Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0002818

Physical Location & Seq

Genomic Coordinates Forward (+)

12630620 .. 12632415

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCAACATCACCCTTGCACATATGAAACTATAAGCGGTCTTCAATTTGCAAGCAGAGCATTGCGTGTCAGAAACTGTGCTCATGTCAATGAGATTTTGACTGATGCGGCTCTTCTAAAGCGTCAAAAGAAGGAAATTGAGGAGCTTCGAGCAAAATTGCAGGATTCCCATTTAGAACATTGGACAGAGGAAATCCTCAATTTGCGGAATACATTGTTGCAGACCGAGTTAGAAAGGGAACGTATAGCCTTGGAGTTAGAGGAGGAAAAGAAAGCCCAAGCTGAAAGAGAGAAAATGGTCCAACAAGCTAAGAAAATTGAAAATTTGAGCTCAATGGTTTTGTATTCAAATAGGGATGAAAATCGTGATCACTTCAAGAAGTTGGTTCTCAAAACAATAAAAGTTGAAATCCTAGGCAATAGAAACTCAAGTCATCTTACTATGAAAATTAATGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000779 GO:0000793 GO:0000819 GO:0001932 GO:0001934 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007088 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009893 GO:0009987 GO:0010562 GO:0010564 GO:0010604 GO:0010965 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019220 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0030071 GO:0030496 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0033674 GO:0034508 GO:0034622 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043515 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051233 GO:0051234 GO:0051246 GO:0051247 GO:0051276 GO:0051303 GO:0051305 GO:0051310 GO:0051315 GO:0051338 GO:0051347 GO:0051382 GO:0051383 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0072686 GO:0080090 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099606 GO:0099607 GO:0140014 GO:1901987 GO:1901990 GO:1902099 GO:1902850 GO:1903047 GO:1905818 GO:1990023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

154

Amino Acids

18.05

Weight (kDa)

7.83

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10180 AT3G10180
fragaria_vesca	FvH4_2g14360 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901
malus_domestica	MD12G1093000.v1.1 MD12G1093100.v1.1 MD14G1085100.v1.1 MD16G1213600.v1.1
prunus_persica	Prupe.7G041000_v2.0.a1 Prupe.7G041000_v2.0.a1 Prupe.7G041000_v2.0.a1
pyrus_communis	pycom12g07820 pycom14g07460
rosa_chinensis	RchiOBHm_Chr1g0323861
rosa_laevigata	RLG00000030251 RLG00000030294
rosa_multiflora	Rmu_co8206848.1_g000001 Rmu_sc0001449.1_g000013
rosa_roxburghii	Rroxscaffold_4G00326290
rosa_rugosa	Rorug01G0040400
rosa_samantha	Rh1AG057600 Rh1BG048700 Rh1CG059000 Rh1DG062900
rosa_wichuraiana	Rw0G023120 Rw0G023130 Rw1G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	36, 107, 205
AcsI	RAATTY	1 cut(s)	322
AgsI	TTSAA	5 cut(s)	44, 320, 348, 376, 407
AluBI	AGCT	4 cut(s)	145, 281, 308, 330
AluI	AGCT	4 cut(s)	145, 281, 308, 330
Alw21I	GWGCWC	2 cut(s)	82, 332
AlwNI	CAGNNNCTG	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	322
AseI	ATTAAT	1 cut(s)	450
AspA2I	CCTAGG	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	298
AvaII	GGWCC	1 cut(s)	298
AvrII	CCTAGG	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	2 cut(s)	82, 332
BclI	TGATCA	1 cut(s)	367
BfaI	CTAG	1 cut(s)	413
BisI	GCNGC	1 cut(s)	108
BlnI	CCTAGG	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	249, 412
Bse3DI	GCAATG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	249, 412
BseGI	GGATG	1 cut(s)	361
BseJI	GATNNNNATC	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	59
BseRI	GAGGAG	2 cut(s)	155, 275
BsiHKAI	GWGCWC	2 cut(s)	82, 332
Bsp1286I	GDGCHC	2 cut(s)	82, 332
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	3 cut(s)	36, 107, 205
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	249, 412
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	2 cut(s)	249, 412
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	1 cut(s)	370
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	298
CseI	GACGC	1 cut(s)	110
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	7 cut(s)	110, 145, 248, 275, 281, 308, 330
CviKI_1	RGCY	7 cut(s)	110, 145, 248, 275, 281, 308, 330
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	249, 412
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	249, 412
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	2 cut(s)	249, 412
FaeI	CATG	1 cut(s)	86
FaiI	YATR	6 cut(s)	22, 24, 32, 84, 245, 443
FatI	CATG	1 cut(s)	82
FauNDI	CATATG	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	1 cut(s)	108
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	2 cut(s)	365, 376
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	5 cut(s)	4, 18, 50, 160, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	142
LpnPI	CCDG	1 cut(s)	146
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	241
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	2 cut(s)	32, 104
MhlI	GDGCHC	2 cut(s)	82, 332
MluCI	AATT	8 cut(s)	44, 135, 155, 199, 315, 322, 447, 457
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	5 cut(s)	133, 181, 206, 253, 256
MseI	TTAA	2 cut(s)	450, 460
MslI	CAYNNNNRTG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	109
PshBI	ATTAAT	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	332
PspPI	GGNCC	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	75
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	332
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	450, 460
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	1 cut(s)	298
SduI	GDGCHC	2 cut(s)	82, 332
SetI	ASST	5 cut(s)	147, 244, 283, 310, 332
SfaNI	GCATC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
Sse9I	AATT	8 cut(s)	44, 135, 155, 199, 315, 322, 447, 457
SsiI	CCGC	3 cut(s)	36, 107, 205
SspMI	CTAG	1 cut(s)	413
SstI	GAGCTC	1 cut(s)	332
StyI	CCWWGG	2 cut(s)	249, 412
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	148
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	8 cut(s)	44, 135, 155, 199, 315, 322, 447, 457
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	450, 460
Tru9I	TTAA	2 cut(s)	450, 460
TspDTI	ATGAA	3 cut(s)	39, 372, 458
VpaK11BI	GGWCC	1 cut(s)	298
VspI	ATTAAT	1 cut(s)	450
XapI	RAATTY	1 cut(s)	322
XmaJI	CCTAGG	1 cut(s)	412
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.