MD16G1074700.v1.1

Ran guanine nucleotide release

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014591
Physical Location & Seq
Forward (+)
5215947 .. 5218197
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1074700.v1.1.491

Sequence Viewer

Length: 609 bp
ATGTCCCAAGATATCTACTCCGAGCGCCCCTTGTTCGGCGGCGCCATCACTAGCACCTTCCCTCTCAGATTCGAGGATGTGAGCAACATTCGGCAAGTTCCCGATCACCAGGAGGCTTTTGTGGACCCTGCCCGGGACGAAAGCTTGATCTTTGAGCTTTTGGAATTGAAGCATGAAGTCGGCGACAATGGAAGCGCCAACTGGTTTCTTCAGGACCTTGCCACTGAGCAAGATGCTGACAGGAGCATGGTGATCGAGCAGTCTGGCGTAATTGAGGCCCCCAGATTGTGTTATAGAAACACACCTGCTGTTGTTACGACTGCTGTTGGCCAAATGGCAATTTCGAAAGGGCGGCAAGGAAGGGAAGCGCAAAATATTGTGAGGGTCTATGTAGCAAATTTGCGCCTTAAGGAAGTTAATACAGATGTGCTGATTACTGCATATGAGCCCGTTCATATAAATCCTTTGAGCGAAACTGCAAACACTGTGGGGGCTGGTTTTGCTGTTCCTGCAGTACAATCCGGGCATATGCCAGTGGCCGAGGTCTCTAAACTCGCCGTCTCTAGCTTCAGAGTCAATGACTGGAATCTTTTTGGTTCTGTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mog1

Protein Analysis

203

Amino Acids

22.17

Weight (kDa)

4.81

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mog1 PF04603 9 - 150 1.6e-41 Ran-interacting Mog1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69680
fragaria_vesca FvH4_2g13310 FvH4_4g31510
malus_domestica MD13G1073400.v1.1 MD16G1074700.v1.1
prunus_persica Prupe.1G272700_v2.0.a1
pyrus_communis pycom13g06570
rosa_chinensis RchiOBHm_Chr4g0440001
rosa_laevigata RLG00000006216
rosa_multiflora Rmu_sc0006000.1_g000008
rosa_roxburghii Rroxscaffold_5G00380950
rosa_rugosa Rorug04G0323100 Rorug04G0323200
rosa_samantha Rh4BG386500 Rh4CG401000 Rh4DG380800
rosa_wichuraiana Rw4G032010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 41
AciI CCGC 2 cut(s) 39, 352
AcoI YGGCCR 2 cut(s) 328, 537
AcsI RAATTY 1 cut(s) 397
AcuI CTGAAG 2 cut(s) 194, 553
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 516
AfiI CCNNNNNNNGG 2 cut(s) 35, 133
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 3 cut(s) 144, 157, 567
AluI AGCT 3 cut(s) 144, 157, 567
Alw26I GTCTC 2 cut(s) 550, 565
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 3 cut(s) 276, 328, 537
ApoI RAATTY 1 cut(s) 397
AspLEI GCGC 5 cut(s) 27, 44, 197, 370, 405
AspS9I GGNCC 3 cut(s) 124, 214, 277
AsuC2I CCSGG 3 cut(s) 133, 134, 523
AsuHPI GGTGA 2 cut(s) 98, 262
AsuII TTCGAA 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 2 cut(s) 124, 214
BalI TGGCCA 1 cut(s) 330
BanI GGYRCC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 450
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 542
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 1 cut(s) 110
BcnI CCSGG 3 cut(s) 133, 134, 523
BcoDI GTCTC 2 cut(s) 550, 565
BfaI CTAG 2 cut(s) 51, 564
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 3 cut(s) 28, 45, 198
BfrI CTTAAG 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 40, 353
BlsI GCNGC 2 cut(s) 41, 354
Bme1390I CCNGG 4 cut(s) 110, 133, 134, 523
Bme18I GGWCC 2 cut(s) 124, 214
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 3 cut(s) 124, 214, 277
BmiI GGNNCC 3 cut(s) 43, 126, 279
BmrFI CCNGG 4 cut(s) 110, 133, 134, 523
BmsI GCATC 1 cut(s) 223
Bpu14I TTCGAA 1 cut(s) 344
BpuMI CCSGG 3 cut(s) 133, 134, 523
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 2 cut(s) 132, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 133
Bse1I ACTGG 3 cut(s) 206, 533, 587
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 2 cut(s) 132, 540
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 35, 133
BseMII CTCAG 2 cut(s) 79, 216
BseNI ACTGG 3 cut(s) 206, 533, 587
BshFI GGCC 3 cut(s) 278, 330, 539
BshNI GGYRCC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 2 cut(s) 133, 522
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 35, 133
BsmAI GTCTC 2 cut(s) 550, 565
BsmBI CGTCTC 1 cut(s) 565
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 3 cut(s) 278, 330, 539
Bso31I GGTCTC 1 cut(s) 550
BsoBI CYCGRG 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 3 cut(s) 103, 147, 252
BspACI CCGC 2 cut(s) 39, 352
BspANI GGCC 3 cut(s) 278, 330, 539
BspCNI CTCAG 2 cut(s) 78, 217
BspLI GGNNCC 3 cut(s) 43, 126, 279
BspMAI CTGCAG 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 550
BsrI ACTGG 3 cut(s) 206, 533, 587
BssECI CCNNGG 2 cut(s) 132, 540
BssMI GATC 3 cut(s) 103, 147, 252
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 487
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 407
BstBI TTCGAA 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 65, 225
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 3 cut(s) 28, 45, 198
BstHHI GCGC 5 cut(s) 27, 44, 197, 370, 405
BstKTI GATC 3 cut(s) 106, 150, 255
BstMAI GTCTC 2 cut(s) 550, 565
BstMBI GATC 3 cut(s) 103, 147, 252
BstMWI GCNNNNNNNGC 2 cut(s) 500, 509
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 4 cut(s) 108, 131, 132, 521
BstSFI CTRYAG 1 cut(s) 510
BsuRI GGCC 3 cut(s) 278, 330, 539
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 3 cut(s) 222, 483, 540
BveI ACCTGC 1 cut(s) 313
CfoI GCGC 5 cut(s) 27, 44, 197, 370, 405
Cfr13I GGNCC 3 cut(s) 124, 214, 277
Cfr9I CCCGGG 1 cut(s) 132
Csp6I GTAC 1 cut(s) 515
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 2 cut(s) 173, 247
CviJI RGCY 9 cut(s) 116, 144, 157, 278, 330, 448, 494, 539, 567
CviKI_1 RGCY 9 cut(s) 116, 144, 157, 278, 330, 448, 494, 539, 567
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 2 cut(s) 65, 225
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 105, 149, 254
DpnII GATC 3 cut(s) 103, 147, 252
EaeI YGGCCR 2 cut(s) 328, 537
Eco24I GRGCYC 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 550
Eco32I GATATC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 124, 214
Eco57I CTGAAG 2 cut(s) 194, 553
Eco88I CYCGRG 1 cut(s) 132
EcoO109I RGGNCCY 2 cut(s) 214, 277
EcoRII CCWGG 1 cut(s) 108
EcoRV GATATC 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 450
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
Esp3I CGTCTC 1 cut(s) 565
FaeI CATG 2 cut(s) 176, 250
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 172, 246
FauNDI CATATG 2 cut(s) 442, 528
Fnu4HI GCNGC 2 cut(s) 40, 353
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 2 cut(s) 40, 353
FspBI CTAG 2 cut(s) 51, 564
GlaI GCGC 5 cut(s) 26, 43, 196, 369, 404
GluI GCNGC 2 cut(s) 40, 353
HaeII RGCGCY 3 cut(s) 28, 45, 198
HaeIII GGCC 3 cut(s) 278, 330, 539
HapII CCGG 2 cut(s) 133, 522
HhaI GCGC 5 cut(s) 27, 44, 197, 370, 405
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 2 cut(s) 176, 250
Hin6I GCGC 5 cut(s) 25, 42, 195, 368, 403
HinP1I GCGC 5 cut(s) 25, 42, 195, 368, 403
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 3 cut(s) 69, 573, 586
HpaII CCGG 2 cut(s) 133, 522
HphI GGTGA 2 cut(s) 98, 262
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 22, 68, 572
Hpy188III TCNNGA 2 cut(s) 101, 212
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 67, 354
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 3 cut(s) 440, 479, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 509
HpyF3I CTNAG 2 cut(s) 65, 225
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 2 cut(s) 176, 250
HspAI GCGC 5 cut(s) 25, 42, 195, 368, 403
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 3 cut(s) 103, 147, 252
LmnI GCTCC 1 cut(s) 243
LweI GCATC 1 cut(s) 223
MaeI CTAG 2 cut(s) 51, 564
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 105, 149, 254
MboI GATC 3 cut(s) 103, 147, 252
MboII GAAGA 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 450
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 4 cut(s) 164, 270, 339, 397
MluNI TGGCCA 1 cut(s) 330
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 1 cut(s) 582
MnlI CCTC 6 cut(s) 67, 72, 106, 268, 375, 535
Mox20I TGGCCA 1 cut(s) 330
MscI TGGCCA 1 cut(s) 330
MseI TTAA 2 cut(s) 408, 417
Msp20I TGGCCA 1 cut(s) 330
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 2 cut(s) 133, 522
MspR9I CCNGG 4 cut(s) 110, 133, 134, 523
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 500, 509
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 3 cut(s) 133, 134, 523
NdeI CATATG 2 cut(s) 442, 528
NdeII GATC 3 cut(s) 103, 147, 252
NlaIII CATG 2 cut(s) 176, 250
NlaIV GGNNCC 3 cut(s) 43, 126, 279
NmeAIII GCCGAG 1 cut(s) 565
NspV TTCGAA 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 69, 586
PkrI GCNGC 2 cut(s) 41, 354
PleI GAGTC 1 cut(s) 581
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 581
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 3 cut(s) 43, 126, 279
PspPI GGNCC 3 cut(s) 124, 214, 277
PspPPI RGGWCCY 1 cut(s) 214
PstI CTGCAG 1 cut(s) 514
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
SaqAI TTAA 2 cut(s) 408, 417
SatI GCNGC 2 cut(s) 40, 353
Sau3AI GATC 3 cut(s) 103, 147, 252
Sau96I GGNCC 3 cut(s) 124, 214, 277
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 4 cut(s) 110, 133, 134, 523
SduI GDGCHC 1 cut(s) 450
SetI ASST 7 cut(s) 59, 146, 159, 219, 307, 546, 569
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 510
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 344
SinI GGWCC 2 cut(s) 124, 214
SmaI CCCGGG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 4 cut(s) 164, 270, 339, 397
SsiI CCGC 2 cut(s) 39, 352
SspDI GGCGCC 1 cut(s) 41
SspI AATATT 1 cut(s) 376
SspMI CTAG 2 cut(s) 51, 564
StyD4I CCNGG 4 cut(s) 108, 131, 132, 521
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 3 cut(s) 72, 255, 344
TasI AATT 4 cut(s) 164, 270, 339, 397
TatI WGTACW 1 cut(s) 514
TauI GCSGC 2 cut(s) 42, 355
TfiI GAWTC 2 cut(s) 69, 586
Tru1I TTAA 2 cut(s) 408, 417
Tru9I TTAA 2 cut(s) 408, 417
TscAI CASTG 3 cut(s) 229, 490, 540
TspDTI ATGAA 2 cut(s) 189, 443
TspMI CCCGGG 1 cut(s) 132
TspRI CASTG 3 cut(s) 229, 490, 540
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 124, 214
XapI RAATTY 1 cut(s) 397
XmaI CCCGGG 1 cut(s) 132
XspI CTAG 2 cut(s) 51, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.