Rh4CG401000

Ran guanine nucleotide release

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014591
Physical Location & Seq
Forward (+)
64936004 .. 64938198
2195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG401000.1

Sequence Viewer

Length: 522 bp
ATGGCACAGGAAGTGTATTCTCAACGCGCTTTGTTCGGCGGGGCCATCTCCAGCATCATCCCTAATAGATTTCAGGATGTGAGCAATGTTCGTCAGGTTCCTGATCACCAGGAGGCATTTGTGGACCCTGCCCGCGACGAGAGCTTGATCATTGAGCTGTTGGATTTGAAGCCTGAAGTTGGGGACAATGGAAGTGCTGCCTGGTTTCTTCAGGACCTTGCCACTGAGCAAGAGGCTGAGGGAAGTGTGGCAATTTCCAAGGGGCGACAAGGAAGGGAAGCACAAAATACTGTGAGGGTCTATGTGGCAAACCTACGACTTAAGGGAGTTAATACAGATGTGCTAATTACTGCATATGAACCCATTCATATCAATCCTTTGAGCGAAAGTGCTAACACAGTCGGGGCTGGTCTTGCTGCTCCTGCATTACAATCTGGGCATGTGCCAATGGCTGAGGTCTTTAGACTCGCTGTCTCGAGCTTCAAAATCAATGACTGGAATCTCTTTGGTTCTGGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mog1

Protein Analysis

173

Amino Acids

18.69

Weight (kDa)

4.79

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mog1 PF04603 10 - 81 1.1e-25 Ran-interacting Mog1 protein
Mog1 PF04603 82 - 121 2.3e-06 Ran-interacting Mog1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69680
fragaria_vesca FvH4_2g13310 FvH4_4g31510
malus_domestica MD13G1073400.v1.1 MD16G1074700.v1.1
prunus_persica Prupe.1G272700_v2.0.a1
pyrus_communis pycom13g06570
rosa_chinensis RchiOBHm_Chr4g0440001
rosa_laevigata RLG00000006216
rosa_multiflora Rmu_sc0006000.1_g000008
rosa_roxburghii Rroxscaffold_5G00380950
rosa_rugosa Rorug04G0323100 Rorug04G0323200
rosa_samantha Rh4BG386500 Rh4CG401000 Rh4DG380800
rosa_wichuraiana Rw4G032010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 27, 135
AciI CCGC 2 cut(s) 39, 133
AcuI CTGAAG 2 cut(s) 194, 195
AfiI CCNNNNNNNGG 1 cut(s) 179
AflII CTTAAG 1 cut(s) 320
AgsI TTSAA 2 cut(s) 169, 484
AhdI GACNNNNNGTC 1 cut(s) 470
AjnI CCWGG 2 cut(s) 108, 200
AluBI AGCT 3 cut(s) 144, 157, 480
AluI AGCT 3 cut(s) 144, 157, 480
Alw26I GTCTC 1 cut(s) 478
Ama87I CYCGRG 1 cut(s) 475
AoxI GGCC 2 cut(s) 42, 515
ApeKI GCWGC 2 cut(s) 197, 416
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 4 cut(s) 42, 124, 214, 515
AsuHPI GGTGA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 475
AvaII GGWCC 2 cut(s) 124, 214
BbvCI CCTCAGC 2 cut(s) 237, 453
BbvI GCAGC 2 cut(s) 184, 403
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 110, 202
BclI TGATCA 2 cut(s) 103, 147
BcoDI GTCTC 1 cut(s) 478
BfrI CTTAAG 1 cut(s) 320
BisI GCNGC 2 cut(s) 198, 417
BlsI GCNGC 2 cut(s) 199, 418
Bme1390I CCNGG 2 cut(s) 110, 202
Bme18I GGWCC 2 cut(s) 124, 214
BmeRI GACNNNNNGTC 1 cut(s) 470
BmeT110I CYCGRG 1 cut(s) 475
BmgT120I GGNCC 4 cut(s) 42, 124, 214, 515
BmiI GGNNCC 3 cut(s) 43, 99, 126
BmrFI CCNGG 2 cut(s) 110, 202
BmsI GCATC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 34
Bpu10I CCTNAGC 2 cut(s) 237, 453
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 91
BseBI CCWGG 2 cut(s) 110, 202
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 2 cut(s) 57, 82
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 3 cut(s) 216, 228, 444
BseNI ACTGG 1 cut(s) 500
BseXI GCAGC 2 cut(s) 184, 403
Bsh1236I CGCG 2 cut(s) 27, 135
BshFI GGCC 2 cut(s) 44, 517
BsiHKCI CYCGRG 1 cut(s) 475
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 478
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 2 cut(s) 44, 517
BsoBI CYCGRG 1 cut(s) 475
Bsp143I GATC 2 cut(s) 103, 147
BspACI CCGC 2 cut(s) 39, 133
BspANI GGCC 2 cut(s) 44, 517
BspCNI CTCAG 3 cut(s) 217, 229, 445
BspFNI CGCG 2 cut(s) 27, 135
BspLI GGNNCC 3 cut(s) 43, 99, 126
BspTI CTTAAG 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 91
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 103, 147
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 110, 202
Bst4CI ACNGT 2 cut(s) 292, 400
BstAFI CTTAAG 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 225, 237, 453
BstF5I GGATG 2 cut(s) 57, 82
BstFNI CGCG 2 cut(s) 27, 135
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 106, 150
BstMAI GTCTC 1 cut(s) 478
BstMBI GATC 2 cut(s) 103, 147
BstMWI GCNNNNNNNGC 3 cut(s) 141, 413, 422
BstNI CCWGG 2 cut(s) 110, 202
BstNSI RCATGY 1 cut(s) 443
BstSCI CCNGG 2 cut(s) 108, 200
BstUI CGCG 2 cut(s) 27, 135
BstV1I GCAGC 2 cut(s) 184, 403
BsuRI GGCC 2 cut(s) 44, 517
BtsCI GGATG 2 cut(s) 57, 82
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 4 cut(s) 42, 124, 214, 515
CviAII CATG 2 cut(s) 440, 519
CviJI RGCY 9 cut(s) 44, 144, 157, 172, 236, 407, 452, 480, 517
CviKI_1 RGCY 9 cut(s) 44, 144, 157, 172, 236, 407, 452, 480, 517
DdeI CTNAG 3 cut(s) 225, 237, 453
DpnI GATC 2 cut(s) 105, 149
DpnII GATC 2 cut(s) 103, 147
DriI GACNNNNNGTC 1 cut(s) 470
Eam1105I GACNNNNNGTC 1 cut(s) 470
Eco130I CCWWGG 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 124, 214
Eco57I CTGAAG 2 cut(s) 194, 195
Eco88I CYCGRG 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 108, 200
EcoT14I CCWWGG 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 2 cut(s) 443, 522
FaiI YATR 6 cut(s) 303, 355, 357, 369, 441, 520
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 439, 518
FauI CCCGC 2 cut(s) 32, 140
FauNDI CATATG 1 cut(s) 355
FbaI TGATCA 2 cut(s) 103, 147
Fnu4HI GCNGC 2 cut(s) 198, 417
FokI GGATG 2 cut(s) 44, 89
Fsp4HI GCNGC 2 cut(s) 198, 417
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 198, 417
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 2 cut(s) 44, 517
HhaI GCGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 443, 522
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 2 cut(s) 465, 499
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 4 cut(s) 74, 101, 212, 475
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 267
HpyCH4III ACNGT 2 cut(s) 292, 400
HpyCH4V TGCA 2 cut(s) 353, 425
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 413, 422
HpyF3I CTNAG 3 cut(s) 225, 237, 453
Hsp92II CATG 2 cut(s) 443, 522
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 2 cut(s) 103, 147
Kzo9I GATC 2 cut(s) 103, 147
LmnI GCTCC 1 cut(s) 424
Lsp1109I GCAGC 2 cut(s) 184, 403
LweI GCATC 1 cut(s) 63
MalI GATC 2 cut(s) 105, 149
MboI GATC 2 cut(s) 103, 147
MboII GAAGA 1 cut(s) 200
MluCI AATT 2 cut(s) 252, 345
MlyI GAGTC 1 cut(s) 459
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 5 cut(s) 106, 226, 232, 288, 448
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 2 cut(s) 321, 330
MspCI CTTAAG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 110, 202
MvaI CCWGG 2 cut(s) 110, 202
MvnI CGCG 2 cut(s) 27, 135
MwoI GCNNNNNNNGC 3 cut(s) 141, 413, 422
NdeI CATATG 1 cut(s) 355
NdeII GATC 2 cut(s) 103, 147
NlaIII CATG 2 cut(s) 443, 522
NlaIV GGNNCC 3 cut(s) 43, 99, 126
NspI RCATGY 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 1 cut(s) 499
PkrI GCNGC 2 cut(s) 199, 418
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 108, 200
PspGI CCWGG 2 cut(s) 108, 200
PspN4I GGNNCC 3 cut(s) 43, 99, 126
PspPI GGNCC 4 cut(s) 42, 124, 214, 515
PspPPI RGGWCCY 1 cut(s) 214
SaqAI TTAA 2 cut(s) 321, 330
SatI GCNGC 2 cut(s) 198, 417
Sau3AI GATC 2 cut(s) 103, 147
Sau96I GGNCC 4 cut(s) 42, 124, 214, 515
SchI GAGTC 1 cut(s) 459
ScrFI CCNGG 2 cut(s) 110, 202
SetI ASST 7 cut(s) 99, 146, 159, 219, 315, 459, 482
SfaNI GCATC 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 475
SinI GGWCC 2 cut(s) 124, 214
SlaI CTCGAG 1 cut(s) 475
SmlI CTYRAG 2 cut(s) 320, 475
SmoI CTYRAG 2 cut(s) 320, 475
Sse9I AATT 2 cut(s) 252, 345
SsiI CCGC 2 cut(s) 39, 133
StyD4I CCNGG 2 cut(s) 108, 200
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 292, 400
TaqI TCGA 1 cut(s) 476
TasI AATT 2 cut(s) 252, 345
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 2 cut(s) 321, 330
Tru9I TTAA 2 cut(s) 321, 330
TscAI CASTG 1 cut(s) 229
TseI GCWGC 2 cut(s) 197, 416
TspDTI ATGAA 2 cut(s) 356, 372
TspRI CASTG 1 cut(s) 229
Vha464I CTTAAG 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 124, 214
XceI RCATGY 1 cut(s) 443
XhoI CTCGAG 1 cut(s) 475
XmnI GAANNNNTTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.