Rmu_sc0006000.1_g000008

Ran guanine nucleotide release

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006000.1
OG0014591
Physical Location & Seq
Forward (+)
28102 .. 30529
2428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006000.1_g000008.1.cds

Sequence Viewer

Length: 609 bp
atggcacaggaagtgtattgtcaacgcgctttgttcggcggggccatctccagcatcatccctaatagatttcaggatgtgagcaatgttcgtcaggttcctgatcaccaggaggcatttgtggaccctgcccgcgacgagagcttgatcattgagctgttggatttgaagcctgaagttggggacaatggaagtgctacctggtttcttcaggaccttgccaccgagcaagaggctgagggaagtgtggtggttgagcagtcgggagtagttgaggttcctgggctatgttacagaaacatacctgctgttgttacaactgcagttgcccaaatggcaatttccaaggggcgacaaggaagggaagcacaaaatactgtgagggtctatgtggcaaacctacgacttaagggagttaatacagatgtgctaattactgcatacgaacccattcatatcaatcctctgagcgaaagtgctaacacagtcggggccggtcttgctgctcctgcattacaatctgggcatgtgccaatggctgaggtctttagactcgctgtctcgagcttcaaaatcaatgactggaatctctttggttctgggccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mog1

Protein Analysis

202

Amino Acids

21.75

Weight (kDa)

4.76

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69680
fragaria_vesca FvH4_2g13310 FvH4_4g31510
malus_domestica MD13G1073400.v1.1 MD16G1074700.v1.1
prunus_persica Prupe.1G272700_v2.0.a1
pyrus_communis pycom13g06570
rosa_chinensis RchiOBHm_Chr4g0440001
rosa_laevigata RLG00000006216
rosa_multiflora Rmu_sc0006000.1_g000008
rosa_roxburghii Rroxscaffold_5G00380950
rosa_rugosa Rorug04G0323100 Rorug04G0323200
rosa_samantha Rh4BG386500 Rh4CG401000 Rh4DG380800
rosa_wichuraiana Rw4G032010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccII CGCG 2 cut(s) 27, 135
AciI CCGC 2 cut(s) 39, 133
AcuI CTGAAG 2 cut(s) 194, 195
AfiI CCNNNNNNNGG 1 cut(s) 179
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 2 cut(s) 169, 571
AhdI GACNNNNNGTC 1 cut(s) 557
AjnI CCWGG 3 cut(s) 108, 200, 280
AluBI AGCT 3 cut(s) 144, 157, 567
AluI AGCT 3 cut(s) 144, 157, 567
Alw26I GTCTC 1 cut(s) 565
Ama87I CYCGRG 1 cut(s) 562
AoxI GGCC 3 cut(s) 42, 492, 602
ApeKI GCWGC 1 cut(s) 503
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 5 cut(s) 42, 124, 214, 492, 602
AsuHPI GGTGA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 562
AvaII GGWCC 2 cut(s) 124, 214
BbvCI CCTCAGC 2 cut(s) 237, 540
BbvI GCAGC 1 cut(s) 490
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 3 cut(s) 110, 202, 282
BclI TGATCA 2 cut(s) 103, 147
BcoDI GTCTC 1 cut(s) 565
BfmI CTRYAG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 1 cut(s) 504
BlsI GCNGC 1 cut(s) 505
Bme1390I CCNGG 3 cut(s) 110, 202, 282
Bme18I GGWCC 2 cut(s) 124, 214
BmeRI GACNNNNNGTC 1 cut(s) 557
BmeT110I CYCGRG 1 cut(s) 562
BmgT120I GGNCC 5 cut(s) 42, 124, 214, 492, 602
BmiI GGNNCC 5 cut(s) 43, 99, 126, 279, 493
BmrFI CCNGG 3 cut(s) 110, 202, 282
BmsI GCATC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 34
Bpu10I CCTNAGC 2 cut(s) 237, 540
BsaJI CCNNGG 2 cut(s) 281, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 587
Bse3DI GCAATG 1 cut(s) 91
BseBI CCWGG 3 cut(s) 110, 202, 282
BseDI CCNNGG 2 cut(s) 281, 345
BseGI GGATG 2 cut(s) 57, 82
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 3 cut(s) 228, 458, 531
BseNI ACTGG 1 cut(s) 587
BseXI GCAGC 1 cut(s) 490
Bsh1236I CGCG 2 cut(s) 27, 135
BshFI GGCC 3 cut(s) 44, 494, 604
BsiHKCI CYCGRG 1 cut(s) 562
BsiSI CCGG 1 cut(s) 495
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 179
BsmAI GTCTC 1 cut(s) 565
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 3 cut(s) 44, 494, 604
BsoBI CYCGRG 1 cut(s) 562
Bsp143I GATC 2 cut(s) 103, 147
BspACI CCGC 2 cut(s) 39, 133
BspANI GGCC 3 cut(s) 44, 494, 604
BspCNI CTCAG 3 cut(s) 229, 459, 532
BspFNI CGCG 2 cut(s) 27, 135
BspLI GGNNCC 5 cut(s) 43, 99, 126, 279, 493
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 313
BspTI CTTAAG 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 494
BsrI ACTGG 1 cut(s) 587
BssAI RCCGGY 1 cut(s) 494
BssECI CCNNGG 2 cut(s) 281, 345
BssMI GATC 2 cut(s) 103, 147
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 3 cut(s) 110, 202, 282
Bst4CI ACNGT 2 cut(s) 379, 487
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 3 cut(s) 237, 467, 540
BstF5I GGATG 2 cut(s) 57, 82
BstFNI CGCG 2 cut(s) 27, 135
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 106, 150
BstMAI GTCTC 1 cut(s) 565
BstMBI GATC 2 cut(s) 103, 147
BstMWI GCNNNNNNNGC 4 cut(s) 141, 335, 500, 509
BstNI CCWGG 3 cut(s) 110, 202, 282
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 3 cut(s) 108, 200, 280
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 2 cut(s) 27, 135
BstV1I GCAGC 1 cut(s) 490
BsuRI GGCC 3 cut(s) 44, 494, 604
BtsCI GGATG 2 cut(s) 57, 82
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 494
Cfr13I GGNCC 5 cut(s) 42, 124, 214, 492, 602
CsiI ACCWGGT 1 cut(s) 200
CviAII CATG 2 cut(s) 527, 606
DdeI CTNAG 3 cut(s) 237, 467, 540
DpnI GATC 2 cut(s) 105, 149
DpnII GATC 2 cut(s) 103, 147
DriI GACNNNNNGTC 1 cut(s) 557
Eam1105I GACNNNNNGTC 1 cut(s) 557
Eco130I CCWWGG 1 cut(s) 345
Eco47I GGWCC 2 cut(s) 124, 214
Eco57I CTGAAG 2 cut(s) 194, 195
Eco88I CYCGRG 1 cut(s) 562
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 3 cut(s) 108, 200, 280
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 2 cut(s) 530, 609
FaiI YATR 7 cut(s) 289, 302, 390, 442, 456, 528, 607
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 526, 605
FauI CCCGC 2 cut(s) 32, 140
FbaI TGATCA 2 cut(s) 103, 147
Fnu4HI GCNGC 1 cut(s) 504
FokI GGATG 2 cut(s) 44, 89
Fsp4HI GCNGC 1 cut(s) 504
GlaI GCGC 1 cut(s) 28
GluI GCNGC 1 cut(s) 504
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 3 cut(s) 44, 494, 604
HapII CCGG 1 cut(s) 495
HhaI GCGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 530, 609
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HinfI GANTC 2 cut(s) 552, 586
HpaII CCGG 1 cut(s) 495
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 23, 124
Hpy188I TCNGA 1 cut(s) 468
Hpy188III TCNNGA 5 cut(s) 74, 101, 212, 264, 562
Hpy8I GTNNAC 2 cut(s) 23, 124
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 379, 487
HpyCH4V TGCA 3 cut(s) 323, 440, 512
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 335, 500, 509
HpyF3I CTNAG 3 cut(s) 237, 467, 540
Hsp92II CATG 2 cut(s) 530, 609
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 2 cut(s) 103, 147
Kzo9I GATC 2 cut(s) 103, 147
LmnI GCTCC 1 cut(s) 511
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 1 cut(s) 63
MabI ACCWGGT 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 290, 313
MalI GATC 2 cut(s) 105, 149
MboI GATC 2 cut(s) 103, 147
MboII GAAGA 1 cut(s) 200
MluCI AATT 2 cut(s) 339, 432
MlyI GAGTC 1 cut(s) 546
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 7 cut(s) 106, 226, 232, 268, 375, 474, 535
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 2 cut(s) 408, 417
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 3 cut(s) 110, 202, 282
MvaI CCWGG 3 cut(s) 110, 202, 282
MvnI CGCG 2 cut(s) 27, 135
MwoI GCNNNNNNNGC 4 cut(s) 141, 335, 500, 509
NdeII GATC 2 cut(s) 103, 147
NlaIII CATG 2 cut(s) 530, 609
NlaIV GGNNCC 5 cut(s) 43, 99, 126, 279, 493
NspI RCATGY 1 cut(s) 530
PaeR7I CTCGAG 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 586
PkrI GCNGC 1 cut(s) 505
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 108, 200, 280
PspGI CCWGG 3 cut(s) 108, 200, 280
PspN4I GGNNCC 5 cut(s) 43, 99, 126, 279, 493
PspPI GGNCC 5 cut(s) 42, 124, 214, 492, 602
PspPPI RGGWCCY 1 cut(s) 214
PsrI GAACNNNNNNTAC 2 cut(s) 261, 293
PstI CTGCAG 1 cut(s) 325
SaqAI TTAA 2 cut(s) 408, 417
SatI GCNGC 1 cut(s) 504
Sau3AI GATC 2 cut(s) 103, 147
Sau96I GGNCC 5 cut(s) 42, 124, 214, 492, 602
SchI GAGTC 1 cut(s) 546
ScrFI CCNGG 3 cut(s) 110, 202, 282
SexAI ACCWGGT 1 cut(s) 200
SfaNI GCATC 1 cut(s) 63
SfcI CTRYAG 1 cut(s) 321
Sfr274I CTCGAG 1 cut(s) 562
SinI GGWCC 2 cut(s) 124, 214
SlaI CTCGAG 1 cut(s) 562
SmlI CTYRAG 2 cut(s) 407, 562
SmoI CTYRAG 2 cut(s) 407, 562
Sse9I AATT 2 cut(s) 339, 432
SsiI CCGC 2 cut(s) 39, 133
StyD4I CCNGG 3 cut(s) 108, 200, 280
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 379, 487
TaqI TCGA 1 cut(s) 563
TasI AATT 2 cut(s) 339, 432
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 2 cut(s) 408, 417
Tru9I TTAA 2 cut(s) 408, 417
TseI GCWGC 1 cut(s) 503
TspDTI ATGAA 1 cut(s) 443
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 124, 214
XceI RCATGY 1 cut(s) 530
XhoI CTCGAG 1 cut(s) 562
XmnI GAANNNNTTC 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.