Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002818

Physical Location & Seq

Genomic Coordinates Reverse (-)

12116511 .. 12132222

Gene Structure 15712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1093000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTTTCTGGAGCAATGTGTAATGACTACTCCAAGTCTTATCTCAATAAAAGTACCATAAATGGGGACAATAACGTTAGTTTAAGAGAGCCAGAGACTATTCTTGTGATTAAGCGACTTCAAGAACAGATTAAGATGCTTGAAACAGAGAAGTCTTCAAGCCAGCCAAATGTGGATAATGTAGTTGAGCTGGCAACATTTGTGCTCGGGAGAAGTTTGACGAGACAGGCAACTATGGAGCTCTATGAAGAGCTTCAAGTTGCACATGAGGAGGCCAAGGTAGCTCGTGATCAACATACTTGGAACGAATCTGTAACAAAAGTTGATGATGGAAGTTGTGACTTTGTGATCAAGCTTGCAAAGGAGGTCCAAGAATTAATGTTGGAAGTTCGAAGCTCAAAAATAGCCATTGAATGTGCATCTTCAGTTTTGGATGAGGTCTCCAAGAGTTTCTCTGTGCTATTCGATACATTCCTATGCCTTTTATACCATCAATCAGTTGATCTTCCGAACCAGATAGAAGAACTGAAACTGCAGACTCAAAATTCCGAGAACTCTTTCAGGGAACTTTTGGAACACCAAGATTTGGAAAAGGGAGAATATATTTCTCATATACAAGTTCTTGAAAAAGAAATATCAGGTTTATCATCCTGTTCTTTGGCCAAGGAAAAGGAAAATCTGCACAGAGATGTTGAAAAAACAAGAATGAAGTTGAAAGAGACAGAGTTTAAGCTGAAGAATGCCATACAAGAGAAAACCAAACTAGAGGTGAGGAATGAGTTGGAGTCTTGTAGACAAGAATGCAAGTTCCTTATGGAAAGATTAACTTGTTGCGAGGAAACAGCTGGGCAGAAGACATTCAGTGTGGAGAAGTCTTTTGGGATTGATCAACTGAATAATGACGATAATACATATCATTTTCTGAGCAAACAGTCCCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000779 GO:0000793 GO:0000819 GO:0001932 GO:0001934 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007088 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009893 GO:0009987 GO:0010562 GO:0010564 GO:0010604 GO:0010965 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019220 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0030071 GO:0030496 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0033674 GO:0034508 GO:0034622 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043515 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051233 GO:0051234 GO:0051246 GO:0051247 GO:0051276 GO:0051303 GO:0051305 GO:0051310 GO:0051315 GO:0051338 GO:0051347 GO:0051382 GO:0051383 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0072686 GO:0080090 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099606 GO:0099607 GO:0140014 GO:1901987 GO:1901990 GO:1902099 GO:1902850 GO:1903047 GO:1905818 GO:1990023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

315

Amino Acids

36.13

Weight (kDa)

5.01

Isoelectric Point (pI)

46.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10180 AT3G10180
fragaria_vesca	FvH4_2g14360 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901
malus_domestica	MD12G1093000.v1.1 MD12G1093100.v1.1 MD14G1085100.v1.1 MD16G1213600.v1.1
prunus_persica	Prupe.7G041000_v2.0.a1 Prupe.7G041000_v2.0.a1 Prupe.7G041000_v2.0.a1
pyrus_communis	pycom12g07820 pycom14g07460
rosa_chinensis	RchiOBHm_Chr1g0323861
rosa_laevigata	RLG00000030251 RLG00000030294
rosa_multiflora	Rmu_co8206848.1_g000001 Rmu_sc0001449.1_g000013
rosa_roxburghii	Rroxscaffold_4G00326290
rosa_rugosa	Rorug01G0040400
rosa_samantha	Rh1AG057600 Rh1BG048700 Rh1CG059000 Rh1DG062900
rosa_wichuraiana	Rw0G023120 Rw0G023130 Rw1G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccI	GTMKAC	1 cut(s)	793
AclI	AACGTT	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	2 cut(s)	408, 755
AfaI	GTAC	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	63, 586
AgsI	TTSAA	8 cut(s)	122, 143, 159, 257, 413, 626, 695, 715
AluBI	AGCT	8 cut(s)	190, 241, 253, 284, 355, 396, 733, 845
AluI	AGCT	8 cut(s)	190, 241, 253, 284, 355, 396, 733, 845
Alw21I	GWGCWC	2 cut(s)	207, 243
Alw26I	GTCTC	4 cut(s)	89, 217, 445, 713
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	273, 660
ApoI	RAATTY	1 cut(s)	544
AseI	ATTAAT	1 cut(s)	377
Asp700I	GAANNNNTTC	3 cut(s)	252, 557, 857
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	781
AsuII	TTCGAA	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	147, 860
Bbv12I	GWGCWC	2 cut(s)	207, 243
BccI	CCATC	2 cut(s)	323, 498
BclI	TGATCA	3 cut(s)	289, 348, 886
BcoDI	GTCTC	4 cut(s)	89, 217, 445, 713
BfaI	CTAG	1 cut(s)	764
BfmI	CTRYAG	1 cut(s)	533
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	367
BmsI	GCATC	2 cut(s)	126, 428
BpiI	GAAGAC	2 cut(s)	147, 860
BpmI	CTGGAG	1 cut(s)	30
Bpu14I	TTCGAA	1 cut(s)	391
BsaI	GGTCTC	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	276, 663
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 586
Bse3DI	GCAATG	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	276, 663
BseGI	GGATG	2 cut(s)	439, 647
BseLI	CCNNNNNNNGG	2 cut(s)	63, 586
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	914
BseRI	GAGGAG	1 cut(s)	284
BseYI	CCCAGC	1 cut(s)	845
BsgI	GTGCAG	1 cut(s)	665
BshFI	GGCC	2 cut(s)	275, 662
BsiHKAI	GWGCWC	2 cut(s)	207, 243
BsiHKCI	CYCGRG	1 cut(s)	206
BslFI	GGGAC	2 cut(s)	80, 919
BslI	CCNNNNNNNGG	2 cut(s)	63, 586
BsmAI	GTCTC	4 cut(s)	89, 217, 445, 713
BsmFI	GGGAC	2 cut(s)	80, 919
BsmI	GAATGC	2 cut(s)	745, 806
BsnI	GGCC	2 cut(s)	275, 662
Bso31I	GGTCTC	1 cut(s)	445
BsoBI	CYCGRG	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	207, 243
Bsp143I	GATC	4 cut(s)	289, 348, 502, 886
BspANI	GGCC	2 cut(s)	275, 662
BspCNI	CTCAG	1 cut(s)	915
BspMAI	CTGCAG	1 cut(s)	537
BspQI	GCTCTTC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	445
BsrDI	GCAATG	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	276, 663
BssMI	GATC	4 cut(s)	289, 348, 502, 886
BssSI	CACGAG	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	276, 663
Bst2BI	CACGAG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	933
Bst6I	CTCTTC	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	391
BstC8I	GCNNGC	3 cut(s)	164, 192, 357
BstDEI	CTNAG	1 cut(s)	923
BstF5I	GGATG	2 cut(s)	439, 647
BstKTI	GATC	4 cut(s)	292, 351, 505, 889
BstMAI	GTCTC	4 cut(s)	89, 217, 445, 713
BstMBI	GATC	4 cut(s)	289, 348, 502, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	533
BstV2I	GAAGAC	2 cut(s)	147, 860
BsuRI	GGCC	2 cut(s)	275, 662
BtsCI	GGATG	2 cut(s)	439, 647
BtsIMutI	CAGTG	1 cut(s)	868
Cac8I	GCNNGC	3 cut(s)	164, 192, 357
Cfr13I	GGNCC	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	266
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	1 cut(s)	923
DpnI	GATC	4 cut(s)	291, 350, 504, 888
DpnII	GATC	4 cut(s)	289, 348, 502, 886
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Ecl136II	GAGCTC	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	276, 663
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	445
Eco47I	GGWCC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	241
Eco57I	CTGAAG	2 cut(s)	408, 755
Eco88I	CYCGRG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	276, 663
EcoT38I	GRGCYC	1 cut(s)	243
ErhI	CCWWGG	2 cut(s)	276, 663
FaeI	CATG	1 cut(s)	269
FalI	AAGNNNNNCTT	2 cut(s)	811, 843
FaqI	GGGAC	2 cut(s)	80, 919
FatI	CATG	1 cut(s)	265
FbaI	TGATCA	3 cut(s)	289, 348, 886
FblI	GTMKAC	1 cut(s)	793
FokI	GGATG	2 cut(s)	446, 634
FriOI	GRGCYC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	764
GsaI	CCCAGC	1 cut(s)	849
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	275, 662
Hin1II	CATG	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	3 cut(s)	308, 538, 785
HphI	GGTGA	1 cut(s)	781
Hpy166II	GTNNAC	1 cut(s)	794
Hpy188I	TCNGA	3 cut(s)	510, 550, 924
Hpy188III	TCNNGA	5 cut(s)	9, 122, 208, 287, 623
Hpy8I	GTNNAC	1 cut(s)	794
HpyCH4III	ACNGT	1 cut(s)	933
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	6 cut(s)	263, 359, 419, 535, 682, 804
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	1 cut(s)	923
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	269
Ksp22I	TGATCA	3 cut(s)	289, 348, 886
Kzo9I	GATC	4 cut(s)	289, 348, 502, 886
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	2 cut(s)	11, 238
LpnPI	CCDG	9 cut(s)	105, 176, 176, 212, 527, 547, 624, 664, 831
LweI	GCATC	2 cut(s)	126, 428
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	313, 338
MalI	GATC	4 cut(s)	291, 350, 504, 888
MboI	GATC	4 cut(s)	289, 348, 502, 886
MboII	GAAGA	7 cut(s)	147, 260, 414, 497, 533, 748, 865
MhlI	GDGCHC	2 cut(s)	207, 243
MlsI	TGGCCA	1 cut(s)	662
MluCI	AATT	2 cut(s)	374, 544
MluNI	TGGCCA	1 cut(s)	662
MlyI	GAGTC	2 cut(s)	532, 794
MmeI	TCCRAC	2 cut(s)	363, 762
MnlI	CCTC	7 cut(s)	262, 265, 358, 430, 760, 765, 829
Mox20I	TGGCCA	1 cut(s)	662
MroXI	GAANNNNTTC	3 cut(s)	252, 557, 857
MscI	TGGCCA	1 cut(s)	662
MseI	TTAA	6 cut(s)	83, 111, 132, 377, 729, 824
MslI	CAYNNNNRTG	2 cut(s)	475, 687
Msp20I	TGGCCA	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	845
Mva1269I	GAATGC	2 cut(s)	745, 806
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeII	GATC	4 cut(s)	289, 348, 502, 886
NlaIII	CATG	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	338
NspV	TTCGAA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	243
PctI	GAATGC	2 cut(s)	745, 806
PdmI	GAANNNNTTC	3 cut(s)	252, 557, 857
PfeI	GAWTC	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	586
PleI	GAGTC	2 cut(s)	532, 793
PpsI	GAGTC	2 cut(s)	532, 793
PshBI	ATTAAT	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	845
PspPI	GGNCC	1 cut(s)	367
PstI	CTGCAG	1 cut(s)	537
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
RseI	CAYNNNNRTG	2 cut(s)	475, 687
SacI	GAGCTC	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	6 cut(s)	83, 111, 132, 377, 729, 824
Sau3AI	GATC	4 cut(s)	289, 348, 502, 886
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	2 cut(s)	532, 794
SduI	GDGCHC	2 cut(s)	207, 243
SfaNI	GCATC	2 cut(s)	126, 428
SfcI	CTRYAG	1 cut(s)	533
SfuI	TTCGAA	1 cut(s)	391
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	475, 687
Sse9I	AATT	2 cut(s)	374, 544
SspMI	CTAG	1 cut(s)	764
SstI	GAGCTC	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	276, 663
TaaI	ACNGT	1 cut(s)	933
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	391, 465
TasI	AATT	2 cut(s)	374, 544
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	6 cut(s)	83, 111, 132, 377, 729, 824
Tru9I	TTAA	6 cut(s)	83, 111, 132, 377, 729, 824
TscAI	CASTG	1 cut(s)	868
TseFI	GTSAC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	261, 722
TspRI	CASTG	1 cut(s)	868
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	1 cut(s)	367
VspI	ATTAAT	1 cut(s)	377
XapI	RAATTY	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	793
XmnI	GAANNNNTTC	3 cut(s)	252, 557, 857
XspI	CTAG	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.