FvH4_4g31510

Ran guanine nucleotide release

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014591
Physical Location & Seq
Forward (+)
30606095 .. 30608707
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31510.t1

Sequence Viewer

Length: 609 bp
ATGGCTGAGGAGAAGTACTCTCAGCGCCCTTTGTTCGGCGGCGCCATCTCTAGCCTCTTCCCTGATAGATTTCAGGATGTGAGCAATGTTCGTCAGGTTCCTGATCACCAGGAGGCGTTTGTGGACCCGGCCCGCGACGAGAGCTTGATCTTTGAGCTGTTGGATTTGAAGCCTGAAGTTGGGGACAATGGAAGTGCTACCTGGTTTCTTCAGGACCTTGCTACTGAACAGGACGCTGAGGGAAGTGTGTTGATTGAGCAGTCGGGAGTAGTTGAGGTTCCTGGACTAAGTTACGGAAACATACCTGCTGTTGTTACAACTGCAGTTGGCCAAATGGCCATTTCCAAGGGGCGACAAGGAAGGGAAGCACAAAATACTGTGAGGGTCTATGTGGCAAATCTACGACTTAAGGGAGTTTCTACAGATGTGCTGATTACTGCATATGAACCCATTCATATCAATCCTCTGAGCGAAAGTGCTAGCACAGTCGGCGCGGGTATCGCTGCTCCTGCATTACAATCTGGGCATGTGCCAATGGTTGAGGTGTTCAGAGTAGCCGTTTCAAGCTTCAAAGTGAATGACTGGAATCTCTTTGGTTCTGGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mog1

Protein Analysis

203

Amino Acids

21.69

Weight (kDa)

4.61

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mog1 PF04603 9 - 150 3.9e-40 Ran-interacting Mog1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69680
fragaria_vesca FvH4_2g13310 FvH4_4g31510
malus_domestica MD13G1073400.v1.1 MD16G1074700.v1.1
prunus_persica Prupe.1G272700_v2.0.a1
pyrus_communis pycom13g06570
rosa_chinensis RchiOBHm_Chr4g0440001
rosa_laevigata RLG00000006216
rosa_multiflora Rmu_sc0006000.1_g000008
rosa_roxburghii Rroxscaffold_5G00380950
rosa_rugosa Rorug04G0323100 Rorug04G0323200
rosa_samantha Rh4BG386500 Rh4CG401000 Rh4DG380800
rosa_wichuraiana Rw4G032010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccB1I GGYRCC 1 cut(s) 41
AccII CGCG 2 cut(s) 135, 494
AciI CCGC 3 cut(s) 39, 133, 494
AcoI YGGCCR 2 cut(s) 328, 336
AcuI CTGAAG 2 cut(s) 194, 195
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 1 cut(s) 17
AfiI CCNNNNNNNGG 2 cut(s) 35, 179
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 3 cut(s) 169, 564, 571
AjnI CCWGG 3 cut(s) 108, 200, 280
AluBI AGCT 3 cut(s) 144, 157, 567
AluI AGCT 3 cut(s) 144, 157, 567
AoxI GGCC 4 cut(s) 129, 328, 336, 602
ApeKI GCWGC 1 cut(s) 503
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 3 cut(s) 27, 44, 494
AspS9I GGNCC 4 cut(s) 124, 130, 214, 602
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 98
AsuNHI GCTAGC 1 cut(s) 479
AvaII GGWCC 2 cut(s) 124, 214
BalI TGGCCA 2 cut(s) 330, 338
BanI GGYRCC 1 cut(s) 41
BbvCI CCTCAGC 2 cut(s) 6, 237
BbvI GCAGC 1 cut(s) 490
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 542
BciT130I CCWGG 3 cut(s) 110, 202, 282
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 2 cut(s) 51, 480
BfmI CTRYAG 2 cut(s) 321, 420
BfoI RGCGCY 2 cut(s) 28, 45
BfrI CTTAAG 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 2 cut(s) 40, 504
BlsI GCNGC 2 cut(s) 41, 505
BmcAI AGTACT 1 cut(s) 17
Bme1390I CCNGG 4 cut(s) 110, 128, 202, 282
Bme18I GGWCC 2 cut(s) 124, 214
BmgT120I GGNCC 4 cut(s) 124, 130, 214, 602
BmiI GGNNCC 4 cut(s) 43, 99, 126, 279
BmrFI CCNGG 4 cut(s) 110, 128, 202, 282
BmtI GCTAGC 1 cut(s) 483
BplI GAGNNNNNCTC 1 cut(s) 34
Bpu10I CCTNAGC 2 cut(s) 6, 237
BpuMI CCSGG 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 179
Bse1I ACTGG 1 cut(s) 587
Bse3DI GCAATG 1 cut(s) 91
BseBI CCWGG 3 cut(s) 110, 202, 282
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 35, 179
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 3 cut(s) 35, 228, 458
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 490
Bsh1236I CGCG 2 cut(s) 135, 494
BshFI GGCC 4 cut(s) 131, 330, 338, 604
BshNI GGYRCC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 2 cut(s) 35, 179
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 4 cut(s) 131, 330, 338, 604
Bsp143I GATC 2 cut(s) 103, 147
BspACI CCGC 3 cut(s) 39, 133, 494
BspANI GGCC 4 cut(s) 131, 330, 338, 604
BspCNI CTCAG 3 cut(s) 34, 229, 459
BspFNI CGCG 2 cut(s) 135, 494
BspLI GGNNCC 4 cut(s) 43, 99, 126, 279
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 313
BspOI GCTAGC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 91
BsrI ACTGG 1 cut(s) 587
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 103, 147
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 3 cut(s) 110, 202, 282
Bst4CI ACNGT 2 cut(s) 379, 487
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 133, 481
BstDEI CTNAG 5 cut(s) 6, 21, 237, 287, 467
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 2 cut(s) 135, 494
BstH2I RGCGCY 2 cut(s) 28, 45
BstHHI GCGC 3 cut(s) 27, 44, 494
BstKTI GATC 2 cut(s) 106, 150
BstMBI GATC 2 cut(s) 103, 147
BstMWI GCNNNNNNNGC 4 cut(s) 141, 489, 500, 509
BstNI CCWGG 3 cut(s) 110, 202, 282
BstNSI RCATGY 1 cut(s) 530
BstSCI CCNGG 4 cut(s) 108, 126, 200, 280
BstSFI CTRYAG 2 cut(s) 321, 420
BstUI CGCG 2 cut(s) 135, 494
BstV1I GCAGC 1 cut(s) 490
BsuRI GGCC 4 cut(s) 131, 330, 338, 604
BtsCI GGATG 1 cut(s) 82
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 133, 481
CfoI GCGC 3 cut(s) 27, 44, 494
Cfr13I GGNCC 4 cut(s) 124, 130, 214, 602
CseI GACGC 1 cut(s) 242
CsiI ACCWGGT 1 cut(s) 200
Csp6I GTAC 1 cut(s) 16
CviAII CATG 2 cut(s) 527, 606
CviQI GTAC 1 cut(s) 16
DdeI CTNAG 5 cut(s) 6, 21, 237, 287, 467
DinI GGCGCC 1 cut(s) 43
DpnI GATC 2 cut(s) 105, 149
DpnII GATC 2 cut(s) 103, 147
EaeI YGGCCR 2 cut(s) 328, 336
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 345
Eco47I GGWCC 2 cut(s) 124, 214
Eco57I CTGAAG 2 cut(s) 194, 195
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 3 cut(s) 108, 200, 280
EcoT14I CCWWGG 1 cut(s) 345
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 2 cut(s) 530, 609
FaiI YATR 7 cut(s) 302, 390, 442, 444, 456, 528, 607
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 526, 605
FauI CCCGC 2 cut(s) 140, 487
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 40, 504
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 40, 504
FspBI CTAG 2 cut(s) 51, 480
GlaI GCGC 3 cut(s) 26, 43, 493
GluI GCNGC 2 cut(s) 40, 504
HaeII RGCGCY 2 cut(s) 28, 45
HaeIII GGCC 4 cut(s) 131, 330, 338, 604
HapII CCGG 1 cut(s) 128
HgaI GACGC 1 cut(s) 242
HhaI GCGC 3 cut(s) 27, 44, 494
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 2 cut(s) 530, 609
Hin6I GCGC 3 cut(s) 25, 42, 492
HinP1I GCGC 3 cut(s) 25, 42, 492
HindIII AAGCTT 1 cut(s) 565
HinfI GANTC 1 cut(s) 586
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 468, 551
Hpy188III TCNNGA 4 cut(s) 74, 101, 212, 264
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 379, 487
HpyCH4V TGCA 3 cut(s) 323, 440, 512
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 489, 500, 509
HpyF3I CTNAG 5 cut(s) 6, 21, 237, 287, 467
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 2 cut(s) 530, 609
HspAI GCGC 3 cut(s) 25, 42, 492
KasI GGCGCC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 103, 147
LmnI GCTCC 1 cut(s) 511
Lsp1109I GCAGC 1 cut(s) 490
MabI ACCWGGT 1 cut(s) 200
MaeI CTAG 2 cut(s) 51, 480
MaeIII GTNAC 2 cut(s) 290, 313
MalI GATC 2 cut(s) 105, 149
MboI GATC 2 cut(s) 103, 147
MboII GAAGA 2 cut(s) 49, 200
MlsI TGGCCA 2 cut(s) 330, 338
MluNI TGGCCA 2 cut(s) 330, 338
Mly113I GGCGCC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 7 cut(s) 65, 106, 232, 268, 375, 474, 535
Mox20I TGGCCA 2 cut(s) 330, 338
MroXI GAANNNNTTC 1 cut(s) 450
MscI TGGCCA 2 cut(s) 330, 338
MseI TTAA 1 cut(s) 408
Msp20I TGGCCA 2 cut(s) 330, 338
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 4 cut(s) 110, 128, 202, 282
MvaI CCWGG 3 cut(s) 110, 202, 282
MvnI CGCG 2 cut(s) 135, 494
MwoI GCNNNNNNNGC 4 cut(s) 141, 489, 500, 509
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 442
NdeII GATC 2 cut(s) 103, 147
NheI GCTAGC 1 cut(s) 479
NlaIII CATG 2 cut(s) 530, 609
NlaIV GGNNCC 4 cut(s) 43, 99, 126, 279
NspI RCATGY 1 cut(s) 530
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 586
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 2 cut(s) 41, 505
PluTI GGCGCC 1 cut(s) 45
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 108, 200, 280
PspGI CCWGG 3 cut(s) 108, 200, 280
PspN4I GGNNCC 4 cut(s) 43, 99, 126, 279
PspPI GGNCC 4 cut(s) 124, 130, 214, 602
PspPPI RGGWCCY 1 cut(s) 214
PsrI GAACNNNNNNTAC 2 cut(s) 261, 293
PstI CTGCAG 1 cut(s) 325
RsaI GTAC 1 cut(s) 17
RsaNI GTAC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 2 cut(s) 40, 504
Sau3AI GATC 2 cut(s) 103, 147
Sau96I GGNCC 4 cut(s) 124, 130, 214, 602
ScaI AGTACT 1 cut(s) 17
ScrFI CCNGG 4 cut(s) 110, 128, 202, 282
SetI ASST 9 cut(s) 99, 146, 159, 203, 219, 279, 307, 546, 569
SexAI ACCWGGT 1 cut(s) 200
SfcI CTRYAG 2 cut(s) 321, 420
SfoI GGCGCC 1 cut(s) 43
SinI GGWCC 2 cut(s) 124, 214
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
SsiI CCGC 3 cut(s) 39, 133, 494
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 2 cut(s) 51, 480
StyD4I CCNGG 4 cut(s) 108, 126, 200, 280
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 379, 487
TatI WGTACW 1 cut(s) 15
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TseI GCWGC 1 cut(s) 503
TspDTI ATGAA 2 cut(s) 443, 459
TspGWI ACGGA 1 cut(s) 309
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 124, 214
XceI RCATGY 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 2 cut(s) 51, 480
ZrmI AGTACT 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.