Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01076

Orthogroup ID

OG0002818

Physical Location & Seq

Genomic Coordinates Reverse (-)

14610 .. 17748

Gene Structure 3139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGTTGAACACCTCTGAAGTCAACAAATTGCAACAAGAGCTTTTGGCCCTGAAACTGACAATTCCCTTTTGGAAATGGAGGAGGAAAGGGGTAATATGGTCTTCGAAGGAGAAGGCTTCAATTGAAGCCATAGAAGATAAAGCAAAGTTATACAAGAGGGAGATTACATCATTCTCAAAGGAAATCCTGGAGAAGTCTTTGGATGTTGATCAACTGCATAATCACCAAGATATATCTGATTCTCCAAGAAAACAGTCTCAAGAACTGTTGAACTCAAATTTGGAGATATGTAAAATTGATGATTTCAAGGAGGTGAATTTGCTTCAGAAGGAGCTGAGTTTTCTTAAAACAGAAAGAGAAGATCTGTTACTTCAAATGCGCGAGTTATCAAAACTTCCTAATGACTTAGAGAATCTCAACAACCAGCTCCTTCTTGTGAAAAAAGAAAAGGATAGATTAGTTACTCAGATTCAAGAGCAGCAGAAACATGTAACAGAAGAACAAAATCGCCATAAACGTAACAGTGACTTGTTAGTGGAGGAGCTGACAAGAAGAATTTCAAGCATGGAAGTCAAGATGCACAATGATCACGTCGAAAACAGCAAGGAAAAGGCAAAGCTTCGAATGAGGCTTCGAGGGACTCAAGCAAAATTAGATGCCTTTTGCTATAGATACAAGGAATCAGAAGGCGAGATCAATCTTATGGACAGAAAATACAAGGAGGCTACAGACGACCTAAAGGATCGCTTAGCGTTAAAAGGAGTTGAGGTCCTCAACCTCAAGAAGGAGCTTGCTGCAAAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000779 GO:0000793 GO:0000819 GO:0001932 GO:0001934 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007088 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009893 GO:0009987 GO:0010562 GO:0010564 GO:0010604 GO:0010965 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019220 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0030071 GO:0030496 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0033674 GO:0034508 GO:0034622 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043515 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051233 GO:0051234 GO:0051246 GO:0051247 GO:0051276 GO:0051303 GO:0051305 GO:0051310 GO:0051315 GO:0051338 GO:0051347 GO:0051382 GO:0051383 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0072686 GO:0080090 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099606 GO:0099607 GO:0140014 GO:1901987 GO:1901990 GO:1902099 GO:1902850 GO:1903047 GO:1905818 GO:1990023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

268

Amino Acids

31.65

Weight (kDa)

8.79

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10180 AT3G10180
fragaria_vesca	FvH4_2g14360 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901
malus_domestica	MD12G1093000.v1.1 MD12G1093100.v1.1 MD14G1085100.v1.1 MD16G1213600.v1.1
prunus_persica	Prupe.7G041000_v2.0.a1 Prupe.7G041000_v2.0.a1 Prupe.7G041000_v2.0.a1
pyrus_communis	pycom12g07820 pycom14g07460
rosa_chinensis	RchiOBHm_Chr1g0323861
rosa_laevigata	RLG00000030251 RLG00000030294
rosa_multiflora	Rmu_co8206848.1_g000001 Rmu_sc0001449.1_g000013
rosa_roxburghii	Rroxscaffold_4G00326290
rosa_rugosa	Rorug01G0040400
rosa_samantha	Rh1AG057600 Rh1BG048700 Rh1CG059000 Rh1DG062900
rosa_wichuraiana	Rw0G023120 Rw0G023130 Rw1G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	381
AclWI	GGATC	1 cut(s)	750
AcsI	RAATTY	3 cut(s)	277, 316, 555
AcuI	CTGAAG	2 cut(s)	36, 308
AfiI	CCNNNNNNNGG	1 cut(s)	784
AflIII	ACRYGT	1 cut(s)	487
AgsI	TTSAA	8 cut(s)	7, 120, 125, 271, 307, 374, 473, 561
AjiI	CACGTC	1 cut(s)	592
AjnI	CCWGG	1 cut(s)	186
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	6 cut(s)	40, 334, 427, 544, 619, 790
AluI	AGCT	6 cut(s)	40, 334, 427, 544, 619, 790
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	750
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	478, 794
ApoI	RAATTY	3 cut(s)	277, 316, 555
Asp700I	GAANNNNTTC	1 cut(s)	556
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	46, 769
AsuHPI	GGTGA	2 cut(s)	215, 325
AsuII	TTCGAA	2 cut(s)	104, 622
AvaII	GGWCC	1 cut(s)	769
BarI	GAAGNNNNNNTAC	2 cut(s)	351, 383
BbsI	GAAGAC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	490, 781
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	2 cut(s)	208, 586
BcoDI	GTCTC	1 cut(s)	261
BfmI	CTRYAG	2 cut(s)	667, 726
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	2 cut(s)	479, 795
BlpI	GCTNAGC	1 cut(s)	748
BlsI	GCNGC	2 cut(s)	480, 796
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	769
BmgBI	CACGTC	1 cut(s)	592
BmgT120I	GGNCC	2 cut(s)	46, 769
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	2 cut(s)	567, 646
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	748
Bpu14I	TTCGAA	2 cut(s)	104, 622
BpuEI	CTTGAG	3 cut(s)	243, 627, 764
BsaBI	GATNNNNATC	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	753, 783
Bsc4I	CCNNNNNNNGG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	784
BseMII	CTCAG	2 cut(s)	326, 479
BseRI	GAGGAG	2 cut(s)	94, 554
BseXI	GCAGC	2 cut(s)	490, 781
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	1 cut(s)	784
BsmAI	GTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	47
Bsp119I	TTCGAA	2 cut(s)	104, 622
Bsp143I	GATC	5 cut(s)	208, 361, 586, 693, 742
Bsp1720I	GCTNAGC	1 cut(s)	748
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	2 cut(s)	327, 478
BspFNI	CGCG	1 cut(s)	381
BspPI	GGATC	1 cut(s)	750
BspT104I	TTCGAA	2 cut(s)	104, 622
BssMI	GATC	5 cut(s)	208, 361, 586, 693, 742
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	3 cut(s)	255, 267, 524
BstBI	TTCGAA	2 cut(s)	104, 622
BstC8I	GCNNGC	1 cut(s)	792
BstDEI	CTNAG	4 cut(s)	335, 406, 465, 748
BstENI	CCTNNNNNAGG	1 cut(s)	782
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	5 cut(s)	211, 364, 589, 696, 745
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	5 cut(s)	208, 361, 586, 693, 742
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	2 cut(s)	667, 726
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	490, 781
BstV2I	GAAGAC	1 cut(s)	93
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	47
BtrI	CACGTC	1 cut(s)	592
BtsCI	GGATG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	1 cut(s)	792
CfoI	GCGC	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	46, 769
CviAII	CATG	2 cut(s)	488, 565
DdeI	CTNAG	4 cut(s)	335, 406, 465, 748
DpnI	GATC	5 cut(s)	210, 363, 588, 695, 744
DpnII	GATC	5 cut(s)	208, 361, 586, 693, 742
Eco47I	GGWCC	1 cut(s)	769
Eco57I	CTGAAG	2 cut(s)	36, 308
EcoNI	CCTNNNNNAGG	1 cut(s)	782
EcoO109I	RGGNCCY	1 cut(s)	769
EcoRII	CCWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	491, 568
FalI	AAGNNNNNCTT	2 cut(s)	731, 763
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	2 cut(s)	487, 564
FbaI	TGATCA	2 cut(s)	208, 586
Fnu4HI	GCNGC	2 cut(s)	479, 795
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	479, 795
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	2 cut(s)	479, 795
GsuI	CTGGAG	1 cut(s)	209
HaeIII	GGCC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	2 cut(s)	491, 568
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HindIII	AAGCTT	1 cut(s)	617
HinfI	GANTC	5 cut(s)	239, 412, 469, 640, 680
HphI	GGTGA	2 cut(s)	215, 325
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	5 cut(s)	16, 238, 327, 468, 685
Hpy188III	TCNNGA	4 cut(s)	260, 473, 574, 781
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	6 cut(s)	100, 106, 322, 440, 680, 778
HpyCH4III	ACNGT	3 cut(s)	255, 267, 524
HpyCH4IV	ACGT	2 cut(s)	517, 591
HpyCH4V	TGCA	4 cut(s)	31, 217, 580, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	4 cut(s)	335, 406, 465, 748
HpySE526I	ACGT	2 cut(s)	517, 591
Hsp92II	CATG	2 cut(s)	491, 568
HspAI	GCGC	1 cut(s)	379
Ksp22I	TGATCA	2 cut(s)	208, 586
Kzo9I	GATC	5 cut(s)	208, 361, 586, 693, 742
LmnI	GCTCC	4 cut(s)	331, 432, 541, 787
LpnPI	CCDG	4 cut(s)	62, 173, 200, 437
Lsp1109I	GCAGC	2 cut(s)	490, 781
LweI	GCATC	2 cut(s)	567, 646
MaeII	ACGT	2 cut(s)	517, 591
MaeIII	GTNAC	5 cut(s)	366, 460, 490, 518, 524
MalI	GATC	5 cut(s)	210, 363, 588, 695, 744
MboI	GATC	5 cut(s)	208, 361, 586, 693, 742
MboII	GAAGA	5 cut(s)	93, 146, 371, 509, 564
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	8 cut(s)	26, 60, 120, 277, 294, 316, 555, 650
MlyI	GAGTC	1 cut(s)	634
MroXI	GAANNNNTTC	1 cut(s)	556
MseI	TTAA	3 cut(s)	345, 755, 805
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	5 cut(s)	208, 361, 586, 693, 742
NlaIII	CATG	2 cut(s)	491, 568
NmuCI	GTSAC	1 cut(s)	524
NspI	RCATGY	1 cut(s)	491
NspV	TTCGAA	2 cut(s)	104, 622
PciI	ACATGT	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	556
PfeI	GAWTC	4 cut(s)	239, 412, 469, 680
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	480, 796
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
PpuMI	RGGWCCY	1 cut(s)	769
PscI	ACATGT	1 cut(s)	487
Psp5II	RGGWCCY	1 cut(s)	769
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	46, 769
PspPPI	RGGWCCY	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	345, 755, 805
SatI	GCNGC	2 cut(s)	479, 795
Sau3AI	GATC	5 cut(s)	208, 361, 586, 693, 742
Sau96I	GGNCC	2 cut(s)	46, 769
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	1 cut(s)	188
SfaNI	GCATC	2 cut(s)	567, 646
SfcI	CTRYAG	2 cut(s)	667, 726
SfuI	TTCGAA	2 cut(s)	104, 622
SinI	GGWCC	1 cut(s)	769
SmlI	CTYRAG	3 cut(s)	258, 642, 779
SmoI	CTYRAG	3 cut(s)	258, 642, 779
Sse9I	AATT	8 cut(s)	26, 60, 120, 277, 294, 316, 555, 650
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	255, 267, 524
TaiI	ACGT	2 cut(s)	520, 594
TaqI	TCGA	4 cut(s)	104, 594, 622, 634
TasI	AATT	8 cut(s)	26, 60, 120, 277, 294, 316, 555, 650
TfiI	GAWTC	4 cut(s)	239, 412, 469, 680
Tru1I	TTAA	3 cut(s)	345, 755, 805
Tru9I	TTAA	3 cut(s)	345, 755, 805
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	2 cut(s)	478, 794
Tsp45I	GTSAC	1 cut(s)	524
TspRI	CASTG	1 cut(s)	529
VpaK11BI	GGWCC	1 cut(s)	769
XagI	CCTNNNNNAGG	1 cut(s)	782
XapI	RAATTY	3 cut(s)	277, 316, 555
XceI	RCATGY	1 cut(s)	491
XmnI	GAANNNNTTC	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.