Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013610

Physical Location & Seq

Genomic Coordinates Forward (+)

4124086 .. 4126524

Gene Structure 2439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1032000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGTGCTTACTGAAGGTGGCGAACCAAAGGGGCTCAGGAGGCGGCGGTCAATACGACAGGTTTGACTCTCCAAACGACGCTAGCGATGTTGATGCAAATATTAATAACATTAACTACGGCGGAGGATTAGAGTTGCCGCCGCCTTATCAACAACAAGAAGGACAACAACATGTTTCGCCTTCGACGCCGACAATGTTTTTGGGGTACAGTCGGTCGGCTACGGAGATGTCGGCGATGGTGTCGGCTTTGACGCAAGTCGTTTCGGGACAGAGAGGCAGCGATAGCCGGGGGCATATTGGAAGCGGTGGAGTTACGTCTAGTCTAGGCCAACTTTATTCTTCTGCATCTTCATCTTCTGCTTCTCCTTTGTCAGCTGCTTTTCCTTCAAGTGCTTCTGGTTCTCACTATTGGGTCGGTCAAAAGAGAGGGCGCGAACAAGATTTTGCTTCTGCTTCTGCTCAAAGCCAATTCATGGAATCTGGTAATAGAGCTTTTAGAGGTGGCTATAGGGATTACAGAGGAACGCAATCAGAGTCTTCATCTGGTGGTGCAACTGTGACAGAAGAAACTACAAATTTTGCCACCGCCCCCACCACTACGACGGCCACCGTATCTGCTACCACAGCGGTACCAACCACACCATCAAGTGCAGAATCTGTTTCATTTGAAGAAACTGGCGAGACGAGGAGGAGATACAGGGGAGTTAGACAGAGGCCGTGGGGTAAATGGGCAGCTGAGATACGCGATCCACACAAAGCTGCAAGAGTCTGGCTCGGCACATTCGACACGGCGGAAGCCGCCGCCCGAGCCTATGATGAAGCTGCTCTAAGATTCAGAGGAAACAGAGCTAAATTAAACTTCCCAGAAAACGTCAGACTCATCCAACCACCAGCAGCTGTCCAAACATTCAATTCAAATTCTAGACCAACACAATCAGCTCAGCCATTGCAGCCGCCGCCACAACCGCCACAACAGCAACTCTATCACTCCCAGCAAGCTTTTCATCCCTCCTCTGACCTCATCCGAGATTACTTTGACTACTCTCAGCTCCTTCAAAACTCCGCCGACTCAAATTTGCTGGAACATATGTACTACTACAATTCCCAGTTGGTGTCACTTCAATCTTCTTTGCTACAACCTACAACGTCATCCACTCCATCTTCTGCATTGCCGTCCTCGGCCTCCTCTTCTTCATTTCCTCTGTTTTTCTCTGAGCAGAATCAGCAACAGGGTTTTTTCCGGCAGCCACAGGATCCGAATCAGGGTGGTTCGTCTGATTTCCAGGCACCATCTTGGTCACATTCCGGCAACAATCCATCCTCATCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034284 GO:0040034 GO:0042221 GO:0043207 GO:0045893 GO:0045935 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

444

Amino Acids

47.69

Weight (kDa)

6.26

Isoelectric Point (pI)

65.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	231 - 280	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13240 FvH4_2g13240
malus_domestica	MD05G1030800.v1.1 MD10G1032000.v1.1
prunus_persica	Prupe.8G037900_v2.0.a1
pyrus_communis	pycom05g02190 pycom10g02050
rosa_chinensis	RchiOBHm_Chr6g0274591
rosa_laevigata	RLG00000013534
rosa_multiflora	Rmu_sc0006850.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194100
rosa_rugosa	Rorug06G0082400 Rorug06G0082500
rosa_samantha	Rh6AG198800 Rh6BG202000 Rh6CG202700 Rh6DG193800
rosa_wichuraiana	Rw6G017280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	628
AccB1I	GGYRCC	2 cut(s)	628, 1285
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccII	CGCG	2 cut(s)	432, 744
AclWI	GGATC	3 cut(s)	740, 1247, 1260
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	3 cut(s)	574, 916, 1072
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	3 cut(s)	206, 630, 1091
AfiI	CCNNNNNNNGG	2 cut(s)	472, 1262
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	6 cut(s)	387, 668, 910, 915, 1055, 1121
AjnI	CCWGG	1 cut(s)	1281
Alw26I	GTCTC	1 cut(s)	674
AlwI	GGATC	3 cut(s)	740, 1247, 1260
AlwNI	CAGNNNCTG	2 cut(s)	656, 896
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	4 cut(s)	325, 603, 713, 1179
ApeKI	GCWGC	8 cut(s)	276, 374, 731, 758, 821, 893, 949, 1243
ApoI	RAATTY	3 cut(s)	574, 916, 1072
ArsI	GACNNNNNNTTYG	2 cut(s)	181, 213
AseI	ATTAAT	1 cut(s)	102
Asp718I	GGTACC	1 cut(s)	628
AspLEI	GCGC	1 cut(s)	432
AsuC2I	CCSGG	1 cut(s)	287
AsuNHI	GCTAGC	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	804
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BamHI	GGATCC	1 cut(s)	1252
BanI	GGYRCC	2 cut(s)	628, 1285
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	8 cut(s)	288, 361, 743, 745, 808, 905, 961, 1255
BccI	CCATC	5 cut(s)	229, 649, 1165, 1297, 1324
BceAI	ACGGC	5 cut(s)	133, 618, 700, 804, 1156
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	1283
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	674
BfaI	CTAG	4 cut(s)	81, 318, 323, 921
BfmI	CTRYAG	1 cut(s)	505
BlpI	GCTNAGC	1 cut(s)	939
Bme1390I	CCNGG	2 cut(s)	287, 1283
BmeT110I	CYCGRG	1 cut(s)	804
BmiI	GGNNCC	3 cut(s)	630, 1254, 1287
BmrFI	CCNGG	2 cut(s)	287, 1283
BmrI	ACTGGG	1 cut(s)	1099
BmsI	GCATC	2 cut(s)	82, 353
BmtI	GCTAGC	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	1099
BoxI	GACNNNNGTC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	528
BplI	GAGNNNNNCTC	2 cut(s)	756, 788
Bpu10I	CCTNAGC	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	939
BpuMI	CCSGG	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	1257
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	286, 716, 1176
BsaWI	WCCGGW	1 cut(s)	1325
Bsc4I	CCNNNNNNNGG	2 cut(s)	472, 1262
Bse1I	ACTGG	2 cut(s)	679, 1105
Bse3DI	GCAATG	2 cut(s)	944, 1166
Bse8I	GATNNNNATC	1 cut(s)	1257
BseBI	CCWGG	1 cut(s)	1283
BseDI	CCNNGG	3 cut(s)	286, 716, 1176
BseGI	GGATG	6 cut(s)	879, 1003, 1020, 1148, 1316, 1322
BseJI	GATNNNNATC	1 cut(s)	1257
BseLI	CCNNNNNNNGG	2 cut(s)	472, 1262
BseMI	GCAATG	2 cut(s)	944, 1166
BseMII	CTCAG	5 cut(s)	48, 726, 953, 1058, 1203
BseNI	ACTGG	2 cut(s)	679, 1105
BseRI	GAGGAG	4 cut(s)	700, 703, 1000, 1174
BseXI	GCAGC	8 cut(s)	288, 361, 743, 745, 808, 905, 961, 1255
BseYI	CCCAGC	1 cut(s)	990
BsgI	GTGCAG	1 cut(s)	669
Bsh1236I	CGCG	2 cut(s)	432, 744
Bsh1285I	CGRYCG	1 cut(s)	215
BshFI	GGCC	4 cut(s)	327, 605, 715, 1181
BshNI	GGYRCC	2 cut(s)	628, 1285
BsiEI	CGRYCG	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	4 cut(s)	286, 1240, 1305, 1326
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	2 cut(s)	472, 1262
BsmAI	GTCTC	1 cut(s)	674
BsmBI	CGTCTC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	4 cut(s)	327, 605, 715, 1181
BsoBI	CYCGRG	1 cut(s)	804
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	745, 1252
Bsp1720I	GCTNAGC	1 cut(s)	939
BspANI	GGCC	4 cut(s)	327, 605, 715, 1181
BspCNI	CTCAG	5 cut(s)	47, 727, 952, 1057, 1204
BspFNI	CGCG	2 cut(s)	432, 744
BspLI	GGNNCC	3 cut(s)	630, 1254, 1287
BspOI	GCTAGC	1 cut(s)	84
BspPI	GGATC	3 cut(s)	740, 1247, 1260
BspT107I	GGYRCC	2 cut(s)	628, 1285
BsrDI	GCAATG	2 cut(s)	944, 1166
BsrI	ACTGG	2 cut(s)	679, 1105
BssECI	CCNNGG	3 cut(s)	286, 716, 1176
BssMI	GATC	2 cut(s)	745, 1252
BssNI	GRCGYC	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	1283
Bst4CI	ACNGT	3 cut(s)	209, 556, 610
Bst6I	CTCTTC	1 cut(s)	1192
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	82, 996
BstDEI	CTNAG	6 cut(s)	34, 735, 827, 939, 1044, 1212
BstDSI	CCRYGG	1 cut(s)	716
BstF5I	GGATG	6 cut(s)	879, 1003, 1020, 1148, 1316, 1322
BstFNI	CGCG	2 cut(s)	432, 744
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	2 cut(s)	748, 1255
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	2 cut(s)	745, 1252
BstMCI	CGRYCG	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	1283
BstNSI	RCATGY	1 cut(s)	173
BstPAI	GACNNNNGTC	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	285, 1281
BstSFI	CTRYAG	1 cut(s)	505
BstUI	CGCG	2 cut(s)	432, 744
BstV1I	GCAGC	8 cut(s)	288, 361, 743, 745, 808, 905, 961, 1255
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	1252
BstYI	RGATCY	1 cut(s)	1252
BsuRI	GGCC	4 cut(s)	327, 605, 715, 1181
BtgI	CCRYGG	1 cut(s)	716
BtgZI	GCGATG	2 cut(s)	99, 248
BtsCI	GGATG	6 cut(s)	879, 1003, 1020, 1148, 1316, 1322
Cac8I	GCNNGC	2 cut(s)	82, 996
CaiI	CAGNNNCTG	2 cut(s)	656, 896
CfoI	GCGC	1 cut(s)	432
CseI	GACGC	3 cut(s)	86, 193, 259
Csp6I	GTAC	3 cut(s)	205, 629, 1090
CviAII	CATG	2 cut(s)	170, 472
CviQI	GTAC	3 cut(s)	205, 629, 1090
DdeI	CTNAG	6 cut(s)	34, 735, 827, 939, 1044, 1212
DpnI	GATC	2 cut(s)	747, 1254
DpnII	GATC	2 cut(s)	745, 1252
EaeI	YGGCCR	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	1192
EarI	CTCTTC	1 cut(s)	1192
EciI	GGCGGA	3 cut(s)	135, 806, 1051
Eco24I	GRGCYC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	804
EcoRII	CCWGG	1 cut(s)	1281
EcoT38I	GRGCYC	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	674
FaeI	CATG	2 cut(s)	173, 475
FaiI	YATR	7 cut(s)	171, 294, 473, 507, 813, 1086, 1088
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	2 cut(s)	169, 471
FauNDI	CATATG	1 cut(s)	1086
FokI	GGATG	6 cut(s)	866, 990, 1007, 1135, 1303, 1309
FriOI	GRGCYC	1 cut(s)	35
FspBI	CTAG	4 cut(s)	81, 318, 323, 921
GlaI	GCGC	1 cut(s)	431
GsaI	CCCAGC	1 cut(s)	994
HaeIII	GGCC	4 cut(s)	327, 605, 715, 1181
HapII	CCGG	4 cut(s)	286, 1240, 1305, 1326
HgaI	GACGC	3 cut(s)	86, 193, 259
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	173, 475
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	996
HpaII	CCGG	4 cut(s)	286, 1240, 1305, 1326
Hpy188I	TCNGA	8 cut(s)	532, 836, 875, 1015, 1025, 1213, 1257, 1276
Hpy188III	TCNNGA	3 cut(s)	36, 264, 921
Hpy99I	CGWCG	3 cut(s)	80, 187, 604
HpyAV	CCTTC	5 cut(s)	7, 152, 189, 393, 1061
HpyCH4III	ACNGT	3 cut(s)	209, 556, 610
HpyCH4IV	ACGT	3 cut(s)	314, 870, 1145
HpyCH4V	TGCA	7 cut(s)	95, 344, 551, 650, 761, 949, 1166
HpyF3I	CTNAG	6 cut(s)	34, 735, 827, 939, 1044, 1212
HpySE526I	ACGT	3 cut(s)	314, 870, 1145
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	173, 475
HspAI	GCGC	1 cut(s)	430
KpnI	GGTACC	1 cut(s)	632
Kzo9I	GATC	2 cut(s)	745, 1252
LmnI	GCTCC	1 cut(s)	1053
Lsp1109I	GCAGC	8 cut(s)	288, 361, 743, 745, 808, 905, 961, 1255
LweI	GCATC	2 cut(s)	82, 353
MaeI	CTAG	4 cut(s)	81, 318, 323, 921
MaeII	ACGT	3 cut(s)	314, 870, 1145
MaeIII	GTNAC	4 cut(s)	310, 556, 1113, 1296
MalI	GATC	2 cut(s)	747, 1254
MboI	GATC	2 cut(s)	745, 1252
MflI	RGATCY	1 cut(s)	1252
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	7 cut(s)	467, 574, 851, 910, 916, 1072, 1099
MlyI	GAGTC	5 cut(s)	59, 542, 774, 870, 1061
MmeI	TCCRAC	1 cut(s)	907
MseI	TTAA	3 cut(s)	102, 111, 854
MspA1I	CMGCKG	4 cut(s)	374, 626, 734, 896
MspI	CCGG	4 cut(s)	286, 1240, 1305, 1326
MspR9I	CCNGG	2 cut(s)	287, 1283
MvaI	CCWGG	1 cut(s)	1283
MvnI	CGCG	2 cut(s)	432, 744
NciI	CCSGG	1 cut(s)	287
NdeI	CATATG	1 cut(s)	1086
NdeII	GATC	2 cut(s)	745, 1252
NheI	GCTAGC	1 cut(s)	80
NlaIII	CATG	2 cut(s)	173, 475
NlaIV	GGNNCC	3 cut(s)	630, 1254, 1287
NmeAIII	GCCGAG	2 cut(s)	753, 1157
NmuCI	GTSAC	3 cut(s)	556, 1113, 1296
NspI	RCATGY	1 cut(s)	173
PciI	ACATGT	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 780
PfeI	GAWTC	5 cut(s)	476, 653, 831, 1219, 1258
PflMI	CCANNNNNTGG	1 cut(s)	472
PleI	GAGTC	5 cut(s)	59, 541, 773, 870, 1061
PpsI	GAGTC	5 cut(s)	59, 541, 773, 870, 1061
PscI	ACATGT	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	254
PshBI	ATTAAT	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	1281
PspFI	CCCAGC	1 cut(s)	990
PspGI	CCWGG	1 cut(s)	1281
PspN4I	GGNNCC	3 cut(s)	630, 1254, 1287
PstNI	CAGNNNCTG	2 cut(s)	656, 896
PsuI	RGATCY	1 cut(s)	1252
PvuII	CAGCTG	3 cut(s)	374, 734, 896
RsaI	GTAC	3 cut(s)	206, 630, 1091
RsaNI	GTAC	3 cut(s)	205, 629, 1090
SaqAI	TTAA	3 cut(s)	102, 111, 854
Sau3AI	GATC	2 cut(s)	745, 1252
SchI	GAGTC	5 cut(s)	59, 542, 774, 870, 1061
ScrFI	CCNGG	2 cut(s)	287, 1283
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	2 cut(s)	82, 353
SfcI	CTRYAG	1 cut(s)	505
Sse9I	AATT	7 cut(s)	467, 574, 851, 910, 916, 1072, 1099
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	4 cut(s)	81, 318, 323, 921
StyD4I	CCNGG	2 cut(s)	285, 1281
TaaI	ACNGT	3 cut(s)	209, 556, 610
TaiI	ACGT	3 cut(s)	317, 873, 1148
TaqI	TCGA	2 cut(s)	182, 783
TaqII	GACCGA	2 cut(s)	201, 404
TasI	AATT	7 cut(s)	467, 574, 851, 910, 916, 1072, 1099
TatI	WGTACW	1 cut(s)	1089
TauI	GCSGC	7 cut(s)	45, 139, 142, 800, 803, 955, 958
TfiI	GAWTC	5 cut(s)	476, 653, 831, 1219, 1258
Tru1I	TTAA	3 cut(s)	102, 111, 854
Tru9I	TTAA	3 cut(s)	102, 111, 854
TseFI	GTSAC	3 cut(s)	556, 1113, 1296
TseI	GCWGC	8 cut(s)	276, 374, 731, 758, 821, 893, 949, 1243
Tsp45I	GTSAC	3 cut(s)	556, 1113, 1296
TspDTI	ATGAA	7 cut(s)	339, 460, 528, 651, 831, 992, 1182
TspGWI	ACGGA	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	472
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	3 cut(s)	574, 916, 1072
XbaI	TCTAGA	1 cut(s)	920
XceI	RCATGY	1 cut(s)	173
XspI	CTAG	4 cut(s)	81, 318, 323, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.