Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013610

Physical Location & Seq

Genomic Coordinates Forward (+)

4960821 .. 4963270

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1030800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGTGCTTACTGAAGGTGGCGAACCAGAGGAGCTCAGGAGGCGGCGGTCAATACGACAGGTTTGGCTCTCAAAACGATAGTACCGATGTTACTGCTGTAGATATTGATAATATCAACTACGGCGGCGTAGGATTGGAGTCGCCGCCGCCGTATCATCAACAGCACGTGTCGCTGTCGACGCCGACAATGTTTTTGGGGTACAGTCAGGCGGCAACGGAGATGTCGGCGATGGTGTCGGCTTTGACGCATGTCGTTTCCGGACAGAGAGGCAGCGACAGCTGGGGACATGTTGGAAGCGGTGGAGTTACGTCTAGTTTCGGCCAACTTTATTCTTCTTCATTTCCATCTGCTTCTCCTTTGTCAGCTGCTTTTTCTTCAAGTGCTTCTCCTGGTTCTCACAATTGGGTCGGTCAAAAGAGAGGGCGCGAAGAAGATTTGGATTCTGCTTCTGCTTCTGCTTCTGCTCAAACCCAATTCATGGAATCTGGTAATAGAGCTTTTAGGGGTGGCTATAGTGATTACAGAGGAACACAATCAGAGTCTCCATCTGGTGGTGCAAGTGCAACTGTGACAGAAGAAAGTACAAATTTTTCCACCGCCACCGTCTCGGCCACCACAGCGGTACCAACCACACCATCAAGTACAGAATCTGTTTCATTTGAAGAAACTGGTGAGAGGAAGAGAAGATACAGGGGAGTTAGACAGAGGCCCTGGGGAAAATGGGCAGCTGAGATACGCGATCCACACAAAGCTGCAAGAGTCTGGCTTGGCACATTCGACACGGCGGAGGCAGCCGCCCGAGCCTACGATGAAGCTGCTCTAAGATTCAGAGGAAACAGAGCTAAACTAAACTTCCCAGAAAACGTCAGACTCGTTCAACCACCACCACCACCACCAACTCTCCAAACCTTCAATTCAAATTCTAGACCAACACAATATGCTCAGCCGTTGCAGCCACCGCCGCTTCCACAACCACCACAACAGCAGCTCTATCACTCCCAGCCAGCTTTTCAACCCTCCTCCGACCTCCTCCGAGATTACTTCGACTACTCTCAGCTCCTTCAAAGCTCCGCTGACTTCCATCCACAGCAGCAACAACAACAGCAACCCTCAAGTTTGCTGCAAAAAATGTACTACAATTCCCAGTTGGCGTCACTTCAATCTTCTTTTCTACAACCTGCATCGGCATCCACTCCATCTTCTGCATTGCCGTCCTCTGCCTCCTCCTCTGCTTCATTTCCTCTGTTTTTCTCTGAGCAGAATCAGCAAATGGGTTTTTTCCGGCAGCCGCAGAATCCGAACCAGGGTGGTCCGTCTGATTTCCAGGCACCATCTTGGTCTCATTCCGGCAACAATCCATCCTCATCCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034284 GO:0040034 GO:0042221 GO:0043207 GO:0045893 GO:0045935 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

458

Amino Acids

49.25

Weight (kDa)

6.31

Isoelectric Point (pI)

67.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	229 - 278	1.1e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13240 FvH4_2g13240
malus_domestica	MD05G1030800.v1.1 MD10G1032000.v1.1
prunus_persica	Prupe.8G037900_v2.0.a1
pyrus_communis	pycom05g02190 pycom10g02050
rosa_chinensis	RchiOBHm_Chr6g0274591
rosa_laevigata	RLG00000013534
rosa_multiflora	Rmu_sc0006850.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194100
rosa_rugosa	Rorug06G0082400 Rorug06G0082500
rosa_samantha	Rh6AG198800 Rh6BG202000 Rh6CG202700 Rh6DG193800
rosa_wichuraiana	Rw6G017280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1186
Acc65I	GGTACC	1 cut(s)	622
AccB1I	GGYRCC	2 cut(s)	622, 1327
AccB7I	CCANNNNNTGG	2 cut(s)	478, 551
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	2 cut(s)	426, 738
AccIII	TCCGGA	1 cut(s)	257
AclWI	GGATC	1 cut(s)	734
AcoI	YGGCCR	2 cut(s)	319, 609
AcsI	RAATTY	2 cut(s)	586, 919
AcuI	CTGAAG	1 cut(s)	32
AcvI	CACGTG	1 cut(s)	166
AcyI	GRCGYC	2 cut(s)	179, 1151
AfaI	GTAC	6 cut(s)	82, 200, 583, 624, 643, 1133
AfiI	CCNNNNNNNGG	3 cut(s)	478, 551, 1304
AflIII	ACRYGT	2 cut(s)	165, 286
AgsI	TTSAA	8 cut(s)	378, 662, 878, 913, 918, 1013, 1064, 1160
AjnI	CCWGG	4 cut(s)	388, 710, 1302, 1323
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	3 cut(s)	546, 610, 1344
AlwI	GGATC	1 cut(s)	734
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	798
Aor13HI	TCCGGA	1 cut(s)	257
AoxI	GGCC	3 cut(s)	319, 609, 707
ApoI	RAATTY	2 cut(s)	586, 919
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
Asp718I	GGTACC	1 cut(s)	622
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	2 cut(s)	708, 1310
AsuHPI	GGTGA	1 cut(s)	683
AvaI	CYCGRG	1 cut(s)	798
AvaII	GGWCC	1 cut(s)	1310
BaeI	ACNNNNGTAYC	4 cut(s)	64, 97, 606, 639
BanI	GGYRCC	2 cut(s)	622, 1327
BanII	GRGCYC	1 cut(s)	35
BarI	GAAGNNNNNNTAC	2 cut(s)	671, 703
BbrPI	CACGTG	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	35
BccI	CCATC	8 cut(s)	223, 352, 553, 643, 1089, 1204, 1339, 1366
BceAI	ACGGC	5 cut(s)	133, 136, 798, 931, 1195
BcgI	CGANNNNNNTGC	4 cut(s)	74, 108, 797, 831
BciT130I	CCWGG	4 cut(s)	390, 712, 1304, 1325
BcoDI	GTCTC	3 cut(s)	546, 610, 1344
BfaI	CTAG	2 cut(s)	312, 924
BfmI	CTRYAG	2 cut(s)	96, 511
BfuAI	ACCTGC	1 cut(s)	1186
BlpI	GCTNAGC	1 cut(s)	942
Bme1390I	CCNGG	4 cut(s)	390, 712, 1304, 1325
Bme18I	GGWCC	1 cut(s)	1310
BmeT110I	CYCGRG	1 cut(s)	798
BmgT120I	GGNCC	2 cut(s)	708, 1310
BmiI	GGNNCC	2 cut(s)	624, 1329
BmrFI	CCNGG	4 cut(s)	390, 712, 1304, 1325
BmrI	ACTGGG	1 cut(s)	1138
BmsI	GCATC	2 cut(s)	1190, 1196
BmuI	ACTGGG	1 cut(s)	1138
BoxI	GACNNNNGTC	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	942
BpuEI	CTTGAG	1 cut(s)	1096
BsaAI	YACGTR	1 cut(s)	166
BsaHI	GRCGYC	2 cut(s)	179, 1151
BsaI	GGTCTC	1 cut(s)	1344
BsaJI	CCNNGG	3 cut(s)	710, 711, 1303
BsaWI	WCCGGW	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	885, 915
Bsc4I	CCNNNNNNNGG	3 cut(s)	478, 551, 1304
Bse1I	ACTGG	3 cut(s)	673, 1144, 1368
Bse3DI	GCAATG	1 cut(s)	1205
BseAI	TCCGGA	1 cut(s)	257
BseBI	CCWGG	4 cut(s)	390, 712, 1304, 1325
BseDI	CCNNGG	3 cut(s)	710, 711, 1303
BseGI	GGATG	4 cut(s)	1081, 1187, 1358, 1364
BseLI	CCNNNNNNNGG	3 cut(s)	478, 551, 1304
BseMI	GCAATG	1 cut(s)	1205
BseMII	CTCAG	5 cut(s)	48, 720, 956, 1067, 1245
BseNI	ACTGG	3 cut(s)	673, 1144, 1368
BseRI	GAGGAG	5 cut(s)	43, 1009, 1019, 1213, 1216
BseYI	CCCAGC	2 cut(s)	279, 999
Bsh1236I	CGCG	2 cut(s)	426, 738
BshFI	GGCC	3 cut(s)	321, 611, 709
BshNI	GGYRCC	2 cut(s)	622, 1327
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	798
BsiSI	CCGG	3 cut(s)	258, 1282, 1347
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	3 cut(s)	478, 551, 1304
BsmAI	GTCTC	3 cut(s)	546, 610, 1344
BsmBI	CGTCTC	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	3 cut(s)	321, 611, 709
Bso31I	GGTCTC	1 cut(s)	1344
BsoBI	CYCGRG	1 cut(s)	798
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp13I	TCCGGA	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	739
Bsp1720I	GCTNAGC	1 cut(s)	942
BspANI	GGCC	3 cut(s)	321, 611, 709
BspCNI	CTCAG	5 cut(s)	47, 721, 955, 1066, 1246
BspEI	TCCGGA	1 cut(s)	257
BspFNI	CGCG	2 cut(s)	426, 738
BspLI	GGNNCC	2 cut(s)	624, 1329
BspMI	ACCTGC	1 cut(s)	1186
BspPI	GGATC	1 cut(s)	734
BspT107I	GGYRCC	2 cut(s)	622, 1327
BspTNI	GGTCTC	1 cut(s)	1344
BsrDI	GCAATG	1 cut(s)	1205
BsrI	ACTGG	3 cut(s)	673, 1144, 1368
BssECI	CCNNGG	3 cut(s)	710, 711, 1303
BssMI	GATC	1 cut(s)	739
BssNI	GRCGYC	2 cut(s)	179, 1151
Bst2UI	CCWGG	4 cut(s)	390, 712, 1304, 1325
Bst4CI	ACNGT	3 cut(s)	203, 568, 604
Bst6I	CTCTTC	1 cut(s)	674
BstACI	GRCGYC	2 cut(s)	179, 1151
BstBAI	YACGTR	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	1005
BstDEI	CTNAG	6 cut(s)	34, 729, 821, 942, 1053, 1254
BstF5I	GGATG	4 cut(s)	1081, 1187, 1358, 1364
BstFNI	CGCG	2 cut(s)	426, 738
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	1 cut(s)	742
BstMAI	GTCTC	3 cut(s)	546, 610, 1344
BstMBI	GATC	1 cut(s)	739
BstNI	CCWGG	4 cut(s)	390, 712, 1304, 1325
BstNSI	RCATGY	2 cut(s)	251, 290
BstPAI	GACNNNNGTC	1 cut(s)	248
BstSCI	CCNGG	4 cut(s)	388, 710, 1302, 1323
BstSFI	CTRYAG	2 cut(s)	96, 511
BstUI	CGCG	2 cut(s)	426, 738
BsuRI	GGCC	3 cut(s)	321, 611, 709
BtgZI	GCGATG	1 cut(s)	242
BtsCI	GGATG	4 cut(s)	1081, 1187, 1358, 1364
BveI	ACCTGC	1 cut(s)	1186
Cac8I	GCNNGC	1 cut(s)	1005
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	2 cut(s)	708, 1310
CseI	GACGC	3 cut(s)	187, 253, 1140
Csp6I	GTAC	6 cut(s)	81, 199, 582, 623, 642, 1132
CviAII	CATG	3 cut(s)	248, 287, 478
CviQI	GTAC	6 cut(s)	81, 199, 582, 623, 642, 1132
DdeI	CTNAG	6 cut(s)	34, 729, 821, 942, 1053, 1254
DpnI	GATC	1 cut(s)	741
DpnII	GATC	1 cut(s)	739
EaeI	YGGCCR	2 cut(s)	319, 609
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
EciI	GGCGGA	1 cut(s)	800
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	1344
Eco47I	GGWCC	1 cut(s)	1310
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	32
Eco72I	CACGTG	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	798
EcoICRI	GAGCTC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	708
EcoRII	CCWGG	4 cut(s)	388, 710, 1302, 1323
EcoT38I	GRGCYC	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	610
FaeI	CATG	3 cut(s)	251, 290, 481
FaiI	YATR	5 cut(s)	249, 288, 479, 513, 939
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	3 cut(s)	247, 286, 477
FblI	GTMKAC	1 cut(s)	176
FokI	GGATG	4 cut(s)	1068, 1174, 1345, 1351
FriOI	GRGCYC	1 cut(s)	35
FspBI	CTAG	2 cut(s)	312, 924
GlaI	GCGC	1 cut(s)	425
GsaI	CCCAGC	2 cut(s)	283, 1003
HaeIII	GGCC	3 cut(s)	321, 611, 709
HapII	CCGG	3 cut(s)	258, 1282, 1347
HgaI	GACGC	3 cut(s)	187, 253, 1140
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	2 cut(s)	179, 1151
Hin1II	CATG	3 cut(s)	251, 290, 481
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HpaII	CCGG	3 cut(s)	258, 1282, 1347
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	8 cut(s)	538, 830, 869, 1024, 1034, 1255, 1299, 1318
Hpy188III	TCNNGA	3 cut(s)	36, 258, 924
Hpy8I	GTNNAC	1 cut(s)	177
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	7, 919, 1070
HpyCH4III	ACNGT	3 cut(s)	203, 568, 604
HpyCH4IV	ACGT	3 cut(s)	165, 308, 864
HpyCH4V	TGCA	7 cut(s)	557, 563, 755, 952, 1123, 1181, 1205
HpyF3I	CTNAG	6 cut(s)	34, 729, 821, 942, 1053, 1254
HpySE526I	ACGT	3 cut(s)	165, 308, 864
Hsp92I	GRCGYC	2 cut(s)	179, 1151
Hsp92II	CATG	3 cut(s)	251, 290, 481
HspAI	GCGC	1 cut(s)	424
Kpn2I	TCCGGA	1 cut(s)	257
KpnI	GGTACC	1 cut(s)	626
Kzo9I	GATC	1 cut(s)	739
LmnI	GCTCC	3 cut(s)	30, 1062, 1073
LweI	GCATC	2 cut(s)	1190, 1196
MaeI	CTAG	2 cut(s)	312, 924
MaeII	ACGT	3 cut(s)	165, 308, 864
MaeIII	GTNAC	4 cut(s)	88, 304, 568, 1152
MalI	GATC	1 cut(s)	741
MboI	GATC	1 cut(s)	739
MfeI	CAATTG	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	6 cut(s)	400, 473, 586, 913, 919, 1138
MlyI	GAGTC	4 cut(s)	146, 548, 768, 864
MmeI	TCCRAC	2 cut(s)	271, 1047
MroI	TCCGGA	1 cut(s)	257
MspA1I	CMGCKG	5 cut(s)	279, 365, 620, 728, 1073
MspI	CCGG	3 cut(s)	258, 1282, 1347
MspR9I	CCNGG	4 cut(s)	390, 712, 1304, 1325
MunI	CAATTG	1 cut(s)	400
MvaI	CCWGG	4 cut(s)	390, 712, 1304, 1325
MvnI	CGCG	2 cut(s)	426, 738
NdeII	GATC	1 cut(s)	739
NlaIII	CATG	3 cut(s)	251, 290, 481
NlaIV	GGNNCC	2 cut(s)	624, 1329
NmeAIII	GCCGAG	1 cut(s)	587
NmuCI	GTSAC	2 cut(s)	568, 1152
NspI	RCATGY	2 cut(s)	251, 290
PasI	CCCWGGG	1 cut(s)	711
PciI	ACATGT	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 146, 870
PfeI	GAWTC	6 cut(s)	440, 482, 647, 825, 1261, 1294
PflMI	CCANNNNNTGG	2 cut(s)	478, 551
PleI	GAGTC	4 cut(s)	145, 547, 767, 864
PmaCI	CACGTG	1 cut(s)	166
PmlI	CACGTG	1 cut(s)	166
PpsI	GAGTC	4 cut(s)	145, 547, 767, 864
Ppu21I	YACGTR	1 cut(s)	166
PscI	ACATGT	1 cut(s)	286
PshAI	GACNNNNGTC	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	4 cut(s)	388, 710, 1302, 1323
PspCI	CACGTG	1 cut(s)	166
PspFI	CCCAGC	2 cut(s)	279, 999
PspGI	CCWGG	4 cut(s)	388, 710, 1302, 1323
PspN4I	GGNNCC	2 cut(s)	624, 1329
PspPI	GGNCC	2 cut(s)	708, 1310
PstNI	CAGNNNCTG	1 cut(s)	650
PvuII	CAGCTG	3 cut(s)	279, 365, 728
RsaI	GTAC	6 cut(s)	82, 200, 583, 624, 643, 1133
RsaNI	GTAC	6 cut(s)	81, 199, 582, 623, 642, 1132
SacI	GAGCTC	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	739
Sau96I	GGNCC	2 cut(s)	708, 1310
SchI	GAGTC	4 cut(s)	146, 548, 768, 864
ScrFI	CCNGG	4 cut(s)	390, 712, 1304, 1325
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	2 cut(s)	1190, 1196
SfcI	CTRYAG	2 cut(s)	96, 511
SinI	GGWCC	1 cut(s)	1310
SmlI	CTYRAG	1 cut(s)	1111
SmoI	CTYRAG	1 cut(s)	1111
Sse9I	AATT	6 cut(s)	400, 473, 586, 913, 919, 1138
SspMI	CTAG	2 cut(s)	312, 924
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	4 cut(s)	388, 710, 1302, 1323
TaaI	ACNGT	3 cut(s)	203, 568, 604
TaiI	ACGT	3 cut(s)	168, 311, 867
TaqI	TCGA	3 cut(s)	176, 777, 1044
TaqII	GACCGA	1 cut(s)	398
TasI	AATT	6 cut(s)	400, 473, 586, 913, 919, 1138
TatI	WGTACW	3 cut(s)	581, 641, 1131
TauI	GCSGC	8 cut(s)	45, 126, 145, 148, 212, 797, 964, 1291
TfiI	GAWTC	6 cut(s)	440, 482, 647, 825, 1261, 1294
TseFI	GTSAC	2 cut(s)	568, 1152
Tsp45I	GTSAC	2 cut(s)	568, 1152
TspDTI	ATGAA	5 cut(s)	327, 466, 645, 825, 1224
TspGWI	ACGGA	2 cut(s)	230, 1302
Van91I	CCANNNNNTGG	2 cut(s)	478, 551
VpaK11BI	GGWCC	1 cut(s)	1310
XapI	RAATTY	2 cut(s)	586, 919
XbaI	TCTAGA	1 cut(s)	923
XceI	RCATGY	2 cut(s)	251, 290
XmiI	GTMKAC	1 cut(s)	176
XspI	CTAG	2 cut(s)	312, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.