Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013610

Physical Location & Seq

Genomic Coordinates Reverse (-)

10964093 .. 10964368

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0082400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGCCAATTTCCTTGGCTACGACGTCTACGATCTCGACCTCTCTAGGGTTAAAGACGACTCGGAGTTGAAGATGCTTCTTTTACAGACCACGAGCAAGTCGGTGATCCTCATTGAGGACCTGGATCGGTTCTTCGCCGAGAAATCGACGGCGGTCAGCTTCTCCGGCATATCGAACTTCATGGACGGCTTGCTCAAATCGTGCTGCGCTGAAGAGAGAGTCATGACGAGGTTGATGAGATTTGGAGCCTCTGCGCTTTCGTTGTGTTGGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009787 GO:0009788 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034284 GO:0040034 GO:0042221 GO:0043207 GO:0045893 GO:0045935 GO:0048506 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0098542 GO:0140110 GO:1901419 GO:1901420 GO:1901700 GO:1902074 GO:1902680 GO:1903506 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

91

Amino Acids

10.26

Weight (kDa)

4.76

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013610)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g13240 FvH4_2g13240
malus_domestica	MD05G1030800.v1.1 MD10G1032000.v1.1
prunus_persica	Prupe.8G037900_v2.0.a1
pyrus_communis	pycom05g02190 pycom10g02050
rosa_chinensis	RchiOBHm_Chr6g0274591
rosa_laevigata	RLG00000013534
rosa_multiflora	Rmu_sc0006850.1_g000002
rosa_roxburghii	Rroxscaffold_7G00194100
rosa_rugosa	Rorug06G0082400 Rorug06G0082500
rosa_samantha	Rh6AG198800 Rh6BG202000 Rh6CG202700 Rh6DG193800
rosa_wichuraiana	Rw6G017280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	27
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	2 cut(s)	100, 132
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	46, 115
AgsI	TTSAA	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
AlwI	GGATC	2 cut(s)	100, 132
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	204
AspLEI	GCGC	2 cut(s)	209, 256
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	191
BceAI	ACGGC	2 cut(s)	165, 202
BciT130I	CCWGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	45
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	63
BoxI	GACNNNNGTC	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 115
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	46, 115
BseXI	GCAGC	1 cut(s)	191
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	46, 115
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	31, 105, 124
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	247
BspPI	GGATC	2 cut(s)	100, 132
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	3 cut(s)	31, 105, 124
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	209, 256
BstKTI	GATC	3 cut(s)	34, 108, 127
BstMBI	GATC	3 cut(s)	31, 105, 124
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	122
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	191
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	2 cut(s)	209, 256
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	2 cut(s)	181, 223
CviJI	RGCY	5 cut(s)	5, 18, 159, 189, 248
CviKI_1	RGCY	5 cut(s)	5, 18, 159, 189, 248
DpnI	GATC	3 cut(s)	33, 107, 126
DpnII	GATC	3 cut(s)	31, 105, 124
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	184, 226
FaiI	YATR	4 cut(s)	170, 182, 224, 274
FatI	CATG	2 cut(s)	180, 222
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	205
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	45
GlaI	GCGC	2 cut(s)	208, 255
GluI	GCNGC	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	165
HhaI	GCGC	2 cut(s)	209, 256
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	2 cut(s)	184, 226
Hin6I	GCGC	2 cut(s)	207, 254
HinP1I	GCGC	2 cut(s)	207, 254
HinfI	GANTC	2 cut(s)	59, 219
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	35, 223
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	2 cut(s)	26, 151
HpyCH4IV	ACGT	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	184, 226
HspAI	GCGC	2 cut(s)	207, 254
Kzo9I	GATC	3 cut(s)	31, 105, 124
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	3 cut(s)	107, 134, 178
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	1 cut(s)	24
MalI	GATC	3 cut(s)	33, 107, 126
MboI	GATC	3 cut(s)	31, 105, 124
MboII	GAAGA	3 cut(s)	82, 124, 224
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	53, 228
MnlI	CCTC	5 cut(s)	50, 109, 119, 222, 259
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	165
NdeII	GATC	3 cut(s)	31, 105, 124
NlaIII	CATG	2 cut(s)	184, 226
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	163
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	2 cut(s)	53, 227
PpsI	GAGTC	2 cut(s)	53, 227
PpuMI	RGGWCCY	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	118
PspPPI	RGGWCCY	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	3 cut(s)	31, 105, 124
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	2 cut(s)	53, 228
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	5 cut(s)	27, 42, 123, 161, 233
SfaNI	GCATC	1 cut(s)	63
SinI	GGWCC	1 cut(s)	118
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	1 cut(s)	152
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	13
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	3 cut(s)	36, 146, 173
TasI	AATT	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	118
XagI	CCTNNNNNAGG	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	45
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.