FvH4_2g13310

Ran guanine nucleotide release

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014591
Physical Location & Seq
Forward (+)
11625800 .. 11628243
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13310.t1

Sequence Viewer

Length: 612 bp
ATGGCTCAGGAGAAGTACTCTCAGCACTCTTTGTTCGGCGGCGCCATTTCTAGCCTCTTTCCTGATCGATTTCAGGATGTGAGCGATGATGTCCGTGAGGTTCCTGATCACCAGGAGGCGTTTGTGGACCCGGCCCGCGACGAGAGCTTGATCTTTGAGCTGTTGGATTTGAAGCCTGAAGTTGGGGACAATGGAAGTGCTACCTGGTTTCTTCAGGACCTTGCTACTGAACAGGAGGCTGAGGGAAGTGTGTTGATTGAGCAGTCGGGAGTAGTGGAGGTCCCTGGACTAAGTTACGGAAATATACCTGCTGTTGTTACAACTGCAGTTGGCCAAATGGCCATCTCCAAGGAGCGACAAGGAAGGGATGCACAAAATACCGTGAGGGTCTATGTGGCAAATCTACGACTTAAGGGAGTTTCTACAGATGTGCTAATTACTGCATATGAACCCATTCATATCAATCCTTTGAGCGAAAGTGCTAGCACAGTCGGCTCCAGTAATGCTGCTCCAGCATTACATTCTGGGCACGTGCCAATGGTTGAAGTCTTCAGACTTGCCATCTCAAGCTTCAAAGTCAGTGACTGGAATCTCTTTGGTTCTGGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mog1

Protein Analysis

204

Amino Acids

21.9

Weight (kDa)

4.53

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mog1 PF04603 10 - 151 3.6e-37 Ran-interacting Mog1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69680
fragaria_vesca FvH4_2g13310 FvH4_4g31510
malus_domestica MD13G1073400.v1.1 MD16G1074700.v1.1
prunus_persica Prupe.1G272700_v2.0.a1
pyrus_communis pycom13g06570
rosa_chinensis RchiOBHm_Chr4g0440001
rosa_laevigata RLG00000006216
rosa_multiflora Rmu_sc0006000.1_g000008
rosa_roxburghii Rroxscaffold_5G00380950
rosa_rugosa Rorug04G0323100 Rorug04G0323200
rosa_samantha Rh4BG386500 Rh4CG401000 Rh4DG380800
rosa_wichuraiana Rw4G032010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 39, 136
AcoI YGGCCR 2 cut(s) 331, 339
AcuI CTGAAG 3 cut(s) 197, 198, 535
AcvI CACGTG 1 cut(s) 532
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 182
AflII CTTAAG 1 cut(s) 410
AgsI TTSAA 3 cut(s) 172, 545, 574
AjnI CCWGG 3 cut(s) 111, 203, 283
AluBI AGCT 3 cut(s) 147, 160, 570
AluI AGCT 3 cut(s) 147, 160, 570
AlwNI CAGNNNCTG 1 cut(s) 585
AoxI GGCC 4 cut(s) 132, 331, 339, 605
ApeKI GCWGC 1 cut(s) 506
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 5 cut(s) 127, 133, 217, 280, 605
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 101
AsuNHI GCTAGC 1 cut(s) 482
AvaII GGWCC 3 cut(s) 127, 217, 280
BaeGI GKGCMC 1 cut(s) 531
BalI TGGCCA 2 cut(s) 333, 341
BanI GGYRCC 1 cut(s) 41
BbrPI CACGTG 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 541
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 493
BccI CCATC 2 cut(s) 350, 569
BciT130I CCWGG 3 cut(s) 113, 205, 285
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 2 cut(s) 51, 483
BfmI CTRYAG 2 cut(s) 324, 423
BfoI RGCGCY 1 cut(s) 45
BfrI CTTAAG 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 316
BisI GCNGC 2 cut(s) 40, 507
BlsI GCNGC 2 cut(s) 41, 508
BmcAI AGTACT 1 cut(s) 17
Bme1390I CCNGG 4 cut(s) 113, 131, 205, 285
Bme18I GGWCC 3 cut(s) 127, 217, 280
BmgT120I GGNCC 5 cut(s) 127, 133, 217, 280, 605
BmiI GGNNCC 5 cut(s) 43, 102, 129, 282, 496
BmrFI CCNGG 4 cut(s) 113, 131, 205, 285
BmsI GCATC 1 cut(s) 358
BmtI GCTAGC 1 cut(s) 486
BpiI GAAGAC 1 cut(s) 541
BplI GAGNNNNNCTC 1 cut(s) 34
BpmI CTGGAG 2 cut(s) 481, 495
Bpu10I CCTNAGC 2 cut(s) 6, 240
BpuEI CTTGAG 1 cut(s) 550
BpuMI CCSGG 1 cut(s) 131
Bsa29I ATCGAT 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 532
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 2 cut(s) 283, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 498, 590
BseBI CCWGG 3 cut(s) 113, 205, 285
BseCI ATCGAT 1 cut(s) 67
BseDI CCNNGG 2 cut(s) 283, 348
BseGI GGATG 2 cut(s) 82, 373
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 3 cut(s) 20, 35, 231
BseNI ACTGG 2 cut(s) 498, 590
BseSI GKGCMC 1 cut(s) 531
BseXI GCAGC 1 cut(s) 493
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 4 cut(s) 134, 333, 341, 607
BshNI GGYRCC 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 67
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 2 cut(s) 200, 266
BslI CCNNNNNNNGG 1 cut(s) 182
BsmFI GGGAC 2 cut(s) 200, 266
BsnI GGCC 4 cut(s) 134, 333, 341, 607
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 3 cut(s) 64, 106, 150
BspACI CCGC 2 cut(s) 39, 136
BspANI GGCC 4 cut(s) 134, 333, 341, 607
BspCNI CTCAG 3 cut(s) 19, 34, 232
BspDI ATCGAT 1 cut(s) 67
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 5 cut(s) 43, 102, 129, 282, 496
BspMAI CTGCAG 1 cut(s) 328
BspMI ACCTGC 1 cut(s) 316
BspOI GCTAGC 1 cut(s) 486
BspT107I GGYRCC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 410
BsrI ACTGG 2 cut(s) 498, 590
BssECI CCNNGG 2 cut(s) 283, 348
BssMI GATC 3 cut(s) 64, 106, 150
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 348
Bst2UI CCWGG 3 cut(s) 113, 205, 285
Bst4CI ACNGT 2 cut(s) 382, 490
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 532
BstC8I GCNNGC 2 cut(s) 136, 484
BstDEI CTNAG 4 cut(s) 6, 21, 240, 290
BstF5I GGATG 2 cut(s) 82, 373
BstFNI CGCG 1 cut(s) 138
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 3 cut(s) 67, 109, 153
BstMBI GATC 3 cut(s) 64, 106, 150
BstMWI GCNNNNNNNGC 3 cut(s) 144, 492, 512
BstNI CCWGG 3 cut(s) 113, 205, 285
BstSCI CCNGG 4 cut(s) 111, 129, 203, 283
BstSFI CTRYAG 2 cut(s) 324, 423
BstSLI GKGCMC 1 cut(s) 531
BstUI CGCG 1 cut(s) 138
BstV1I GCAGC 1 cut(s) 493
BstV2I GAAGAC 1 cut(s) 541
Bsu15I ATCGAT 1 cut(s) 67
BsuRI GGCC 4 cut(s) 134, 333, 341, 607
BsuTUI ATCGAT 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 82, 373
BtsIMutI CAGTG 1 cut(s) 586
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 136, 484
CaiI CAGNNNCTG 1 cut(s) 585
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 5 cut(s) 127, 133, 217, 280, 605
ClaI ATCGAT 1 cut(s) 67
CsiI ACCWGGT 1 cut(s) 203
Csp6I GTAC 1 cut(s) 16
CviAII CATG 1 cut(s) 609
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 4 cut(s) 6, 21, 240, 290
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 66, 108, 152
DpnII GATC 3 cut(s) 64, 106, 150
EaeI YGGCCR 2 cut(s) 331, 339
Eco130I CCWWGG 1 cut(s) 348
Eco47I GGWCC 3 cut(s) 127, 217, 280
Eco57I CTGAAG 3 cut(s) 197, 198, 535
Eco72I CACGTG 1 cut(s) 532
EcoO109I RGGNCCY 2 cut(s) 217, 280
EcoRII CCWGG 3 cut(s) 111, 203, 283
EcoT14I CCWWGG 1 cut(s) 348
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 612
FaiI YATR 6 cut(s) 305, 393, 445, 447, 459, 610
FaqI GGGAC 2 cut(s) 200, 266
FatI CATG 1 cut(s) 608
FauI CCCGC 1 cut(s) 143
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 40, 507
FokI GGATG 2 cut(s) 89, 380
Fsp4HI GCNGC 2 cut(s) 40, 507
FspBI CTAG 2 cut(s) 51, 483
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 40, 507
GsuI CTGGAG 2 cut(s) 481, 495
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 4 cut(s) 134, 333, 341, 607
HapII CCGG 1 cut(s) 131
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 1 cut(s) 612
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HindIII AAGCTT 1 cut(s) 568
HinfI GANTC 1 cut(s) 589
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 554
Hpy188III TCNNGA 6 cut(s) 8, 62, 74, 104, 215, 267
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 357
HpyCH4III ACNGT 2 cut(s) 382, 490
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 3 cut(s) 326, 371, 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 144, 492, 512
HpyF3I CTNAG 4 cut(s) 6, 21, 240, 290
HpySE526I ACGT 1 cut(s) 531
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 1 cut(s) 612
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 3 cut(s) 64, 106, 150
LmnI GCTCC 3 cut(s) 352, 500, 514
Lsp1109I GCAGC 1 cut(s) 493
LweI GCATC 1 cut(s) 358
MabI ACCWGGT 1 cut(s) 203
MaeI CTAG 2 cut(s) 51, 483
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 3 cut(s) 293, 316, 581
MalI GATC 3 cut(s) 66, 108, 152
MboI GATC 3 cut(s) 64, 106, 150
MboII GAAGA 2 cut(s) 203, 541
MhlI GDGCHC 1 cut(s) 531
MlsI TGGCCA 2 cut(s) 333, 341
MluCI AATT 1 cut(s) 435
MluNI TGGCCA 2 cut(s) 333, 341
Mly113I GGCGCC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 7 cut(s) 65, 91, 109, 229, 235, 271, 378
Mox20I TGGCCA 2 cut(s) 333, 341
MroXI GAANNNNTTC 1 cut(s) 453
MscI TGGCCA 2 cut(s) 333, 341
MseI TTAA 1 cut(s) 411
Msp20I TGGCCA 2 cut(s) 333, 341
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 4 cut(s) 113, 131, 205, 285
MvaI CCWGG 3 cut(s) 113, 205, 285
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 3 cut(s) 144, 492, 512
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 445
NdeII GATC 3 cut(s) 64, 106, 150
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 1 cut(s) 612
NlaIV GGNNCC 5 cut(s) 43, 102, 129, 282, 496
NmuCI GTSAC 1 cut(s) 581
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 1 cut(s) 589
PkrI GCNGC 2 cut(s) 41, 508
PluTI GGCGCC 1 cut(s) 45
PmaCI CACGTG 1 cut(s) 532
PmlI CACGTG 1 cut(s) 532
Ppu21I YACGTR 1 cut(s) 532
PpuMI RGGWCCY 2 cut(s) 217, 280
Psp5II RGGWCCY 2 cut(s) 217, 280
Psp6I CCWGG 3 cut(s) 111, 203, 283
PspCI CACGTG 1 cut(s) 532
PspGI CCWGG 3 cut(s) 111, 203, 283
PspN4I GGNNCC 5 cut(s) 43, 102, 129, 282, 496
PspPI GGNCC 5 cut(s) 127, 133, 217, 280, 605
PspPPI RGGWCCY 2 cut(s) 217, 280
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 585
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 2 cut(s) 40, 507
Sau3AI GATC 3 cut(s) 64, 106, 150
Sau96I GGNCC 5 cut(s) 127, 133, 217, 280, 605
ScaI AGTACT 1 cut(s) 17
ScrFI CCNGG 4 cut(s) 113, 131, 205, 285
SduI GDGCHC 1 cut(s) 531
SetI ASST 9 cut(s) 102, 149, 162, 206, 222, 282, 310, 534, 572
SexAI ACCWGGT 1 cut(s) 203
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 2 cut(s) 324, 423
SfoI GGCGCC 1 cut(s) 43
SinI GGWCC 3 cut(s) 127, 217, 280
SmlI CTYRAG 2 cut(s) 410, 565
SmoI CTYRAG 2 cut(s) 410, 565
Sse9I AATT 1 cut(s) 435
SsiI CCGC 2 cut(s) 39, 136
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 2 cut(s) 51, 483
StyD4I CCNGG 4 cut(s) 111, 129, 203, 283
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 2 cut(s) 382, 490
TaiI ACGT 1 cut(s) 534
TaqI TCGA 1 cut(s) 67
TasI AATT 1 cut(s) 435
TatI WGTACW 1 cut(s) 15
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 1 cut(s) 581
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 581
TspDTI ATGAA 2 cut(s) 446, 462
TspGWI ACGGA 2 cut(s) 83, 312
TspRI CASTG 1 cut(s) 586
Vha464I CTTAAG 1 cut(s) 410
VpaK11BI GGWCC 3 cut(s) 127, 217, 280
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 2 cut(s) 51, 483
ZrmI AGTACT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.