Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013610

Physical Location & Seq

Genomic Coordinates Forward (+)

2159726 .. 2161595

Gene Structure 1870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g02050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGTGCTTACTGAAGGTGGCGAACCAAAGGAGCTCAGGAGGCGGCGGTCAATACGACAGGTTTGACTCTCCAAACGACGCTAGCGATGTTGATGCAAATATTAATAATATTAACTACGGCGGAGGATTGGAGTTGCCGCCGCCGTATCAACAACAAGAAGGACAACAACATGTTTCGCCTTCGACGCCGACAATGTTTTTGGGGTACGGTCGGGCGGCTACGGAGATGTCGGCGATGGTGTCGGCTTTGACGCATGTCGTTTCGGGACAGAGAGGCAGCGATAGCTGGGGGCATATTGGAGGCGGTGGAGTTACGTCTAGTCTAGGCCAACTTTATTCTTCTGCATCTTCATCTTCTGCTTCTCCTTTGTCAGCTGCTTTTCCTTCAAGTGCTTCTGGTTCTCACTATTGGGTCGGTCAAAAGAGAGGGCGCGAAGAAGATTTTGCTTCTGCTTCTGCTCAAAGCCAATTCATGGAATCTGGTAATAGAGCATTTAGAGGTGGCTATAGGGATTACAGAGGAACACAATCAGAGTCTTCATCTGGTGGTGCAACGGCGACAGAAGAAACTACAAATTTTGCCACCGCCCCCACCACCACGACGGCCACCGTATCTGCTACCACAGCGGTACCAACCACACCATCAAGTGCAGAATCTGTTTCATTTGGAGAAACTGGCGAGAGGAGGAGGAGATACAGGGGAGTTAGACAGAGGCCGTGGGGTAAATGGGCAGCTGAGATACGCGATCCACACAAAGCTGCAAGAGTCTGGCTCGGCACATTCGACACGGCAGAAGCCGCCGCCCGAGCCTATGATGAAGCTGCTCTAAGATTCAGAGGAAACAGAGCTAAATTAAACTTCCCAGAAAACGTCAGACTCATCCAACCACCAGCAGCTGTCCAAACATTCAATTCAAATTCTAGACCAACACAATCAGCTCAGCCATTGCAGCCGCCGCCTCCGCCGCCACAACCGCCACAACAGCAACTCTATCACCCTCAGCAAGCTTTTCATCCCTCCTCTGACCCCATCCGAGATTACTTTGACTACTCTCAGCTCCTTCAAAACTCCGCCGACTCAAATTTACTGGAACAGATGTACTACTACAATTCCCAATTGGCGTCACTTCAATCTTCTTTGCTACAACCTACAACGTCATCCACTCCATCTTCTGCATTGCCGTCCTCGGCCTCCTCTTCTTCATTTCCTCTGTTTTTCTCTGAGCAGAATCAGCAACAGGGTTTTTTCCTGCAGCCACAGGATCCGAATCAGGGCGGTTCGTCTGATTTCCAGGCACCATCTTGGTCACATTCCAGCAACAATCCATCCTCATCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034284 GO:0040034 GO:0042221 GO:0043207 GO:0045893 GO:0045935 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

447

Amino Acids

47.88

Weight (kDa)

6.08

Isoelectric Point (pI)

68.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	231 - 280	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13240 FvH4_2g13240
malus_domestica	MD05G1030800.v1.1 MD10G1032000.v1.1
prunus_persica	Prupe.8G037900_v2.0.a1
pyrus_communis	pycom05g02190 pycom10g02050
rosa_chinensis	RchiOBHm_Chr6g0274591
rosa_laevigata	RLG00000013534
rosa_multiflora	Rmu_sc0006850.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194100
rosa_rugosa	Rorug06G0082400 Rorug06G0082500
rosa_samantha	Rh6AG198800 Rh6BG202000 Rh6CG202700 Rh6DG193800
rosa_wichuraiana	Rw6G017280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	628
AccB1I	GGYRCC	2 cut(s)	628, 1294
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccII	CGCG	2 cut(s)	432, 744
AclWI	GGATC	3 cut(s)	740, 1256, 1269
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	3 cut(s)	574, 916, 1081
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	2 cut(s)	185, 1121
AfaI	GTAC	3 cut(s)	206, 630, 1100
AfiI	CCNNNNNNNGG	2 cut(s)	472, 1271
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	5 cut(s)	387, 910, 915, 1064, 1130
AjnI	CCWGG	1 cut(s)	1290
Alw21I	GWGCWC	1 cut(s)	35
AlwI	GGATC	3 cut(s)	740, 1256, 1269
AlwNI	CAGNNNCTG	2 cut(s)	656, 896
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	4 cut(s)	325, 603, 713, 1188
ApeKI	GCWGC	8 cut(s)	276, 374, 731, 758, 821, 893, 949, 1252
ApoI	RAATTY	3 cut(s)	574, 916, 1081
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
AseI	ATTAAT	1 cut(s)	102
Asp718I	GGTACC	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	986
AsuNHI	GCTAGC	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	804
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BamHI	GGATCC	1 cut(s)	1261
BanI	GGYRCC	2 cut(s)	628, 1294
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	35
BbvCI	CCTCAGC	1 cut(s)	999
BbvI	GCAGC	8 cut(s)	288, 361, 743, 745, 808, 905, 961, 1264
BccI	CCATC	6 cut(s)	229, 649, 1037, 1174, 1306, 1333
BceAI	ACGGC	7 cut(s)	127, 133, 570, 618, 700, 804, 1165
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	1292
BfaI	CTAG	4 cut(s)	81, 318, 323, 921
BfmI	CTRYAG	2 cut(s)	505, 1250
BlpI	GCTNAGC	1 cut(s)	939
Bme1390I	CCNGG	1 cut(s)	1292
BmeT110I	CYCGRG	1 cut(s)	804
BmiI	GGNNCC	3 cut(s)	630, 1263, 1296
BmrFI	CCNGG	1 cut(s)	1292
BmsI	GCATC	2 cut(s)	82, 353
BmtI	GCTAGC	1 cut(s)	84
BoxI	GACNNNNGTC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	528
BplI	GAGNNNNNCTC	2 cut(s)	756, 788
Bpu10I	CCTNAGC	2 cut(s)	34, 999
Bpu1102I	GCTNAGC	1 cut(s)	939
BsaBI	GATNNNNATC	1 cut(s)	1266
BsaHI	GRCGYC	2 cut(s)	185, 1121
BsaJI	CCNNGG	2 cut(s)	716, 1185
BsaWI	WCCGGW	1 cut(s)	1334
Bsc4I	CCNNNNNNNGG	2 cut(s)	472, 1271
Bse1I	ACTGG	2 cut(s)	679, 1092
Bse3DI	GCAATG	2 cut(s)	944, 1175
Bse8I	GATNNNNATC	1 cut(s)	1266
BseBI	CCWGG	1 cut(s)	1292
BseDI	CCNNGG	2 cut(s)	716, 1185
BseGI	GGATG	6 cut(s)	879, 1012, 1029, 1157, 1325, 1331
BseJI	GATNNNNATC	1 cut(s)	1266
BseLI	CCNNNNNNNGG	2 cut(s)	472, 1271
BseMI	GCAATG	2 cut(s)	944, 1175
BseMII	CTCAG	6 cut(s)	48, 726, 953, 1013, 1067, 1212
BseNI	ACTGG	2 cut(s)	679, 1092
BseRI	GAGGAG	5 cut(s)	697, 700, 703, 1009, 1183
BseXI	GCAGC	8 cut(s)	288, 361, 743, 745, 808, 905, 961, 1264
BseYI	CCCAGC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	2 cut(s)	432, 744
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	4 cut(s)	327, 605, 715, 1190
BshNI	GGYRCC	2 cut(s)	628, 1294
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	1 cut(s)	1335
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	472, 1271
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	4 cut(s)	327, 605, 715, 1190
BsoBI	CYCGRG	1 cut(s)	804
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	745, 1261
Bsp1720I	GCTNAGC	1 cut(s)	939
BspANI	GGCC	4 cut(s)	327, 605, 715, 1190
BspCNI	CTCAG	6 cut(s)	47, 727, 952, 1012, 1066, 1213
BspFNI	CGCG	2 cut(s)	432, 744
BspLI	GGNNCC	3 cut(s)	630, 1263, 1296
BspMAI	CTGCAG	1 cut(s)	1254
BspOI	GCTAGC	1 cut(s)	84
BspPI	GGATC	3 cut(s)	740, 1256, 1269
BspT107I	GGYRCC	2 cut(s)	628, 1294
BsrDI	GCAATG	2 cut(s)	944, 1175
BsrI	ACTGG	2 cut(s)	679, 1092
BssECI	CCNNGG	2 cut(s)	716, 1185
BssMI	GATC	2 cut(s)	745, 1261
BssNI	GRCGYC	2 cut(s)	185, 1121
Bst2UI	CCWGG	1 cut(s)	1292
Bst4CI	ACNGT	2 cut(s)	209, 610
Bst6I	CTCTTC	1 cut(s)	1201
BstACI	GRCGYC	2 cut(s)	185, 1121
BstC8I	GCNNGC	2 cut(s)	82, 1005
BstDEI	CTNAG	7 cut(s)	34, 735, 827, 939, 999, 1053, 1221
BstDSI	CCRYGG	1 cut(s)	716
BstF5I	GGATG	6 cut(s)	879, 1012, 1029, 1157, 1325, 1331
BstFNI	CGCG	2 cut(s)	432, 744
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	2 cut(s)	748, 1264
BstMBI	GATC	2 cut(s)	745, 1261
BstMCI	CGRYCG	1 cut(s)	211
BstNI	CCWGG	1 cut(s)	1292
BstNSI	RCATGY	2 cut(s)	173, 257
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	1290
BstSFI	CTRYAG	2 cut(s)	505, 1250
BstUI	CGCG	2 cut(s)	432, 744
BstV1I	GCAGC	8 cut(s)	288, 361, 743, 745, 808, 905, 961, 1264
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	1261
BstYI	RGATCY	1 cut(s)	1261
BsuRI	GGCC	4 cut(s)	327, 605, 715, 1190
BtgI	CCRYGG	1 cut(s)	716
BtgZI	GCGATG	2 cut(s)	99, 248
BtsCI	GGATG	6 cut(s)	879, 1012, 1029, 1157, 1325, 1331
Cac8I	GCNNGC	2 cut(s)	82, 1005
CaiI	CAGNNNCTG	2 cut(s)	656, 896
CfoI	GCGC	1 cut(s)	432
CseI	GACGC	4 cut(s)	86, 193, 259, 1110
Csp6I	GTAC	3 cut(s)	205, 629, 1099
CviAII	CATG	3 cut(s)	170, 254, 472
CviQI	GTAC	3 cut(s)	205, 629, 1099
DdeI	CTNAG	7 cut(s)	34, 735, 827, 939, 999, 1053, 1221
DpnI	GATC	2 cut(s)	747, 1263
DpnII	GATC	2 cut(s)	745, 1261
EaeI	YGGCCR	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	1201
EarI	CTCTTC	1 cut(s)	1201
EciI	GGCGGA	3 cut(s)	135, 951, 1060
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	804
EcoICRI	GAGCTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	1290
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	3 cut(s)	173, 257, 475
FaiI	YATR	6 cut(s)	171, 255, 294, 473, 507, 813
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	3 cut(s)	169, 253, 471
FokI	GGATG	6 cut(s)	866, 999, 1016, 1144, 1312, 1318
FriOI	GRGCYC	1 cut(s)	35
FspBI	CTAG	4 cut(s)	81, 318, 323, 921
GlaI	GCGC	1 cut(s)	431
GsaI	CCCAGC	1 cut(s)	289
HaeIII	GGCC	4 cut(s)	327, 605, 715, 1190
HapII	CCGG	1 cut(s)	1335
HgaI	GACGC	4 cut(s)	86, 193, 259, 1110
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	2 cut(s)	185, 1121
Hin1II	CATG	3 cut(s)	173, 257, 475
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	1005
HpaII	CCGG	1 cut(s)	1335
HphI	GGTGA	1 cut(s)	986
Hpy188I	TCNGA	8 cut(s)	532, 836, 875, 1024, 1034, 1222, 1266, 1285
Hpy188III	TCNNGA	3 cut(s)	36, 264, 921
Hpy99I	CGWCG	3 cut(s)	80, 187, 604
HpyAV	CCTTC	5 cut(s)	7, 152, 189, 393, 1070
HpyCH4III	ACNGT	2 cut(s)	209, 610
HpyCH4IV	ACGT	3 cut(s)	314, 870, 1154
HpyCH4V	TGCA	8 cut(s)	95, 344, 551, 650, 761, 949, 1175, 1252
HpyF3I	CTNAG	7 cut(s)	34, 735, 827, 939, 999, 1053, 1221
HpySE526I	ACGT	3 cut(s)	314, 870, 1154
Hsp92I	GRCGYC	2 cut(s)	185, 1121
Hsp92II	CATG	3 cut(s)	173, 257, 475
HspAI	GCGC	1 cut(s)	430
KpnI	GGTACC	1 cut(s)	632
Kzo9I	GATC	2 cut(s)	745, 1261
LmnI	GCTCC	2 cut(s)	30, 1062
Lsp1109I	GCAGC	8 cut(s)	288, 361, 743, 745, 808, 905, 961, 1264
LweI	GCATC	2 cut(s)	82, 353
MaeI	CTAG	4 cut(s)	81, 318, 323, 921
MaeII	ACGT	3 cut(s)	314, 870, 1154
MaeIII	GTNAC	3 cut(s)	310, 1122, 1305
MalI	GATC	2 cut(s)	747, 1263
MboI	GATC	2 cut(s)	745, 1261
MfeI	CAATTG	1 cut(s)	1115
MflI	RGATCY	1 cut(s)	1261
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	8 cut(s)	467, 574, 851, 910, 916, 1081, 1108, 1115
MlyI	GAGTC	5 cut(s)	59, 542, 774, 870, 1070
MmeI	TCCRAC	1 cut(s)	907
MseI	TTAA	3 cut(s)	102, 111, 854
MspA1I	CMGCKG	4 cut(s)	374, 626, 734, 896
MspI	CCGG	1 cut(s)	1335
MspR9I	CCNGG	1 cut(s)	1292
MunI	CAATTG	1 cut(s)	1115
MvaI	CCWGG	1 cut(s)	1292
MvnI	CGCG	2 cut(s)	432, 744
NdeII	GATC	2 cut(s)	745, 1261
NheI	GCTAGC	1 cut(s)	80
NlaIII	CATG	3 cut(s)	173, 257, 475
NlaIV	GGNNCC	3 cut(s)	630, 1263, 1296
NmeAIII	GCCGAG	2 cut(s)	753, 1166
NmuCI	GTSAC	2 cut(s)	1122, 1305
NspI	RCATGY	2 cut(s)	173, 257
PciI	ACATGT	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 780
PfeI	GAWTC	5 cut(s)	476, 653, 831, 1228, 1267
PflMI	CCANNNNNTGG	1 cut(s)	472
PleI	GAGTC	5 cut(s)	59, 541, 773, 870, 1070
PpsI	GAGTC	5 cut(s)	59, 541, 773, 870, 1070
PscI	ACATGT	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	254
PshBI	ATTAAT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	1290
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	1290
PspN4I	GGNNCC	3 cut(s)	630, 1263, 1296
PstI	CTGCAG	1 cut(s)	1254
PstNI	CAGNNNCTG	2 cut(s)	656, 896
PsuI	RGATCY	1 cut(s)	1261
PvuII	CAGCTG	3 cut(s)	374, 734, 896
RsaI	GTAC	3 cut(s)	206, 630, 1100
RsaNI	GTAC	3 cut(s)	205, 629, 1099
SacI	GAGCTC	1 cut(s)	35
SaqAI	TTAA	3 cut(s)	102, 111, 854
Sau3AI	GATC	2 cut(s)	745, 1261
SchI	GAGTC	5 cut(s)	59, 542, 774, 870, 1070
ScrFI	CCNGG	1 cut(s)	1292
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	2 cut(s)	82, 353
SfcI	CTRYAG	2 cut(s)	505, 1250
Sse9I	AATT	8 cut(s)	467, 574, 851, 910, 916, 1081, 1108, 1115
SspI	AATATT	2 cut(s)	100, 109
SspMI	CTAG	4 cut(s)	81, 318, 323, 921
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	1290
TaaI	ACNGT	2 cut(s)	209, 610
TaiI	ACGT	3 cut(s)	317, 873, 1157
TaqI	TCGA	2 cut(s)	182, 783
TaqII	GACCGA	1 cut(s)	404
TasI	AATT	8 cut(s)	467, 574, 851, 910, 916, 1081, 1108, 1115
TatI	WGTACW	1 cut(s)	1098
TauI	GCSGC	9 cut(s)	45, 139, 142, 218, 800, 803, 955, 958, 967
TfiI	GAWTC	5 cut(s)	476, 653, 831, 1228, 1267
Tru1I	TTAA	3 cut(s)	102, 111, 854
Tru9I	TTAA	3 cut(s)	102, 111, 854
TseFI	GTSAC	2 cut(s)	1122, 1305
TseI	GCWGC	8 cut(s)	276, 374, 731, 758, 821, 893, 949, 1252
Tsp45I	GTSAC	2 cut(s)	1122, 1305
TspDTI	ATGAA	7 cut(s)	339, 460, 528, 651, 831, 1001, 1191
TspGWI	ACGGA	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	472
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	3 cut(s)	574, 916, 1081
XbaI	TCTAGA	1 cut(s)	920
XceI	RCATGY	2 cut(s)	173, 257
XspI	CTAG	4 cut(s)	81, 318, 323, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.