWGG	2 cut(s)	1130, 1151
Bst4CI	ACNGT	4 cut(s)	17, 141, 376, 424
Bst6I	CTCTTC	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	831
BstDEI	CTNAG	4 cut(s)	641, 765, 879, 1080
BstDSI	CCRYGG	1 cut(s)	530
BstEII	GGTNACC	1 cut(s)	430
BstF5I	GGATG	3 cut(s)	907, 1184, 1190
BstFNI	CGCG	2 cut(s)	240, 558
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	562, 1183
BstMAI	GTCTC	2 cut(s)	430, 1170
BstMBI	GATC	2 cut(s)	559, 1180
BstMWI	GCNNNNNNNGC	8 cut(s)	90, 203, 611, 620, 775, 781, 784, 787
BstNI	CCWGG	2 cut(s)	1130, 1151
BstNSI	RCATGY	1 cut(s)	65
BstPAI	GACNNNNGTC	1 cut(s)	62
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	3 cut(s)	858, 1128, 1149
BstSFI	CTRYAG	1 cut(s)	319
BstUI	CGCG	2 cut(s)	240, 558
BsuRI	GGCC	3 cut(s)	135, 529, 611
BtgI	CCRYGG	1 cut(s)	530
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	3 cut(s)	907, 1184, 1190
BveI	ACCTGC	1 cut(s)	1012
Cac8I	GCNNGC	1 cut(s)	831
CaiI	CAGNNNCTG	1 cut(s)	470
CfoI	GCGC	1 cut(s)	240
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	4 cut(s)	13, 390, 462, 958
CviAII	CATG	2 cut(s)	62, 286
CviQI	GTAC	4 cut(s)	13, 390, 462, 958
DdeI	CTNAG	4 cut(s)	641, 765, 879, 1080
DpnI	GATC	2 cut(s)	561, 1182
DpnII	GATC	2 cut(s)	559, 1180
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
EciI	GGCGGA	1 cut(s)	620
Eco31I	GGTCTC	1 cut(s)	1170
Eco88I	CYCGRG	1 cut(s)	618
Eco91I	GGTNACC	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	1128, 1149
Esp3I	CGTCTC	1 cut(s)	430
FaeI	CATG	2 cut(s)	65, 289
FaiI	YATR	5 cut(s)	63, 102, 287, 321, 762
FaqI	GGGAC	1 cut(s)	111
FatI	CATG	2 cut(s)	61, 285
FokI	GGATG	3 cut(s)	894, 1171, 1177
FspBI	CTAG	2 cut(s)	126, 747
GlaI	GCGC	1 cut(s)	239
GsaI	CCCAGC	2 cut(s)	97, 829
HaeIII	GGCC	3 cut(s)	135, 529, 611
HapII	CCGG	4 cut(s)	72, 859, 1108, 1173
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	2 cut(s)	65, 289
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	1014
HindII	GTYRAC	1 cut(s)	1014
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	9 cut(s)	254, 290, 347, 467, 579, 645, 690, 1087, 1120
HpaII	CCGG	4 cut(s)	72, 859, 1108, 1173
HphI	GGTGA	2 cut(s)	424, 503
Hpy166II	GTNNAC	1 cut(s)	1014
Hpy188I	TCNGA	7 cut(s)	346, 650, 689, 850, 1081, 1125, 1144
Hpy188III	TCNNGA	2 cut(s)	72, 747
Hpy8I	GTNNAC	1 cut(s)	1014
HpyAV	CCTTC	2 cut(s)	742, 896
HpyCH4III	ACNGT	4 cut(s)	17, 141, 376, 424
HpyCH4IV	ACGT	2 cut(s)	122, 684
HpyCH4V	TGCA	7 cut(s)	365, 371, 575, 775, 949, 1007, 1031
HpyF10VI	GCNNNNNNNGC	8 cut(s)	90, 203, 611, 620, 775, 781, 784, 787
HpyF3I	CTNAG	4 cut(s)	641, 765, 879, 1080
HpySE526I	ACGT	2 cut(s)	122, 684
Hsp92II	CATG	2 cut(s)	65, 289
HspAI	GCGC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	559, 1180
LmnI	GCTCC	2 cut(s)	888, 899
LweI	GCATC	2 cut(s)	986, 1016
MaeI	CTAG	2 cut(s)	126, 747
MaeII	ACGT	2 cut(s)	122, 684
MaeIII	GTNAC	4 cut(s)	118, 376, 430, 441
MalI	GATC	2 cut(s)	561, 1182
MboI	GATC	2 cut(s)	559, 1180
MfeI	CAATTG	1 cut(s)	214
MluCI	AATT	6 cut(s)	214, 281, 394, 736, 742, 964
MlyI	GAGTC	3 cut(s)	341, 588, 684
MmeI	TCCRAC	1 cut(s)	873
MroI	TCCGGA	1 cut(s)	71
MspA1I	CMGCKG	5 cut(s)	93, 179, 548, 784, 899
MspI	CCGG	4 cut(s)	72, 859, 1108, 1173
MspR9I	CCNGG	3 cut(s)	860, 1130, 1151
MunI	CAATTG	1 cut(s)	214
MvaI	CCWGG	2 cut(s)	1130, 1151
MvnI	CGCG	2 cut(s)	240, 558
MwoI	GCNNNNNNNGC	8 cut(s)	90, 203, 611, 620, 775, 781, 784, 787
NciI	CCSGG	1 cut(s)	860
NdeII	GATC	2 cut(s)	559, 1180
NlaIII	CATG	2 cut(s)	65, 289
NlaIV	GGNNCC	1 cut(s)	1155
NmuCI	GTSAC	2 cut(s)	376, 430
NspI	RCATGY	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	690
PfeI	GAWTC	6 cut(s)	254, 290, 467, 645, 1087, 1120
PflMI	CCANNNNNTGG	2 cut(s)	286, 359
PfoI	TCCNGGA	1 cut(s)	858
PleI	GAGTC	3 cut(s)	341, 587, 684
PpsI	GAGTC	3 cut(s)	341, 587, 684
PshAI	GACNNNNGTC	1 cut(s)	62
Psp6I	CCWGG	2 cut(s)	1128, 1149
PspEI	GGTNACC	1 cut(s)	430
PspFI	CCCAGC	2 cut(s)	93, 825
PspGI	CCWGG	2 cut(s)	1128, 1149
PspN4I	GGNNCC	1 cut(s)	1155
PstNI	CAGNNNCTG	1 cut(s)	470
PvuII	CAGCTG	3 cut(s)	93, 179, 548
RsaI	GTAC	4 cut(s)	14, 391, 463, 959
RsaNI	GTAC	4 cut(s)	13, 390, 462, 958
Sau3AI	GATC	2 cut(s)	559, 1180
SchI	GAGTC	3 cut(s)	341, 588, 684
ScrFI	CCNGG	3 cut(s)	860, 1130, 1151
SfaNI	GCATC	2 cut(s)	986, 1016
SfcI	CTRYAG	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	937
SmoI	CTYRAG	1 cut(s)	937
Sse9I	AATT	6 cut(s)	214, 281, 394, 736, 742, 964
SspMI	CTAG	2 cut(s)	126, 747
StyD4I	CCNGG	3 cut(s)	858, 1128, 1149
TaaI	ACNGT	4 cut(s)	17, 141, 376, 424
TaiI	ACGT	2 cut(s)	125, 687
TaqI	TCGA	2 cut(s)	597, 870
TaqII	GACCGA	2 cut(s)	212, 418
TasI	AATT	6 cut(s)	214, 281, 394, 736, 742, 964
TatI	WGTACW	3 cut(s)	389, 461, 957
TauI	GCSGC	7 cut(s)	26, 614, 617, 781, 784, 790, 1117
TfiI	GAWTC	6 cut(s)	254, 290, 467, 645, 1087, 1120
TseFI	GTSAC	2 cut(s)	376, 430
Tsp45I	GTSAC	2 cut(s)	376, 430
TspDTI	ATGAA	5 cut(s)	141, 274, 465, 645, 1050
TspGWI	ACGGA	1 cut(s)	44
Van91I	CCANNNNNTGG	2 cut(s)	286, 359
XapI	RAATTY	2 cut(s)	394, 742
XbaI	TCTAGA	1 cut(s)	746
XceI	RCATGY	1 cut(s)	65
XspI	CTAG	2 cut(s)	126, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.