MD13G1073400.v1.1

Ran guanine nucleotide release

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014591
Physical Location & Seq
Forward (+)
5162081 .. 5164257
2177 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1073400.v1.1.491

Sequence Viewer

Length: 609 bp
ATGTCCCAGGATATCTACTCCGAGCGCCCCTTGTTCGGCGGCGCCATTACTAGCACCTTCCCTCTCAGATTCCAGGATGTGAGCAACATTCGGCAAGTTCCCGATCACCAGGAGGCGTTTGTGGACCCTGCCCGGGACGAAAGCTTGATCTTTGAGCTCTTGGAATTCAAGCATGAAGTCGGCGACAATGGAAGCGCCAACTGGTTTCTTCAGGACCTTGCCACTGAGCAAGATGCTGAGGGAAGCATGGTGATCGAGCAGTCTGGCATAATTGAGGCCCCCGGATTGTGTTATAGAGACACGCCTGCTGTTGTTACAACTGCTGTTGGTCAAATGGCAATTTCCAAGGGGCGGCAAGGAAGAGATGCACAAAATATTGTGAGGGTCTATGTGGCGAATCTGCGCCTTAAGGGAGTTAATACGGATGTGCTGATTACTGCATATGAGCCCGTTCATATAAATCCTTTGAGCGAAAGTGCAAACACCGTGGGGGCTGGTTTTGCGGTACCTGCAGTACAATCTGGGCATATGCCGGTAGCAGAGGTCTTTAAACTCGCCGTCTCTAGCTTCAGAGTCAATGACTGGAATCTTTTTGGTTCTGTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mog1

Protein Analysis

203

Amino Acids

22.0

Weight (kDa)

4.68

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mog1 PF04603 9 - 150 6.4e-41 Ran-interacting Mog1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69680
fragaria_vesca FvH4_2g13310 FvH4_4g31510
malus_domestica MD13G1073400.v1.1 MD16G1074700.v1.1
prunus_persica Prupe.1G272700_v2.0.a1
pyrus_communis pycom13g06570
rosa_chinensis RchiOBHm_Chr4g0440001
rosa_laevigata RLG00000006216
rosa_multiflora Rmu_sc0006000.1_g000008
rosa_roxburghii Rroxscaffold_5G00380950
rosa_rugosa Rorug04G0323100 Rorug04G0323200
rosa_samantha Rh4BG386500 Rh4CG401000 Rh4DG380800
rosa_wichuraiana Rw4G032010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 517
Acc65I GGTACC 1 cut(s) 505
AccB1I GGYRCC 2 cut(s) 41, 505
AciI CCGC 3 cut(s) 39, 352, 503
AcsI RAATTY 1 cut(s) 164
AcuI CTGAAG 2 cut(s) 194, 553
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 2 cut(s) 507, 516
AfiI CCNNNNNNNGG 3 cut(s) 35, 133, 351
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 3 cut(s) 6, 72, 108
AluBI AGCT 3 cut(s) 144, 157, 567
AluI AGCT 3 cut(s) 144, 157, 567
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 2 cut(s) 291, 565
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 164
Asp718I GGTACC 1 cut(s) 505
AspLEI GCGC 4 cut(s) 27, 44, 197, 405
AspS9I GGNCC 3 cut(s) 124, 214, 277
AsuC2I CCSGG 3 cut(s) 133, 134, 282
AsuHPI GGTGA 2 cut(s) 98, 262
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 2 cut(s) 124, 214
BanI GGYRCC 2 cut(s) 41, 505
BanII GRGCYC 2 cut(s) 159, 450
Bbv12I GWGCWC 1 cut(s) 159
BbvCI CCTCAGC 1 cut(s) 237
BceAI ACGGC 1 cut(s) 542
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 3 cut(s) 8, 74, 110
BcnI CCSGG 3 cut(s) 133, 134, 282
BcoDI GTCTC 2 cut(s) 291, 565
BfaI CTAG 2 cut(s) 51, 564
BfmI CTRYAG 1 cut(s) 510
BfoI RGCGCY 3 cut(s) 28, 45, 198
BfrI CTTAAG 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 517
BisI GCNGC 2 cut(s) 40, 353
BlsI GCNGC 2 cut(s) 41, 354
Bme1390I CCNGG 6 cut(s) 8, 74, 110, 133, 134, 282
Bme18I GGWCC 2 cut(s) 124, 214
BmeT110I CYCGRG 1 cut(s) 132
BmgT120I GGNCC 3 cut(s) 124, 214, 277
BmiI GGNNCC 4 cut(s) 43, 126, 279, 507
BmrFI CCNGG 6 cut(s) 8, 74, 110, 133, 134, 282
BmsI GCATC 2 cut(s) 223, 355
Bpu10I CCTNAGC 1 cut(s) 237
BpuMI CCSGG 3 cut(s) 133, 134, 282
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 5 cut(s) 6, 132, 280, 345, 486
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 133, 351
Bse118I RCCGGY 1 cut(s) 532
Bse1I ACTGG 2 cut(s) 206, 587
BseBI CCWGG 3 cut(s) 8, 74, 110
BseDI CCNNGG 5 cut(s) 6, 132, 280, 345, 486
BseGI GGATG 2 cut(s) 82, 430
BseLI CCNNNNNNNGG 3 cut(s) 35, 133, 351
BseMII CTCAG 3 cut(s) 79, 216, 228
BseNI ACTGG 2 cut(s) 206, 587
BshFI GGCC 1 cut(s) 278
BshNI GGYRCC 2 cut(s) 41, 505
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 3 cut(s) 133, 282, 533
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 3 cut(s) 35, 133, 351
BsmAI GTCTC 2 cut(s) 291, 565
BsmBI CGTCTC 1 cut(s) 565
BsmFI GGGAC 1 cut(s) 149
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 159, 450
Bsp143I GATC 3 cut(s) 103, 147, 252
BspACI CCGC 3 cut(s) 39, 352, 503
BspANI GGCC 1 cut(s) 278
BspCNI CTCAG 3 cut(s) 78, 217, 229
BspLI GGNNCC 4 cut(s) 43, 126, 279, 507
BspMAI CTGCAG 1 cut(s) 514
BspMI ACCTGC 1 cut(s) 517
BspT107I GGYRCC 2 cut(s) 41, 505
BspTI CTTAAG 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 532
BsrI ACTGG 2 cut(s) 206, 587
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 5 cut(s) 6, 132, 280, 345, 486
BssMI GATC 3 cut(s) 103, 147, 252
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 3 cut(s) 8, 74, 110
Bst4CI ACNGT 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 355
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 65, 225, 237
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 2 cut(s) 82, 430
BstH2I RGCGCY 3 cut(s) 28, 45, 198
BstHHI GCGC 4 cut(s) 27, 44, 197, 405
BstKTI GATC 3 cut(s) 106, 150, 255
BstMAI GTCTC 2 cut(s) 291, 565
BstMBI GATC 3 cut(s) 103, 147, 252
BstMWI GCNNNNNNNGC 2 cut(s) 500, 509
BstNI CCWGG 3 cut(s) 8, 74, 110
BstSCI CCNGG 6 cut(s) 6, 72, 108, 131, 132, 280
BstSFI CTRYAG 1 cut(s) 510
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 2 cut(s) 82, 430
BtsIMutI CAGTG 1 cut(s) 222
BveI ACCTGC 1 cut(s) 517
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 4 cut(s) 27, 44, 197, 405
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 3 cut(s) 124, 214, 277
Cfr9I CCCGGG 1 cut(s) 132
Csp6I GTAC 2 cut(s) 506, 515
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 2 cut(s) 173, 247
CviJI RGCY 6 cut(s) 144, 157, 278, 448, 494, 567
CviKI_1 RGCY 6 cut(s) 144, 157, 278, 448, 494, 567
CviQI GTAC 2 cut(s) 506, 515
DdeI CTNAG 3 cut(s) 65, 225, 237
DinI GGCGCC 1 cut(s) 43
DpnI GATC 3 cut(s) 105, 149, 254
DpnII GATC 3 cut(s) 103, 147, 252
DraI TTTAAA 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 355
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 345
Eco24I GRGCYC 2 cut(s) 159, 450
Eco32I GATATC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 124, 214
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 194, 553
Eco88I CYCGRG 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 157
EcoO109I RGGNCCY 2 cut(s) 214, 277
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 3 cut(s) 6, 72, 108
EcoRV GATATC 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 345
EcoT38I GRGCYC 2 cut(s) 159, 450
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 565
FaeI CATG 2 cut(s) 176, 250
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 172, 246
FauNDI CATATG 2 cut(s) 442, 528
Fnu4HI GCNGC 2 cut(s) 40, 353
FokI GGATG 2 cut(s) 89, 437
FriOI GRGCYC 2 cut(s) 159, 450
Fsp4HI GCNGC 2 cut(s) 40, 353
FspBI CTAG 2 cut(s) 51, 564
GlaI GCGC 4 cut(s) 26, 43, 196, 404
GluI GCNGC 2 cut(s) 40, 353
HaeII RGCGCY 3 cut(s) 28, 45, 198
HaeIII GGCC 1 cut(s) 278
HapII CCGG 3 cut(s) 133, 282, 533
HhaI GCGC 4 cut(s) 27, 44, 197, 405
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 2 cut(s) 176, 250
Hin6I GCGC 4 cut(s) 25, 42, 195, 403
HinP1I GCGC 4 cut(s) 25, 42, 195, 403
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 4 cut(s) 69, 397, 573, 586
HpaII CCGG 3 cut(s) 133, 282, 533
HphI GGTGA 2 cut(s) 98, 262
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 22, 68, 572
Hpy188III TCNNGA 2 cut(s) 101, 212
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 4 cut(s) 368, 440, 479, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 509
HpyF3I CTNAG 3 cut(s) 65, 225, 237
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 2 cut(s) 176, 250
HspAI GCGC 4 cut(s) 25, 42, 195, 403
KasI GGCGCC 1 cut(s) 41
KpnI GGTACC 1 cut(s) 509
Kzo9I GATC 3 cut(s) 103, 147, 252
LweI GCATC 2 cut(s) 223, 355
MaeI CTAG 2 cut(s) 51, 564
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 105, 149, 254
MboI GATC 3 cut(s) 103, 147, 252
MboII GAAGA 2 cut(s) 200, 372
MhlI GDGCHC 2 cut(s) 159, 450
MluCI AATT 3 cut(s) 164, 270, 339
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 1 cut(s) 582
MnlI CCTC 6 cut(s) 72, 106, 232, 268, 375, 535
MseI TTAA 3 cut(s) 408, 417, 549
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 3 cut(s) 133, 282, 533
MspR9I CCNGG 6 cut(s) 8, 74, 110, 133, 134, 282
MvaI CCWGG 3 cut(s) 8, 74, 110
MwoI GCNNNNNNNGC 2 cut(s) 500, 509
NarI GGCGCC 1 cut(s) 42
NciI CCSGG 3 cut(s) 133, 134, 282
NdeI CATATG 2 cut(s) 442, 528
NdeII GATC 3 cut(s) 103, 147, 252
NlaIII CATG 2 cut(s) 176, 250
NlaIV GGNNCC 4 cut(s) 43, 126, 279, 507
PfeI GAWTC 3 cut(s) 69, 397, 586
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 2 cut(s) 41, 354
PleI GAGTC 1 cut(s) 581
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 1 cut(s) 581
PpuMI RGGWCCY 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 6, 72, 108
PspGI CCWGG 3 cut(s) 6, 72, 108
PspN4I GGNNCC 4 cut(s) 43, 126, 279, 507
PspPI GGNCC 3 cut(s) 124, 214, 277
PspPPI RGGWCCY 1 cut(s) 214
PstI CTGCAG 1 cut(s) 514
RsaI GTAC 2 cut(s) 507, 516
RsaNI GTAC 2 cut(s) 506, 515
SacI GAGCTC 1 cut(s) 159
SaqAI TTAA 3 cut(s) 408, 417, 549
SatI GCNGC 2 cut(s) 40, 353
Sau3AI GATC 3 cut(s) 103, 147, 252
Sau96I GGNCC 3 cut(s) 124, 214, 277
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 6 cut(s) 8, 74, 110, 133, 134, 282
SduI GDGCHC 2 cut(s) 159, 450
SetI ASST 7 cut(s) 59, 146, 159, 219, 511, 546, 569
SfaNI GCATC 2 cut(s) 223, 355
SfcI CTRYAG 1 cut(s) 510
SfoI GGCGCC 1 cut(s) 43
SinI GGWCC 2 cut(s) 124, 214
SmaI CCCGGG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 3 cut(s) 164, 270, 339
SsiI CCGC 3 cut(s) 39, 352, 503
SspDI GGCGCC 1 cut(s) 41
SspI AATATT 1 cut(s) 376
SspMI CTAG 2 cut(s) 51, 564
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 6 cut(s) 6, 72, 108, 131, 132, 280
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 487
TaqI TCGA 1 cut(s) 255
TasI AATT 3 cut(s) 164, 270, 339
TatI WGTACW 1 cut(s) 514
TauI GCSGC 2 cut(s) 42, 355
TfiI GAWTC 3 cut(s) 69, 397, 586
Tru1I TTAA 3 cut(s) 408, 417, 549
Tru9I TTAA 3 cut(s) 408, 417, 549
TscAI CASTG 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 189, 443
TspGWI ACGGA 1 cut(s) 437
TspMI CCCGGG 1 cut(s) 132
TspRI CASTG 1 cut(s) 229
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 124, 214
XapI RAATTY 1 cut(s) 164
XmaI CCCGGG 1 cut(s) 132
XspI CTAG 2 cut(s) 51, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.