Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013610

Physical Location & Seq

Genomic Coordinates Reverse (-)

10977315 .. 10982254

Gene Structure 4940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0082500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCTAACGGAGGGATAATACAGCTTAGAGTTGATGGAGTGCTTATGAGATTAAGGGATACCCGTATGCACTGTGCTTTTGGAGATAATGTAAATCCCATTATTCTTCGAGAGAGCTGCTGGAGAGAAGCTAGGTTTCAAGCTTTGGCTGCAAAGGGATACCCTTCTGACGCTGCTGCCTACAATGATCCAAGTATCATCAGCCAAAGGCTTCCTGTGGTCATGAATAAGACCCATAAGCTAAAGAAAGTCATATATGGAATATTCCAAACTGGCGTAGCAGGTGGATGGATCAGAGTCGAAGATTTAAGTCGAGGTTGCATGGCTCTGATTGTGGCTCTAATACTTGTGGATCCAAGCTCCAAGCGGAAGCTGCCTGGCCACATTGAATGCATTACGTCGTCAAGTGTGAAAGGCATCATGCTAAACCTTGTACTGGCATCATTAAATCTTGCTACAAGTGCAGTTTCGTATCTGCTTGGCTTGTGCACAAGTGAATGGGGCTGTACGCCTGTACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034284 GO:0040034 GO:0042221 GO:0043207 GO:0045893 GO:0045935 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

173

Amino Acids

18.86

Weight (kDa)

9.44

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIP41	PF04176	9 - 49	6.7e-07	TIP41-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13240 FvH4_2g13240
malus_domestica	MD05G1030800.v1.1 MD10G1032000.v1.1
prunus_persica	Prupe.8G037900_v2.0.a1
pyrus_communis	pycom05g02190 pycom10g02050
rosa_chinensis	RchiOBHm_Chr6g0274591
rosa_laevigata	RLG00000013534
rosa_multiflora	Rmu_sc0006850.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194100
rosa_rugosa	Rorug06G0082400 Rorug06G0082500
rosa_samantha	Rh6AG198800 Rh6BG202000 Rh6CG202700 Rh6DG193800
rosa_wichuraiana	Rw6G017280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	272
AciI	CCGC	1 cut(s)	367
AclWI	GGATC	4 cut(s)	182, 299, 347, 360
AcoI	YGGCCR	1 cut(s)	379
AfaI	GTAC	3 cut(s)	435, 508, 516
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	2 cut(s)	140, 389
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	7 cut(s)	25, 117, 131, 143, 241, 360, 373
AluI	AGCT	7 cut(s)	25, 117, 131, 143, 241, 360, 373
Alw21I	GWGCWC	1 cut(s)	491
Alw44I	GTGCAC	1 cut(s)	487
AlwI	GGATC	4 cut(s)	182, 299, 347, 360
AoxI	GGCC	1 cut(s)	379
ApaLI	GTGCAC	1 cut(s)	487
ApeKI	GCWGC	5 cut(s)	117, 149, 173, 176, 373
BaeGI	GKGCMC	1 cut(s)	491
BalI	TGGCCA	1 cut(s)	381
BamHI	GGATCC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	5 cut(s)	104, 136, 160, 163, 360
BccI	CCATC	2 cut(s)	29, 282
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BciT130I	CCWGG	1 cut(s)	378
BciVI	GTATCC	2 cut(s)	52, 152
BfaI	CTAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	272
BfuI	GTATCC	2 cut(s)	52, 152
BisI	GCNGC	5 cut(s)	118, 150, 174, 177, 374
BlsI	GCNGC	5 cut(s)	119, 151, 175, 178, 375
Bme1390I	CCNGG	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	2 cut(s)	426, 449
BpmI	CTGGAG	1 cut(s)	142
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	277, 441
BseBI	CCWGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseNI	ACTGG	2 cut(s)	277, 441
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	5 cut(s)	104, 136, 160, 163, 360
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	187, 291, 352
BspACI	CCGC	1 cut(s)	367
BspANI	GGCC	1 cut(s)	381
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	354
BspMI	ACCTGC	1 cut(s)	272
BspPI	GGATC	4 cut(s)	182, 299, 347, 360
BsrI	ACTGG	2 cut(s)	277, 441
BssMI	GATC	3 cut(s)	187, 291, 352
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	293
BstKTI	GATC	3 cut(s)	190, 294, 355
BstMBI	GATC	3 cut(s)	187, 291, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 373, 461
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	5 cut(s)	104, 136, 160, 163, 360
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuI	GTATCC	2 cut(s)	52, 152
BsuRI	GGCC	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	70
BveI	ACCTGC	1 cut(s)	272
CciI	TCATGA	1 cut(s)	222
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	3 cut(s)	434, 507, 515
CviAII	CATG	3 cut(s)	223, 322, 421
CviQI	GTAC	3 cut(s)	434, 507, 515
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	3 cut(s)	189, 293, 354
DpnII	GATC	3 cut(s)	187, 291, 352
EaeI	YGGCCR	1 cut(s)	379
EcoRII	CCWGG	1 cut(s)	376
EcoT22I	ATGCAT	1 cut(s)	395
FaeI	CATG	3 cut(s)	226, 325, 424
FaiI	YATR	9 cut(s)	47, 68, 224, 237, 254, 256, 258, 323, 422
FatI	CATG	3 cut(s)	222, 321, 420
Fnu4HI	GCNGC	5 cut(s)	118, 150, 174, 177, 374
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	5 cut(s)	118, 150, 174, 177, 374
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	5 cut(s)	118, 150, 174, 177, 374
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	381
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	3 cut(s)	226, 325, 424
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	1 cut(s)	297
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	3 cut(s)	169, 296, 330
Hpy188III	TCNNGA	2 cut(s)	110, 223
Hpy8I	GTNNAC	1 cut(s)	489
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	2 cut(s)	398, 517
HpyCH4V	TGCA	6 cut(s)	70, 152, 321, 393, 464, 489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 373, 461
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	2 cut(s)	398, 517
Hsp92II	CATG	3 cut(s)	226, 325, 424
Kzo9I	GATC	3 cut(s)	187, 291, 352
LmnI	GCTCC	1 cut(s)	365
LpnPI	CCDG	7 cut(s)	106, 228, 258, 267, 363, 390, 422
Lsp1109I	GCAGC	5 cut(s)	104, 136, 160, 163, 360
LweI	GCATC	2 cut(s)	426, 449
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	2 cut(s)	398, 517
MalI	GATC	3 cut(s)	189, 293, 354
MboI	GATC	3 cut(s)	187, 291, 352
MboII	GAAGA	2 cut(s)	98, 314
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	491
MlsI	TGGCCA	1 cut(s)	381
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	306
MnlI	CCTC	2 cut(s)	5, 308
Mox20I	TGGCCA	1 cut(s)	381
Mph1103I	ATGCAT	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	3 cut(s)	53, 308, 446
Msp20I	TGGCCA	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	3 cut(s)	149, 373, 461
NdeII	GATC	3 cut(s)	187, 291, 352
NlaIII	CATG	3 cut(s)	226, 325, 424
NlaIV	GGNNCC	1 cut(s)	354
NsiI	ATGCAT	1 cut(s)	395
PagI	TCATGA	1 cut(s)	222
PaqCI	CACCTGC	1 cut(s)	272
PctI	GAATGC	1 cut(s)	395
PkrI	GCNGC	5 cut(s)	119, 151, 175, 178, 375
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	3 cut(s)	435, 508, 516
RsaNI	GTAC	3 cut(s)	434, 507, 515
SaqAI	TTAA	3 cut(s)	53, 308, 446
SatI	GCNGC	5 cut(s)	118, 150, 174, 177, 374
Sau3AI	GATC	3 cut(s)	187, 291, 352
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	2 cut(s)	426, 449
SsiI	CCGC	1 cut(s)	367
SspI	AATATT	1 cut(s)	264
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	2 cut(s)	401, 520
TaqI	TCGA	3 cut(s)	109, 300, 313
TatI	WGTACW	1 cut(s)	433
Tru1I	TTAA	3 cut(s)	53, 308, 446
Tru9I	TTAA	3 cut(s)	53, 308, 446
TscAI	CASTG	1 cut(s)	77
TseI	GCWGC	5 cut(s)	117, 149, 173, 176, 373
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	77
VneI	GTGCAC	1 cut(s)	487
XspI	CTAG	1 cut(s)	132
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.