Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002818

Physical Location & Seq

Genomic Coordinates Reverse (-)

8507111 .. 8510512

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07820.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGGACTGAAGCCTGACATCGGACCACTTCTTCCTTTTGAAGAACTGATGCATGAGATTGAAGTTTCTGACAAAGAGTTTTGCAAAGAAGACGAAGAAAGTAAAAATATCACGTTGGAGGACTGCGGTCTTCCTGATCAGTGGGCTTTATTACATGTTACTAATAGGAGAAAAGTGCCACCCAGGACGAAAGGCTTACCCTTGGTTTGTACTATTAAGATGCTTGAAACAGTGAAGCCTTCAAGCCAGCAAAATTTACATAATGTAGTTGAGCTGGCAACCGAGCAAAACATTTGTGCTCGGGAGAAGTTTGACGAGGAACTTTTGGAACACCAGAATTTGGAAAAGGGAGAATATATTTCTCATATACAAGTTTTTGAAAAAGAAATATCAGGTTTATCATCCTGTTCTTTGGCCAAGGAAAAGGAAAATCTGCGCAAAGATGTTGAGAAAATAAGAATGAAGTTGAAAGAGACAGAGTTTAAGCTGAAGAATGCCATACAAGAGAAAACCAAACTAGAGGGTGAAAAAGTGTCTGCTGAACGAGAAATAAAACGATTGCACAGTCTGAACTCTCTTCTTGAACATGACATGAATACATGCAAGTCACTTGCTGGTAGAAGGCGTGATTCAGTTAATGATAAGGGTTTGAAGACATTGGATCCTAAAAGAGCAAAAAACCTTGCCTTCAAACAGACGTTACAGGTGCTGACAATGATGTCTAGTTTCTGTTCCTTTACTATGCATCAAGTTTGTAATGCAATGCAAGTTATTTTATTTTTAAATGTCAATATGCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000779 GO:0000793 GO:0000819 GO:0001932 GO:0001934 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005828 GO:0005829 GO:0005856 GO:0005871 GO:0005874 GO:0005875 GO:0005876 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007079 GO:0007080 GO:0007088 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008608 GO:0009893 GO:0009987 GO:0010562 GO:0010564 GO:0010604 GO:0010965 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019220 GO:0019222 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0022607 GO:0030071 GO:0030496 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0033674 GO:0034508 GO:0034622 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043515 GO:0043549 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045859 GO:0045860 GO:0045937 GO:0048002 GO:0048193 GO:0048285 GO:0048518 GO:0048522 GO:0050000 GO:0050789 GO:0050790 GO:0050794 GO:0051128 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051233 GO:0051234 GO:0051246 GO:0051247 GO:0051276 GO:0051303 GO:0051305 GO:0051310 GO:0051315 GO:0051338 GO:0051347 GO:0051382 GO:0051383 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070925 GO:0071824 GO:0071840 GO:0072686 GO:0080090 GO:0098687 GO:0098813 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099606 GO:0099607 GO:0140014 GO:1901987 GO:1901990 GO:1902099 GO:1902850 GO:1903047 GO:1905818 GO:1990023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

268

Amino Acids

30.73

Weight (kDa)

7.08

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10180 AT3G10180
fragaria_vesca	FvH4_2g14360 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901 FvH4_7g02901
malus_domestica	MD12G1093000.v1.1 MD12G1093100.v1.1 MD14G1085100.v1.1 MD16G1213600.v1.1
prunus_persica	Prupe.7G041000_v2.0.a1 Prupe.7G041000_v2.0.a1 Prupe.7G041000_v2.0.a1
pyrus_communis	pycom12g07820 pycom14g07460
rosa_chinensis	RchiOBHm_Chr1g0323861
rosa_laevigata	RLG00000030251 RLG00000030294
rosa_multiflora	Rmu_co8206848.1_g000001 Rmu_sc0001449.1_g000013
rosa_roxburghii	Rroxscaffold_4G00326290
rosa_rugosa	Rorug01G0040400
rosa_samantha	Rh1AG057600 Rh1BG048700 Rh1CG059000 Rh1DG062900
rosa_wichuraiana	Rw0G023120 Rw0G023130 Rw1G004920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	718
Acc16I	TGCGCA	1 cut(s)	437
AccB7I	CCANNNNNTGG	1 cut(s)	340
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	2 cut(s)	656, 669
AcoI	YGGCCR	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	253, 337
AcuI	CTGAAG	2 cut(s)	29, 509
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	20, 340
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	9 cut(s)	41, 62, 227, 243, 380, 469, 584, 652, 691
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	2 cut(s)	274, 487
AluI	AGCT	2 cut(s)	274, 487
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	2 cut(s)	656, 669
AlwNI	CAGNNNCTG	1 cut(s)	709
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	1 cut(s)	414
ApoI	RAATTY	2 cut(s)	253, 337
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	536
AvaI	CYCGRG	1 cut(s)	300
AvaII	GGWCC	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	416
BamHI	GGATCC	1 cut(s)	661
BbsI	GAAGAC	3 cut(s)	96, 122, 659
Bbv12I	GWGCWC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	184
BclI	TGATCA	1 cut(s)	136
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	2 cut(s)	518, 723
Bme1390I	CCNGG	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	1 cut(s)	184
BmsI	GCATC	3 cut(s)	39, 210, 754
BoxI	GACNNNNGTC	1 cut(s)	126
BpiI	GAAGAC	3 cut(s)	96, 122, 659
BsaJI	CCNNGG	3 cut(s)	182, 201, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 340
Bse3DI	GCAATG	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	3 cut(s)	182, 201, 417
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	2 cut(s)	20, 340
BseMI	GCAATG	1 cut(s)	768
BshFI	GGCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	20, 340
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	136, 661
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	663
BspPI	GGATC	2 cut(s)	656, 669
BsrDI	GCAATG	1 cut(s)	768
BssECI	CCNNGG	3 cut(s)	182, 201, 417
BssMI	GATC	2 cut(s)	136, 661
BssT1I	CCWWGG	2 cut(s)	201, 417
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	232, 566
Bst6I	CTCTTC	1 cut(s)	582
BstC8I	GCNNGC	2 cut(s)	248, 276
BstF5I	GGATG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	2 cut(s)	139, 664
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	2 cut(s)	136, 661
BstNI	CCWGG	1 cut(s)	184
BstNSI	RCATGY	2 cut(s)	158, 603
BstPAI	GACNNNNGTC	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	182
BstV2I	GAAGAC	3 cut(s)	96, 122, 659
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	401
BtsIMutI	CAGTG	2 cut(s)	146, 237
Cac8I	GCNNGC	2 cut(s)	248, 276
CaiI	CAGNNNCTG	1 cut(s)	709
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	5 cut(s)	53, 155, 587, 592, 600
CviJI	RGCY	8 cut(s)	13, 146, 195, 238, 246, 274, 416, 487
CviKI_1	RGCY	8 cut(s)	13, 146, 195, 238, 246, 274, 416, 487
CviQI	GTAC	1 cut(s)	210
DpnI	GATC	2 cut(s)	138, 663
DpnII	GATC	2 cut(s)	136, 661
DraI	TTTAAA	1 cut(s)	783
DrdI	GACNNNNNNGTC	1 cut(s)	718
DseDI	GACNNNNNNGTC	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
Eco130I	CCWWGG	2 cut(s)	201, 417
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	2 cut(s)	29, 509
Eco88I	CYCGRG	1 cut(s)	300
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	2 cut(s)	201, 417
EcoT22I	ATGCAT	2 cut(s)	54, 747
ErhI	CCWWGG	2 cut(s)	201, 417
FaeI	CATG	5 cut(s)	56, 158, 590, 595, 603
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	5 cut(s)	52, 154, 586, 591, 599
FbaI	TGATCA	1 cut(s)	136
FokI	GGATG	1 cut(s)	388
FspBI	CTAG	2 cut(s)	518, 723
FspI	TGCGCA	1 cut(s)	437
GlaI	GCGC	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	416
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	5 cut(s)	56, 158, 590, 595, 603
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HinfI	GANTC	1 cut(s)	629
HphI	GGTGA	1 cut(s)	536
Hpy188I	TCNGA	3 cut(s)	23, 70, 570
Hpy188III	TCNNGA	3 cut(s)	134, 302, 581
HpyAV	CCTTC	3 cut(s)	249, 615, 697
HpyCH4III	ACNGT	2 cut(s)	232, 566
HpyCH4IV	ACGT	2 cut(s)	113, 698
HpyCH4V	TGCA	7 cut(s)	52, 84, 562, 603, 745, 761, 766
HpySE526I	ACGT	2 cut(s)	113, 698
Hsp92II	CATG	5 cut(s)	56, 158, 590, 595, 603
HspAI	GCGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	136, 661
LweI	GCATC	3 cut(s)	39, 210, 754
MaeI	CTAG	2 cut(s)	518, 723
MaeII	ACGT	2 cut(s)	113, 698
MaeIII	GTNAC	3 cut(s)	157, 606, 699
MalI	GATC	2 cut(s)	138, 663
MboI	GATC	2 cut(s)	136, 661
MboII	GAAGA	8 cut(s)	23, 53, 101, 107, 122, 502, 569, 664
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	2 cut(s)	253, 337
MluNI	TGGCCA	1 cut(s)	416
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	112, 310, 514
Mox20I	TGGCCA	1 cut(s)	416
Mph1103I	ATGCAT	2 cut(s)	54, 747
MscI	TGGCCA	1 cut(s)	416
MseI	TTAA	4 cut(s)	216, 483, 636, 782
Msp20I	TGGCCA	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	184
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	136, 661
NlaIII	CATG	5 cut(s)	56, 158, 590, 595, 603
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	1 cut(s)	606
NsbI	TGCGCA	1 cut(s)	437
NsiI	ATGCAT	2 cut(s)	54, 747
NspI	RCATGY	2 cut(s)	158, 603
PciI	ACATGT	1 cut(s)	154
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	629
PflMI	CCANNNNNTGG	1 cut(s)	340
PscI	ACATGT	1 cut(s)	154
PshAI	GACNNNNGTC	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SaqAI	TTAA	4 cut(s)	216, 483, 636, 782
Sau3AI	GATC	2 cut(s)	136, 661
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	184
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	7 cut(s)	116, 276, 397, 489, 684, 701, 708
SfaNI	GCATC	3 cut(s)	39, 210, 754
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	253, 337
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	2 cut(s)	518, 723
StyD4I	CCNGG	1 cut(s)	182
StyI	CCWWGG	2 cut(s)	201, 417
TaaI	ACNGT	2 cut(s)	232, 566
TaiI	ACGT	2 cut(s)	116, 701
TasI	AATT	2 cut(s)	253, 337
TatI	WGTACW	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	629
Tru1I	TTAA	4 cut(s)	216, 483, 636, 782
Tru9I	TTAA	4 cut(s)	216, 483, 636, 782
TscAI	CASTG	2 cut(s)	146, 237
TseFI	GTSAC	1 cut(s)	606
Tsp45I	GTSAC	1 cut(s)	606
TspDTI	ATGAA	2 cut(s)	476, 608
TspRI	CASTG	2 cut(s)	146, 237
Van91I	CCANNNNNTGG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	2 cut(s)	253, 337
XceI	RCATGY	2 cut(s)	158, 603
XspI	CTAG	2 cut(s)	518, 723
Zsp2I	ATGCAT	2 cut(s)	54, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.