RLG00000006216

Ran guanine nucleotide release

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014591
Physical Location & Seq
Reverse (-)
5310566 .. 5313109
2544 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006216

Sequence Viewer

Length: 465 bp
ATGGCACAGGAAGTGTATTCTCAACGCGCTTTGTTCGGCGGGGCCATCTCCAGCATCATCCCTAATAGATTTCAGGATGTGAGCAATGTTCGTCAGGTTCCTGATCACCAGGAGGCATTTGTGGACCCCGCCCGCGACGAGAGCTTGATCATTGAGCTGTTGGATTTGAAGCCTGAAGTTGGGGACAATGGAAGTGCTACCTGGTTTCTTCAGGACCTTGCCACTGAGCAAGAGGCTGAGGGAAGTGTGGTGGTTGAGCAGTCGGGAGTAGTTGAGGTTCCTGGGCTATGTTACAGAAACATACCTGCTGTTGTTACAACTGCAGTTGGCCAAATGGCAATTTCCAAGGGGCGACAAGGAAGGGAAGCACAAAATACTGTAAGGGTCTATGTGGCAAACCTACGACTTAAGGGAGTTAATACAGATGTGCTAATTACTGCATATGAACCCATTCAGATCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mog1

Protein Analysis

155

Amino Acids

16.83

Weight (kDa)

4.68

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mog1 PF04603 10 - 150 2.2e-40 Ran-interacting Mog1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014591)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69680
fragaria_vesca FvH4_2g13310 FvH4_4g31510
malus_domestica MD13G1073400.v1.1 MD16G1074700.v1.1
prunus_persica Prupe.1G272700_v2.0.a1
pyrus_communis pycom13g06570
rosa_chinensis RchiOBHm_Chr4g0440001
rosa_laevigata RLG00000006216
rosa_multiflora Rmu_sc0006000.1_g000008
rosa_roxburghii Rroxscaffold_5G00380950
rosa_rugosa Rorug04G0323100 Rorug04G0323200
rosa_samantha Rh4BG386500 Rh4CG401000 Rh4DG380800
rosa_wichuraiana Rw4G032010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccII CGCG 2 cut(s) 27, 135
AciI CCGC 3 cut(s) 39, 129, 133
AcoI YGGCCR 1 cut(s) 328
AcuI CTGAAG 2 cut(s) 194, 195
AfiI CCNNNNNNNGG 1 cut(s) 179
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 1 cut(s) 169
AjnI CCWGG 3 cut(s) 108, 200, 280
AluBI AGCT 2 cut(s) 144, 157
AluI AGCT 2 cut(s) 144, 157
AoxI GGCC 2 cut(s) 42, 328
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 42, 124, 214
AsuHPI GGTGA 1 cut(s) 98
AvaII GGWCC 2 cut(s) 124, 214
BalI TGGCCA 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 237
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 3 cut(s) 110, 202, 282
BclI TGATCA 2 cut(s) 103, 147
BfmI CTRYAG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 407
BfuAI ACCTGC 1 cut(s) 313
Bme1390I CCNGG 3 cut(s) 110, 202, 282
Bme18I GGWCC 2 cut(s) 124, 214
BmgT120I GGNCC 3 cut(s) 42, 124, 214
BmiI GGNNCC 4 cut(s) 43, 99, 126, 279
BmrFI CCNGG 3 cut(s) 110, 202, 282
BmsI GCATC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 281, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse3DI GCAATG 1 cut(s) 91
BseBI CCWGG 3 cut(s) 110, 202, 282
BseDI CCNNGG 2 cut(s) 281, 345
BseGI GGATG 2 cut(s) 57, 82
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMI GCAATG 1 cut(s) 91
BseMII CTCAG 2 cut(s) 216, 228
Bsh1236I CGCG 2 cut(s) 27, 135
BshFI GGCC 2 cut(s) 44, 330
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 2 cut(s) 44, 330
Bsp143I GATC 3 cut(s) 103, 147, 456
BspACI CCGC 3 cut(s) 39, 129, 133
BspANI GGCC 2 cut(s) 44, 330
BspCNI CTCAG 2 cut(s) 217, 229
BspFNI CGCG 2 cut(s) 27, 135
BspLI GGNNCC 4 cut(s) 43, 99, 126, 279
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 313
BspTI CTTAAG 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 281, 345
BssMI GATC 3 cut(s) 103, 147, 456
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 3 cut(s) 110, 202, 282
Bst4CI ACNGT 1 cut(s) 379
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 225, 237
BstF5I GGATG 2 cut(s) 57, 82
BstFNI CGCG 2 cut(s) 27, 135
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 3 cut(s) 106, 150, 459
BstMBI GATC 3 cut(s) 103, 147, 456
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 3 cut(s) 110, 202, 282
BstSCI CCNGG 3 cut(s) 108, 200, 280
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 2 cut(s) 27, 135
BsuRI GGCC 2 cut(s) 44, 330
BtsCI GGATG 2 cut(s) 57, 82
BtsIMutI CAGTG 1 cut(s) 222
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 42, 124, 214
CsiI ACCWGGT 1 cut(s) 200
CviJI RGCY 7 cut(s) 44, 144, 157, 172, 236, 286, 330
CviKI_1 RGCY 7 cut(s) 44, 144, 157, 172, 236, 286, 330
DdeI CTNAG 2 cut(s) 225, 237
DpnI GATC 3 cut(s) 105, 149, 458
DpnII GATC 3 cut(s) 103, 147, 456
EaeI YGGCCR 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 345
Eco47I GGWCC 2 cut(s) 124, 214
Eco57I CTGAAG 2 cut(s) 194, 195
EcoO109I RGGNCCY 1 cut(s) 214
EcoRII CCWGG 3 cut(s) 108, 200, 280
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaiI YATR 5 cut(s) 289, 302, 390, 442, 444
FaqI GGGAC 1 cut(s) 197
FauI CCCGC 3 cut(s) 32, 136, 140
FauNDI CATATG 1 cut(s) 442
FbaI TGATCA 2 cut(s) 103, 147
FokI GGATG 2 cut(s) 44, 89
GlaI GCGC 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 34
HaeIII GGCC 2 cut(s) 44, 330
HhaI GCGC 1 cut(s) 29
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 456
Hpy188III TCNNGA 4 cut(s) 74, 101, 212, 264
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4V TGCA 2 cut(s) 323, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 2 cut(s) 225, 237
HspAI GCGC 1 cut(s) 27
Ksp22I TGATCA 2 cut(s) 103, 147
Kzo9I GATC 3 cut(s) 103, 147, 456
LweI GCATC 1 cut(s) 63
MabI ACCWGGT 1 cut(s) 200
MaeIII GTNAC 2 cut(s) 290, 313
MalI GATC 3 cut(s) 105, 149, 458
MboI GATC 3 cut(s) 103, 147, 456
MboII GAAGA 1 cut(s) 200
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 2 cut(s) 339, 432
MluNI TGGCCA 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 4 cut(s) 106, 226, 232, 268
Mox20I TGGCCA 1 cut(s) 330
MroXI GAANNNNTTC 1 cut(s) 450
MscI TGGCCA 1 cut(s) 330
MseI TTAA 2 cut(s) 408, 417
Msp20I TGGCCA 1 cut(s) 330
MspCI CTTAAG 1 cut(s) 407
MspR9I CCNGG 3 cut(s) 110, 202, 282
MvaI CCWGG 3 cut(s) 110, 202, 282
MvnI CGCG 2 cut(s) 27, 135
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeI CATATG 1 cut(s) 442
NdeII GATC 3 cut(s) 103, 147, 456
NlaIV GGNNCC 4 cut(s) 43, 99, 126, 279
PdmI GAANNNNTTC 1 cut(s) 450
PpuMI RGGWCCY 1 cut(s) 214
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 3 cut(s) 108, 200, 280
PspGI CCWGG 3 cut(s) 108, 200, 280
PspN4I GGNNCC 4 cut(s) 43, 99, 126, 279
PspPI GGNCC 3 cut(s) 42, 124, 214
PspPPI RGGWCCY 1 cut(s) 214
PsrI GAACNNNNNNTAC 2 cut(s) 261, 293
PstI CTGCAG 1 cut(s) 325
SaqAI TTAA 2 cut(s) 408, 417
Sau3AI GATC 3 cut(s) 103, 147, 456
Sau96I GGNCC 3 cut(s) 42, 124, 214
ScrFI CCNGG 3 cut(s) 110, 202, 282
SetI ASST 8 cut(s) 99, 146, 159, 203, 219, 279, 307, 402
SexAI ACCWGGT 1 cut(s) 200
SfaNI GCATC 1 cut(s) 63
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 2 cut(s) 124, 214
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 2 cut(s) 339, 432
SsiI CCGC 3 cut(s) 39, 129, 133
StyD4I CCNGG 3 cut(s) 108, 200, 280
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 379
TasI AATT 2 cut(s) 339, 432
Tru1I TTAA 2 cut(s) 408, 417
Tru9I TTAA 2 cut(s) 408, 417
TscAI CASTG 1 cut(s) 229
TspDTI ATGAA 1 cut(s) 459
TspRI CASTG 1 cut(s) 229
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 124, 214
XmnI GAANNNNTTC 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.