Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002818

Physical Location & Seq

Genomic Coordinates Reverse (-)

20528267 .. 20531180

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1213600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGTGCAAAAGCAAGCTAAGAAAATTGAGAACCTGAGCTCAATGGTGTTGTATTCAAATAGAGATGAGAATCGCGATCACTTTAAAAAGGTTAGGAGACGTGGTCGTGCCAACTCAAGAACTCAAGACAATCCTCCAATTTTGCCTTCACACGCTTCCTCCTGTTTTATTTGGAGCAATTGGAGATGGCGACCCAAAATAATAACTAGCCAAGGATTATGTGCACTTCACTCCGCAGCGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000779 GO:0000793 GO:0000819 GO:0001932 GO:0001934 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007088 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009893 GO:0009987 GO:0010562 GO:0010564 GO:0010604 GO:0010965 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019220 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0030071 GO:0030496 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0033674 GO:0034508 GO:0034622 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043515 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051233 GO:0051234 GO:0051246 GO:0051247 GO:0051276 GO:0051303 GO:0051305 GO:0051310 GO:0051315 GO:0051338 GO:0051347 GO:0051382 GO:0051383 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0072686 GO:0080090 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099606 GO:0099607 GO:0140014 GO:1901987 GO:1901990 GO:1902099 GO:1902850 GO:1903047 GO:1905818 GO:1990023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

82

Amino Acids

9.43

Weight (kDa)

10.95

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10180 AT3G10180
fragaria_vesca	FvH4_2g14360 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901
malus_domestica	MD12G1093000.v1.1 MD12G1093100.v1.1 MD14G1085100.v1.1 MD16G1213600.v1.1
prunus_persica	Prupe.7G041000_v2.0.a1 Prupe.7G041000_v2.0.a1 Prupe.7G041000_v2.0.a1
pyrus_communis	pycom12g07820 pycom14g07460
rosa_chinensis	RchiOBHm_Chr1g0323861
rosa_laevigata	RLG00000030251 RLG00000030294
rosa_multiflora	Rmu_co8206848.1_g000001 Rmu_sc0001449.1_g000013
rosa_roxburghii	Rroxscaffold_4G00326290
rosa_rugosa	Rorug01G0040400
rosa_samantha	Rh1AG057600 Rh1BG048700 Rh1CG059000 Rh1DG062900
rosa_wichuraiana	Rw0G023120 Rw0G023130 Rw1G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	75
AciI	CCGC	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	57
AjiI	CACGTC	1 cut(s)	101
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	2 cut(s)	17, 39
AluI	AGCT	2 cut(s)	17, 39
Alw21I	GWGCWC	2 cut(s)	41, 226
Alw26I	GTCTC	1 cut(s)	91
Alw44I	GTGCAC	1 cut(s)	222
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	2 cut(s)	41, 226
BccI	CCATC	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	91
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
BmgBI	CACGTC	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	2 cut(s)	100, 108
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	211
BsaXI	ACNNNNNCTCC	4 cut(s)	88, 118, 143, 173
Bse8I	GATNNNNATC	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	75
BsiHKAI	GWGCWC	2 cut(s)	41, 226
BsmAI	GTCTC	1 cut(s)	91
BsmBI	CGTCTC	1 cut(s)	91
Bsp1286I	GDGCHC	2 cut(s)	41, 226
Bsp143I	GATC	1 cut(s)	76
Bsp68I	TCGCGA	1 cut(s)	75
BspACI	CCGC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	75
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	1 cut(s)	76
BssT1I	CCWWGG	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	18, 35
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	79
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	101
BtuMI	TCGCGA	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	15
CviJI	RGCY	3 cut(s)	17, 39, 210
CviKI_1	RGCY	3 cut(s)	17, 39, 210
DdeI	CTNAG	2 cut(s)	18, 35
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DraI	TTTAAA	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	41
Eco53kI	GAGCTC	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	91
FaiI	YATR	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	1 cut(s)	237
HinfI	GANTC	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188III	TCNNGA	3 cut(s)	74, 117, 125
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	7, 224
HpyF3I	CTNAG	2 cut(s)	18, 35
HpySE526I	ACGT	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	2 cut(s)	47, 175
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	100
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MfeI	CAATTG	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	41, 226
MluCI	AATT	4 cut(s)	24, 138, 178, 241
MnlI	CCTC	2 cut(s)	144, 169
MseI	TTAA	1 cut(s)	84
MunI	CAATTG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	75
NdeII	GATC	1 cut(s)	76
NruI	TCGCGA	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	70
PflFI	GACNNNGTC	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	41
PsyI	GACNNNGTC	1 cut(s)	102
RruI	TCGCGA	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	76
SduI	GDGCHC	2 cut(s)	41, 226
SetI	ASST	5 cut(s)	19, 36, 41, 93, 103
SmlI	CTYRAG	2 cut(s)	115, 123
SmoI	CTYRAG	2 cut(s)	115, 123
Sse9I	AATT	4 cut(s)	24, 138, 178, 241
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	207
SstI	GAGCTC	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	211
TaiI	ACGT	1 cut(s)	103
TasI	AATT	4 cut(s)	24, 138, 178, 241
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	1 cut(s)	236
Tth111I	GACNNNGTC	1 cut(s)	102
VneI	GTGCAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.