transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g13240 FvH4_2g13240 |
| malus_domestica | MD05G1030800.v1.1 MD10G1032000.v1.1 |
| prunus_persica | Prupe.8G037900_v2.0.a1 |
| pyrus_communis | pycom05g02190 pycom10g02050 |
| rosa_chinensis | RchiOBHm_Chr6g0274591 |
| rosa_laevigata | RLG00000013534 |
| rosa_multiflora | Rmu_sc0006850.1_g000002 |
| rosa_roxburghii | Rroxscaffold_7G00194100 |
| rosa_rugosa | Rorug06G0082400 Rorug06G0082500 |
| rosa_samantha | Rh6AG198800 Rh6BG202000 Rh6CG202700 Rh6DG193800 |
| rosa_wichuraiana | Rw6G017280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 475 |
| AccII | CGCG | 1 cut(s) | 1249 |
| AclI | AACGTT | 1 cut(s) | 165 |
| AclWI | GGATC | 1 cut(s) | 731 |
| AcoI | YGGCCR | 2 cut(s) | 197, 418 |
| AcsI | RAATTY | 1 cut(s) | 1072 |
| AcuI | CTGAAG | 2 cut(s) | 32, 1001 |
| AfaI | GTAC | 4 cut(s) | 191, 624, 828, 1091 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 475, 675, 968 |
| AgsI | TTSAA | 5 cut(s) | 59, 66, 662, 865, 1118 |
| AjnI | CCWGG | 1 cut(s) | 1264 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 788, 820 |
| Alw21I | GWGCWC | 2 cut(s) | 35, 1025 |
| Alw26I | GTCTC | 2 cut(s) | 695, 984 |
| AlwI | GGATC | 1 cut(s) | 731 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 617, 650, 875 |
| AoxI | GGCC | 4 cut(s) | 197, 418, 465, 708 |
| ApoI | RAATTY | 1 cut(s) | 1072 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 166, 198 |
| AseI | ATTAAT | 3 cut(s) | 129, 140, 1260 |
| AspLEI | GCGC | 1 cut(s) | 880 |
| AspS9I | GGNCC | 2 cut(s) | 386, 466 |
| AsuHPI | GGTGA | 3 cut(s) | 149, 524, 571 |
| AvaII | GGWCC | 1 cut(s) | 386 |
| BalI | TGGCCA | 1 cut(s) | 420 |
| BanII | GRGCYC | 2 cut(s) | 35, 1025 |
| BbsI | GAAGAC | 1 cut(s) | 534 |
| Bbv12I | GWGCWC | 2 cut(s) | 35, 1025 |
| BccI | CCATC | 6 cut(s) | 634, 643, 1147, 1177, 1300, 1327 |
| BceAI | ACGGC | 1 cut(s) | 605 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 749, 783 |
| BciT130I | CCWGG | 1 cut(s) | 1266 |
| BclI | TGATCA | 1 cut(s) | 1213 |
| BcoDI | GTCTC | 2 cut(s) | 695, 984 |
| BfaI | CTAG | 1 cut(s) | 300 |
| BfmI | CTRYAG | 2 cut(s) | 749, 1079 |
| BlpI | GCTNAGC | 1 cut(s) | 909 |
| Bme1390I | CCNGG | 1 cut(s) | 1266 |
| Bme18I | GGWCC | 1 cut(s) | 386 |
| BmgT120I | GGNCC | 2 cut(s) | 386, 466 |
| BmiI | GGNNCC | 2 cut(s) | 388, 973 |
| BmrFI | CCNGG | 1 cut(s) | 1266 |
| BpiI | GAAGAC | 1 cut(s) | 534 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 783, 815 |
| BpmI | CTGGAG | 1 cut(s) | 1132 |
| Bpu10I | CCTNAGC | 2 cut(s) | 34, 462 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 909 |
| BsaAI | YACGTR | 1 cut(s) | 734 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1218 |
| BsaJI | CCNNGG | 2 cut(s) | 79, 711 |
| BsaWI | WCCGGW | 1 cut(s) | 1328 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 837, 867 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 475, 675, 968 |
| Bse1I | ACTGG | 2 cut(s) | 1110, 1149 |
| Bse3DI | GCAATG | 3 cut(s) | 222, 914, 1163 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1218 |
| BseBI | CCWGG | 1 cut(s) | 1266 |
| BseDI | CCNNGG | 2 cut(s) | 79, 711 |
| BseGI | GGATG | 5 cut(s) | 626, 829, 1142, 1169, 1319 |
| BseJI | GATNNNNATC | 1 cut(s) | 1218 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 475, 675, 968 |
| BseMI | GCAATG | 3 cut(s) | 222, 914, 1163 |
| BseMII | CTCAG | 8 cut(s) | 48, 476, 528, 657, 717, 923, 1000, 1022 |
| BseNI | ACTGG | 2 cut(s) | 1110, 1149 |
| BseRI | GAGGAG | 4 cut(s) | 43, 694, 697, 964 |
| BseYI | CCCAGC | 2 cut(s) | 267, 1285 |
| Bsh1236I | CGCG | 1 cut(s) | 1249 |
| BshFI | GGCC | 4 cut(s) | 199, 420, 467, 710 |
| BsiHKAI | GWGCWC | 2 cut(s) | 35, 1025 |
| BsiSI | CCGG | 2 cut(s) | 1308, 1329 |
| BslFI | GGGAC | 2 cut(s) | 285, 372 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 475, 675, 968 |
| BsmAI | GTCTC | 2 cut(s) | 695, 984 |
| BsmFI | GGGAC | 2 cut(s) | 285, 372 |
| BsnI | GGCC | 4 cut(s) | 199, 420, 467, 710 |
| Bsp1286I | GDGCHC | 2 cut(s) | 35, 1025 |
| Bsp1407I | TGTACA | 1 cut(s) | 826 |
| Bsp143I | GATC | 2 cut(s) | 736, 1213 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 909 |
| Bsp19I | CCATGG | 2 cut(s) | 79, 711 |
| BspANI | GGCC | 4 cut(s) | 199, 420, 467, 710 |
| BspCNI | CTCAG | 8 cut(s) | 47, 475, 529, 656, 718, 922, 999, 1021 |
| BspFNI | CGCG | 1 cut(s) | 1249 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 2 cut(s) | 388, 973 |
| BspMAI | CTGCAG | 1 cut(s) | 753 |
| BspPI | GGATC | 1 cut(s) | 731 |
| BsrDI | GCAATG | 3 cut(s) | 222, 914, 1163 |
| BsrGI | TGTACA | 1 cut(s) | 826 |
| BsrI | ACTGG | 2 cut(s) | 1110, 1149 |
| BssECI | CCNNGG | 2 cut(s) | 79, 711 |
| BssMI | GATC | 2 cut(s) | 736, 1213 |
| BssT1I | CCWWGG | 2 cut(s) | 79, 711 |
| Bst2UI | CCWGG | 1 cut(s) | 1266 |
| Bst4CI | ACNGT | 3 cut(s) | 194, 652, 1305 |
| Bst6I | CTCTTC | 2 cut(s) | 1162, 1330 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 617 |
| BstAUI | TGTACA | 1 cut(s) | 826 |
| BstBAI | YACGTR | 1 cut(s) | 734 |
| BstC8I | GCNNGC | 2 cut(s) | 8, 1244 |
| BstDEI | CTNAG | 8 cut(s) | 34, 462, 537, 643, 726, 909, 986, 1008 |
| BstDSI | CCRYGG | 2 cut(s) | 79, 711 |
| BstF5I | GGATG | 5 cut(s) | 626, 829, 1142, 1169, 1319 |
| BstFNI | CGCG | 1 cut(s) | 1249 |
| BstHHI | GCGC | 1 cut(s) | 880 |
| BstKTI | GATC | 2 cut(s) | 739, 1216 |
| BstMAI | GTCTC | 2 cut(s) | 695, 984 |
| BstMBI | GATC | 2 cut(s) | 736, 1213 |
| BstNI | CCWGG | 1 cut(s) | 1266 |
| BstNSI | RCATGY | 1 cut(s) | 239 |
| BstSCI | CCNGG | 1 cut(s) | 1264 |
| BstSFI | CTRYAG | 2 cut(s) | 749, 1079 |
| BstUI | CGCG | 1 cut(s) | 1249 |
| BstV2I | GAAGAC | 1 cut(s) | 534 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 718 |
| BsuRI | GGCC | 4 cut(s) | 199, 420, 467, 710 |
| BtgI | CCRYGG | 2 cut(s) | 79, 711 |
| BtsCI | GGATG | 5 cut(s) | 626, 829, 1142, 1169, 1319 |
| BtsI | GCAGTG | 1 cut(s) | 265 |
| BtsIMutI | CAGTG | 2 cut(s) | 265, 1026 |
| Cac8I | GCNNGC | 2 cut(s) | 8, 1244 |
| CaiI | CAGNNNCTG | 3 cut(s) | 617, 650, 875 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 1 cut(s) | 880 |
| Cfr13I | GGNCC | 2 cut(s) | 386, 466 |
| Csp6I | GTAC | 4 cut(s) | 190, 623, 827, 1090 |
| CviAII | CATG | 7 cut(s) | 80, 134, 236, 475, 712, 968, 1037 |
| CviQI | GTAC | 4 cut(s) | 190, 623, 827, 1090 |
| DdeI | CTNAG | 8 cut(s) | 34, 462, 537, 643, 726, 909, 986, 1008 |
| DpnI | GATC | 2 cut(s) | 738, 1215 |
| DpnII | GATC | 2 cut(s) | 736, 1213 |
| EaeI | YGGCCR | 2 cut(s) | 197, 418 |
| Eam1104I | CTCTTC | 2 cut(s) | 1162, 1330 |
| EarI | CTCTTC | 2 cut(s) | 1162, 1330 |
| EciI | GGCGGA | 2 cut(s) | 589, 1229 |
| Ecl136II | GAGCTC | 2 cut(s) | 33, 1023 |
| Eco130I | CCWWGG | 2 cut(s) | 79, 711 |
| Eco24I | GRGCYC | 2 cut(s) | 35, 1025 |
| Eco47I | GGWCC | 1 cut(s) | 386 |
| Eco53kI | GAGCTC | 2 cut(s) | 33, 1023 |
| Eco57I | CTGAAG | 2 cut(s) | 32, 1001 |
| EcoICRI | GAGCTC | 2 cut(s) | 33, 1023 |
| EcoRII | CCWGG | 1 cut(s) | 1264 |
| EcoT14I | CCWWGG | 2 cut(s) | 79, 711 |
| EcoT38I | GRGCYC | 2 cut(s) | 35, 1025 |
| ErhI | CCWWGG | 2 cut(s) | 79, 711 |
| FaeI | CATG | 7 cut(s) | 83, 137, 239, 478, 715, 971, 1040 |
| FaqI | GGGAC | 2 cut(s) | 285, 372 |
| FatI | CATG | 7 cut(s) | 79, 133, 235, 474, 711, 967, 1036 |
| FauI | CCCGC | 2 cut(s) | 676, 1251 |
| FbaI | TGATCA | 1 cut(s) | 1213 |
| FokI | GGATG | 5 cut(s) | 613, 816, 1129, 1156, 1306 |
| FriOI | GRGCYC | 2 cut(s) | 35, 1025 |
| FspBI | CTAG | 1 cut(s) | 300 |
| GlaI | GCGC | 1 cut(s) | 879 |
| GsaI | CCCAGC | 2 cut(s) | 271, 1289 |
| GsuI | CTGGAG | 1 cut(s) | 1132 |
| HaeIII | GGCC | 4 cut(s) | 199, 420, 467, 710 |
| HapII | CCGG | 2 cut(s) | 1308, 1329 |
| HhaI | GCGC | 1 cut(s) | 880 |
| Hin1II | CATG | 7 cut(s) | 83, 137, 239, 478, 715, 971, 1040 |
| Hin6I | GCGC | 1 cut(s) | 878 |
| HinP1I | GCGC | 1 cut(s) | 878 |
| HinfI | GANTC | 6 cut(s) | 59, 479, 539, 777, 872, 1219 |
| HpaII | CCGG | 2 cut(s) | 1308, 1329 |
| HphI | GGTGA | 3 cut(s) | 149, 524, 571 |
| Hpy166II | GTNNAC | 1 cut(s) | 496 |
| Hpy188III | TCNNGA | 2 cut(s) | 134, 246 |
| Hpy8I | GTNNAC | 1 cut(s) | 496 |
| Hpy99I | CGWCG | 1 cut(s) | 74 |
| HpyAV | CCTTC | 2 cut(s) | 7, 357 |
| HpyCH4III | ACNGT | 3 cut(s) | 194, 652, 1305 |
| HpyCH4IV | ACGT | 3 cut(s) | 165, 296, 733 |
| HpyCH4V | TGCA | 4 cut(s) | 554, 751, 919, 1040 |
| HpyF3I | CTNAG | 8 cut(s) | 34, 462, 537, 643, 726, 909, 986, 1008 |
| HpySE526I | ACGT | 3 cut(s) | 165, 296, 733 |
| Hsp92II | CATG | 7 cut(s) | 83, 137, 239, 478, 715, 971, 1040 |
| HspAI | GCGC | 1 cut(s) | 878 |
| Ksp22I | TGATCA | 1 cut(s) | 1213 |
| Kzo9I | GATC | 2 cut(s) | 736, 1213 |
| LmnI | GCTCC | 4 cut(s) | 30, 898, 977, 1028 |
| MaeI | CTAG | 1 cut(s) | 300 |
| MaeII | ACGT | 3 cut(s) | 165, 296, 733 |
| MaeIII | GTNAC | 4 cut(s) | 260, 292, 577, 1299 |
| MalI | GATC | 2 cut(s) | 738, 1215 |
| MboI | GATC | 2 cut(s) | 736, 1213 |
| MhlI | GDGCHC | 2 cut(s) | 35, 1025 |
| MlsI | TGGCCA | 1 cut(s) | 420 |
| MluCI | AATT | 7 cut(s) | 137, 149, 409, 470, 865, 1072, 1096 |
| MluNI | TGGCCA | 1 cut(s) | 420 |
| MlyI | GAGTC | 1 cut(s) | 548 |
| Mox20I | TGGCCA | 1 cut(s) | 420 |
| MscI | TGGCCA | 1 cut(s) | 420 |
| MseI | TTAA | 7 cut(s) | 129, 140, 230, 773, 1130, 1260, 1333 |
| MslI | CAYNNNNRTG | 1 cut(s) | 716 |
| Msp20I | TGGCCA | 1 cut(s) | 420 |
| MspA1I | CMGCKG | 2 cut(s) | 267, 725 |
| MspI | CCGG | 2 cut(s) | 1308, 1329 |
| MspR9I | CCNGG | 1 cut(s) | 1266 |
| MvaI | CCWGG | 1 cut(s) | 1266 |
| MvnI | CGCG | 1 cut(s) | 1249 |
| NcoI | CCATGG | 2 cut(s) | 79, 711 |
| NdeII | GATC | 2 cut(s) | 736, 1213 |
| NlaIII | CATG | 7 cut(s) | 83, 137, 239, 478, 715, 971, 1040 |
| NlaIV | GGNNCC | 2 cut(s) | 388, 973 |
| NmuCI | GTSAC | 3 cut(s) | 260, 577, 1299 |
| NspI | RCATGY | 1 cut(s) | 239 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PfeI | GAWTC | 5 cut(s) | 59, 479, 777, 872, 1219 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 475 |
| PleI | GAGTC | 1 cut(s) | 547 |
| PpsI | GAGTC | 1 cut(s) | 547 |
| Ppu21I | YACGTR | 1 cut(s) | 734 |
| PshBI | ATTAAT | 3 cut(s) | 129, 140, 1260 |
| Psp124BI | GAGCTC | 2 cut(s) | 35, 1025 |
| Psp1406I | AACGTT | 1 cut(s) | 165 |
| Psp6I | CCWGG | 1 cut(s) | 1264 |
| PspFI | CCCAGC | 2 cut(s) | 267, 1285 |
| PspGI | CCWGG | 1 cut(s) | 1264 |
| PspN4I | GGNNCC | 2 cut(s) | 388, 973 |
| PspPI | GGNCC | 2 cut(s) | 386, 466 |
| PstI | CTGCAG | 1 cut(s) | 753 |
| PstNI | CAGNNNCTG | 3 cut(s) | 617, 650, 875 |
| PvuII | CAGCTG | 2 cut(s) | 267, 725 |
| RsaI | GTAC | 4 cut(s) | 191, 624, 828, 1091 |
| RsaNI | GTAC | 4 cut(s) | 190, 623, 827, 1090 |
| RseI | CAYNNNNRTG | 1 cut(s) | 716 |
| SacI | GAGCTC | 2 cut(s) | 35, 1025 |
| SaqAI | TTAA | 7 cut(s) | 129, 140, 230, 773, 1130, 1260, 1333 |
| Sau3AI | GATC | 2 cut(s) | 736, 1213 |
| Sau96I | GGNCC | 2 cut(s) | 386, 466 |
| SchI | GAGTC | 1 cut(s) | 548 |
| ScrFI | CCNGG | 1 cut(s) | 1266 |
| SduI | GDGCHC | 2 cut(s) | 35, 1025 |
| SfcI | CTRYAG | 2 cut(s) | 749, 1079 |
| SinI | GGWCC | 1 cut(s) | 386 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 716 |
| Sse9I | AATT | 7 cut(s) | 137, 149, 409, 470, 865, 1072, 1096 |
| SspMI | CTAG | 1 cut(s) | 300 |
| SstI | GAGCTC | 2 cut(s) | 35, 1025 |
| StyD4I | CCNGG | 1 cut(s) | 1264 |
| StyI | CCWWGG | 2 cut(s) | 79, 711 |
| TaaI | ACNGT | 3 cut(s) | 194, 652, 1305 |
| TaiI | ACGT | 3 cut(s) | 168, 299, 736 |
| TasI | AATT | 7 cut(s) | 137, 149, 409, 470, 865, 1072, 1096 |
| TatI | WGTACW | 2 cut(s) | 826, 1089 |
| TauI | GCSGC | 2 cut(s) | 605, 1249 |
| TfiI | GAWTC | 5 cut(s) | 59, 479, 777, 872, 1219 |
| Tru1I | TTAA | 7 cut(s) | 129, 140, 230, 773, 1130, 1260, 1333 |
| Tru9I | TTAA | 7 cut(s) | 129, 140, 230, 773, 1130, 1260, 1333 |
| TscAI | CASTG | 2 cut(s) | 265, 1033 |
| TseFI | GTSAC | 3 cut(s) | 260, 577, 1299 |
| Tsp45I | GTSAC | 3 cut(s) | 260, 577, 1299 |
| TspDTI | ATGAA | 9 cut(s) | 150, 158, 363, 463, 534, 645, 777, 956, 1182 |
| TspGWI | ACGGA | 1 cut(s) | 218 |
| TspRI | CASTG | 2 cut(s) | 265, 1033 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 475 |
| VpaK11BI | GGWCC | 1 cut(s) | 386 |
| VspI | ATTAAT | 3 cut(s) | 129, 140, 1260 |
| XapI | RAATTY | 1 cut(s) | 1072 |
| XceI | RCATGY | 1 cut(s) | 239 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 965, 1293 |
| XspI | CTAG | 1 cut(s) | 300 |