FvH4_2g16610

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0010891
Physical Location & Seq
Forward (+)
14486096 .. 14490187
4092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16610.t2

Sequence Viewer

Length: 1680 bp
ATGGGGGCTGAGGGTGATTCAAGCGAGCCTAAAGTAGGTGGGGAAGGAGGAGAGCTTATCAATATTCGGTGCTCTAATGGGTCCAAGTTCTCGGTGAGGGCGTGTTTGGATATCGATGTTGGGGCCTTCAAGGCGATTTTGGCTCAGAATTGTGATATTCCAGCTGATCAGCAACGATTGATTTACAAAGGTCGTATCTTGAAGGATGACCAAACCCTCATCAGCTATGGTTTGCAGGCAGATCATACTGTCCACATGGTTCGCGCCTTTGCACCTGGTGCCTCGACCACACCAGCTGCGCCCGCTGCTAATGCTACTTCTGCAAGTCCCAACGCTGCGGCAGGTGTCACTCGTGGTGTTGGTTCCGAGGGGGTTGGGAATCCCGACCTTGGGGGGTCTTTGCTATTTGGGCAGGGTTTAGGTCTTGGTGGTAGTGGTGGAGCGGCTGGTTTATTTGGGAGTGGGCTTCCGGAATTTGATCAAGTGCAGCAGCAACTAACTCAGAACCCGAACATGATGAGGGATATAATGAACACTCCTGCCATCCAAAGTCTTATGAATAACCCTGAGCTGATGCGAGGCTTGATCATGAACAATCCACAAATGCGTGACATCATTGACCGGAACCCAGAGCTTGCGCATATACTTAATGATCCTGGCATTCTTCGACAGACACTAGAAGCTGCTAGGAACCCTGAACTCATGCGTGAGATGATGCGAAACACTGACAGGGCAATGAGTAATATTGAATCTTCGCCTGAGGGATTCAACATGCTGAGACGGATGTATGAAAATGTTCAGGAGCCGTTTTTGAACGCTACCACAATGTCCGGGAATGCTGGGAACGATGCGGCTTCAAACCCCTTTGCTGCTCTTTTAGGGAATCAGGGTGGGGCACAAGCCAGGAATGGGACTAACAACCCTTCAACCACCGGTTCAGAAACTACTGCAGGTTCTGCGATTCCTAATGCAAACCCTCTTCCCAACCCTTGGAGCAATACTACTGGAGGAAATCAAACAAACGCACCCAGGTCTACTCCTGCTGGGGATGGGAGAGCACCAAATATTGGTGGTCTTGGAGGTCTTGGAGGTTTGGGAGGTCTTGGTGGTCTTTCTGGAATGGAACAAATGCTGGGTGGCATGCCAGACGCTAATGCAATGAATCAGCTTATGCAGAATCCAGCAATATCTCAGATGATGCAAAGCATGCTCTCAAATCCCCAATATATGAATCAGATCCTGAACCTCAATCCACAACTACGCGCTATGGTTGATGTAAATCCTCAACTTAGAGAAATGATGCAAAATCCAGAGCTTCTACGTCAGTTGACAAACCCTGAGACAATGCAGCAAATGCTTGCATTACAGCAGTCGCTATTTTCTCAGACCAATCGACAGCCATCAACTCAGGATCCAACTCAGACTGGTGGTGCTACAGGGATTCCAAATAATGGTGCTGGACTGGAGATGTTGATGAACATGTTTGGTGGTCTTGGAGCTGGCAGCTTGGCCGCACCAGCCAGCAATGTACCACCAGAGGAACGTTATGCAACTCAGCTGTCACAACTTCAAGAAATGGGTTTCTTCGATACTCAAGAGAATATTAGGGCATTGCAAGCCACTTCCGGGAATGTCCATGCTGCAGTAGAGCGACTTTTAGGGAATCCACCTGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005776 GO:0005783 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006950 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010604 GO:0010646 GO:0010941 GO:0010959 GO:0012505 GO:0016020 GO:0016043 GO:0016234 GO:0016235 GO:0016236 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019941 GO:0022411 GO:0022607 GO:0022898 GO:0023051 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031593 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032434 GO:0032436 GO:0032879 GO:0032984 GO:0032991 GO:0033554 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0034976 GO:0035973 GO:0036293 GO:0036294 GO:0036503 GO:0042176 GO:0042221 GO:0042802 GO:0042981 GO:0043067 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043271 GO:0043632 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051924 GO:0051926 GO:0060255 GO:0061136 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070013 GO:0070482 GO:0070887 GO:0070925 GO:0071453 GO:0071456 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097352 GO:0140030 GO:1900407 GO:1901019 GO:1901020 GO:1901339 GO:1901340 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902175 GO:1902531 GO:1902882 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903169 GO:1903170 GO:1903201 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1904062 GO:1904063 GO:1904292 GO:1904294 GO:1905037 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2001233 GO:2001242 GO:2001257 GO:2001258
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
UBA ubiquitin

Protein Analysis

560

Amino Acids

58.66

Weight (kDa)

4.8

Isoelectric Point (pI)

42.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 20 - 88 1.4e-17 Ubiquitin family
Rad60-SLD PF11976 20 - 87 3.4e-06 Ubiquitin-2 like Rad60 SUMO-like
UBQLN1 PF23195 165 - 290 1.7e-51 Ubiquilin-1-like domain
UBQLN1 PF23195 384 - 449 2.4e-10 Ubiquilin-1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17190 AT2G17200
fragaria_vesca FvH4_2g16610 FvH4_2g16610
malus_domestica MD05G1134300.v1.1 MD10G1139400.v1.1
prunus_persica Prupe.8G178100_v2.0.a1
pyrus_communis pycom05g13090 pycom10g11840
rosa_chinensis RchiOBHm_Chr6g0280671
rosa_laevigata RLG00000013037
rosa_roxburghii Rroxscaffold_7G00187770
rosa_rugosa Rorug06G0133800 Rorug06G0133800 Rorug06G0133800
rosa_samantha Rh6AG246300 Rh6BG248500 Rh6CG249800 Rh6DG241200
rosa_wichuraiana Rw6G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 332
Acc16I TGCGCA 1 cut(s) 639
Acc36I ACCTGC 2 cut(s) 332, 941
AccB1I GGYRCC 1 cut(s) 278
AccB7I CCANNNNNTGG 3 cut(s) 990, 1067, 1451
AccBSI CCGCTC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 1034
AccII CGCG 2 cut(s) 264, 1263
AccIII TCCGGA 1 cut(s) 469
AciI CCGC 5 cut(s) 303, 338, 443, 851, 1512
AclI AACGTT 1 cut(s) 1543
AclWI GGATC 4 cut(s) 647, 1231, 1406, 1419
AcoI YGGCCR 1 cut(s) 1509
AcsI RAATTY 1 cut(s) 473
AdeI CACNNNGTG 1 cut(s) 278
AfaI GTAC 1 cut(s) 1530
AfiI CCNNNNNNNGG 8 cut(s) 35, 389, 390, 909, 990, 1067, 1451, 1626
AflIII ACRYGT 1 cut(s) 1479
AgeI ACCGGT 1 cut(s) 932
AgsI TTSAA 9 cut(s) 21, 130, 202, 749, 769, 814, 858, 927, 1571
AjnI CCWGG 5 cut(s) 274, 655, 902, 1028, 1669
Alw21I GWGCWC 2 cut(s) 74, 1060
Alw26I GTCTC 2 cut(s) 772, 1334
AlwI GGATC 4 cut(s) 647, 1231, 1406, 1419
AlwNI CAGNNNCTG 2 cut(s) 956, 1240
Aor13HI TCCGGA 1 cut(s) 469
AoxI GGCC 2 cut(s) 123, 1509
ApoI RAATTY 1 cut(s) 473
AsiGI ACCGGT 1 cut(s) 932
Asp700I GAANNNNTTC 1 cut(s) 795
AspLEI GCGC 4 cut(s) 266, 301, 640, 1265
AspS9I GGNCC 2 cut(s) 81, 123
AsuC2I CCSGG 2 cut(s) 832, 1627
AsuHPI GGTGA 2 cut(s) 26, 106
AvaII GGWCC 1 cut(s) 81
AxyI CCTNAGG 1 cut(s) 759
BaeGI GKGCMC 1 cut(s) 898
BamHI GGATCC 1 cut(s) 1411
BanI GGYRCC 1 cut(s) 278
BauI CACGAG 1 cut(s) 351
Bbv12I GWGCWC 2 cut(s) 74, 1060
BbvCI CCTCAGC 1 cut(s) 9
BccI CCATC 3 cut(s) 551, 1043, 1408
BceAI ACGGC 1 cut(s) 790
BciT130I CCWGG 5 cut(s) 276, 657, 904, 1030, 1671
BclI TGATCA 3 cut(s) 166, 478, 585
BcnI CCSGG 2 cut(s) 832, 1627
BcoDI GTCTC 2 cut(s) 772, 1334
BfaI CTAG 2 cut(s) 677, 687
BfmI CTRYAG 3 cut(s) 948, 1434, 1641
BfuAI ACCTGC 2 cut(s) 332, 941
BglI GCCNNNNNGGC 1 cut(s) 131
Bme1390I CCNGG 7 cut(s) 276, 657, 832, 904, 1030, 1627, 1671
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 2 cut(s) 81, 123
BmiI GGNNCC 8 cut(s) 82, 124, 280, 364, 626, 692, 804, 1413
BmrFI CCNGG 7 cut(s) 276, 657, 832, 904, 1030, 1627, 1671
BmsI GCATC 5 cut(s) 564, 705, 838, 1188, 1290
BpmI CTGGAG 2 cut(s) 1026, 1484
Bpu10I CCTNAGC 2 cut(s) 9, 567
BpuEI CTTGAG 1 cut(s) 1578
BpuMI CCSGG 2 cut(s) 832, 1627
Bsa29I ATCGAT 1 cut(s) 114
BsaBI GATNNNNATC 1 cut(s) 1278
BsaJI CCNNGG 4 cut(s) 366, 388, 989, 1028
BsaWI WCCGGW 3 cut(s) 469, 621, 932
Bsc4I CCNNNNNNNGG 8 cut(s) 35, 389, 390, 909, 990, 1067, 1451, 1626
Bse118I RCCGGY 1 cut(s) 932
Bse1I ACTGG 3 cut(s) 1009, 1429, 1467
Bse21I CCTNAGG 1 cut(s) 759
Bse3DI GCAATG 4 cut(s) 741, 1164, 1531, 1610
Bse8I GATNNNNATC 1 cut(s) 1278
BseAI TCCGGA 1 cut(s) 469
BseBI CCWGG 5 cut(s) 276, 657, 904, 1030, 1671
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 4 cut(s) 366, 388, 989, 1028
BseGI GGATG 4 cut(s) 211, 543, 789, 1054
BseJI GATNNNNATC 1 cut(s) 1278
BseLI CCNNNNNNNGG 8 cut(s) 35, 389, 390, 909, 990, 1067, 1451, 1626
BseMI GCAATG 4 cut(s) 741, 1164, 1531, 1610
BseNI ACTGG 3 cut(s) 1009, 1429, 1467
BseRI GAGGAG 1 cut(s) 63
BseSI GKGCMC 1 cut(s) 898
BseYI CCCAGC 3 cut(s) 839, 1043, 1132
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 2 cut(s) 264, 1263
BshFI GGCC 2 cut(s) 125, 1511
BshNI GGYRCC 1 cut(s) 278
BshTI ACCGGT 1 cut(s) 932
BshVI ATCGAT 1 cut(s) 114
BsiHKAI GWGCWC 2 cut(s) 74, 1060
BsiSI CCGG 5 cut(s) 470, 622, 831, 933, 1626
BslFI GGGAC 2 cut(s) 312, 925
BslI CCNNNNNNNGG 8 cut(s) 35, 389, 390, 909, 990, 1067, 1451, 1626
BsmAI GTCTC 2 cut(s) 772, 1334
BsmBI CGTCTC 1 cut(s) 772
BsmFI GGGAC 2 cut(s) 312, 925
BsmI GAATGC 2 cut(s) 660, 841
BsnI GGCC 2 cut(s) 125, 1511
Bsp1286I GDGCHC 3 cut(s) 74, 898, 1060
Bsp13I TCCGGA 1 cut(s) 469
Bsp143I GATC 7 cut(s) 166, 241, 478, 585, 652, 1236, 1411
BspACI CCGC 5 cut(s) 303, 338, 443, 851, 1512
BspANI GGCC 2 cut(s) 125, 1511
BspDI ATCGAT 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 469
BspFNI CGCG 2 cut(s) 264, 1263
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 8 cut(s) 82, 124, 280, 364, 626, 692, 804, 1413
BspMAI CTGCAG 2 cut(s) 952, 1645
BspMI ACCTGC 2 cut(s) 332, 941
BspPI GGATC 4 cut(s) 647, 1231, 1406, 1419
BspT107I GGYRCC 1 cut(s) 278
BsrBI CCGCTC 1 cut(s) 443
BsrDI GCAATG 4 cut(s) 741, 1164, 1531, 1610
BsrFI RCCGGY 1 cut(s) 932
BsrI ACTGG 3 cut(s) 1009, 1429, 1467
BssAI RCCGGY 1 cut(s) 932
BssECI CCNNGG 4 cut(s) 366, 388, 989, 1028
BssMI GATC 7 cut(s) 166, 241, 478, 585, 652, 1236, 1411
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 2 cut(s) 388, 989
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 5 cut(s) 276, 657, 904, 1030, 1671
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 984
BstAPI GCANNNNNTGC 4 cut(s) 278, 956, 1207, 1354
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 4 cut(s) 211, 543, 789, 1054
BstFNI CGCG 2 cut(s) 264, 1263
BstHHI GCGC 4 cut(s) 266, 301, 640, 1265
BstKTI GATC 7 cut(s) 169, 244, 481, 588, 655, 1239, 1414
BstMAI GTCTC 2 cut(s) 772, 1334
BstMBI GATC 7 cut(s) 166, 241, 478, 585, 652, 1236, 1411
BstNI CCWGG 5 cut(s) 276, 657, 904, 1030, 1671
BstNSI RCATGY 4 cut(s) 775, 1144, 1210, 1483
BstSCI CCNGG 7 cut(s) 274, 655, 830, 902, 1028, 1625, 1669
BstSFI CTRYAG 3 cut(s) 948, 1434, 1641
BstSLI GKGCMC 1 cut(s) 898
BstUI CGCG 2 cut(s) 264, 1263
BstX2I RGATCY 2 cut(s) 1236, 1411
BstYI RGATCY 2 cut(s) 1236, 1411
Bsu15I ATCGAT 1 cut(s) 114
Bsu36I CCTNAGG 1 cut(s) 759
BsuRI GGCC 2 cut(s) 125, 1511
BsuTUI ATCGAT 1 cut(s) 114
BtsCI GGATG 4 cut(s) 211, 543, 789, 1054
BtsIMutI CAGTG 1 cut(s) 723
BveI ACCTGC 2 cut(s) 332, 941
CaiI CAGNNNCTG 2 cut(s) 956, 1240
CciI TCATGA 1 cut(s) 588
CfoI GCGC 4 cut(s) 266, 301, 640, 1265
Cfr10I RCCGGY 1 cut(s) 932
Cfr13I GGNCC 2 cut(s) 81, 123
ClaI ATCGAT 1 cut(s) 114
CseI GACGC 1 cut(s) 1157
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 1 cut(s) 1529
CspAI ACCGGT 1 cut(s) 932
CviAII CATG 9 cut(s) 256, 514, 589, 703, 772, 1141, 1207, 1480, 1637
CviQI GTAC 1 cut(s) 1529
DpnI GATC 7 cut(s) 168, 243, 480, 587, 654, 1238, 1413
DpnII GATC 7 cut(s) 166, 241, 478, 585, 652, 1236, 1411
DraIII CACNNNGTG 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 1509
Eam1104I CTCTTC 1 cut(s) 984
EarI CTCTTC 1 cut(s) 984
Eco130I CCWWGG 2 cut(s) 388, 989
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 759
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 123
EcoRII CCWGG 5 cut(s) 274, 655, 902, 1028, 1669
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 388, 989
ErhI CCWWGG 2 cut(s) 388, 989
Esp3I CGTCTC 1 cut(s) 772
FaeI CATG 9 cut(s) 259, 517, 592, 706, 775, 1144, 1210, 1483, 1640
FaqI GGGAC 2 cut(s) 312, 925
FatI CATG 9 cut(s) 255, 513, 588, 702, 771, 1140, 1206, 1479, 1636
FauI CCCGC 1 cut(s) 310
FbaI TGATCA 3 cut(s) 166, 478, 585
FblI GTMKAC 1 cut(s) 1034
FokI GGATG 4 cut(s) 218, 530, 796, 1061
FspBI CTAG 2 cut(s) 677, 687
FspI TGCGCA 1 cut(s) 639
GlaI GCGC 4 cut(s) 265, 300, 639, 1264
GsaI CCCAGC 3 cut(s) 843, 1047, 1136
GsuI CTGGAG 2 cut(s) 1026, 1484
HaeIII GGCC 2 cut(s) 125, 1511
HapII CCGG 5 cut(s) 470, 622, 831, 933, 1626
HgaI GACGC 1 cut(s) 1157
HhaI GCGC 4 cut(s) 266, 301, 640, 1265
Hin1II CATG 9 cut(s) 259, 517, 592, 706, 775, 1144, 1210, 1483, 1640
Hin6I GCGC 4 cut(s) 264, 299, 638, 1263
HinP1I GCGC 4 cut(s) 264, 299, 638, 1263
HincII GTYRAC 1 cut(s) 1329
HindII GTYRAC 1 cut(s) 1329
HpaII CCGG 5 cut(s) 470, 622, 831, 933, 1626
HphI GGTGA 2 cut(s) 26, 106
Hpy166II GTNNAC 3 cut(s) 253, 1035, 1329
Hpy188I TCNGA 8 cut(s) 147, 367, 504, 940, 1194, 1236, 1386, 1422
Hpy8I GTNNAC 3 cut(s) 253, 1035, 1329
HpyAV CCTTC 4 cut(s) 38, 136, 196, 933
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4IV ACGT 2 cut(s) 1321, 1543
HpySE526I ACGT 2 cut(s) 1321, 1543
Hsp92II CATG 9 cut(s) 259, 517, 592, 706, 775, 1144, 1210, 1483, 1640
HspAI GCGC 4 cut(s) 264, 299, 638, 1263
Kpn2I TCCGGA 1 cut(s) 469
Ksp22I TGATCA 3 cut(s) 166, 478, 585
Kzo9I GATC 7 cut(s) 166, 241, 478, 585, 652, 1236, 1411
LmnI GCTCC 5 cut(s) 440, 802, 993, 1496, 1673
LweI GCATC 5 cut(s) 564, 705, 838, 1188, 1290
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 2 cut(s) 677, 687
MaeII ACGT 2 cut(s) 1321, 1543
MaeIII GTNAC 3 cut(s) 346, 608, 1560
MalI GATC 7 cut(s) 168, 243, 480, 587, 654, 1238, 1413
MbiI CCGCTC 1 cut(s) 443
MboI GATC 7 cut(s) 166, 241, 478, 585, 652, 1236, 1411
MboII GAAGA 4 cut(s) 656, 744, 971, 1576
MflI RGATCY 2 cut(s) 1236, 1411
MhlI GDGCHC 3 cut(s) 74, 898, 1060
MluCI AATT 2 cut(s) 148, 473
MmeI TCCRAC 1 cut(s) 1439
MroI TCCGGA 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 795
MseI TTAA 1 cut(s) 648
MspA1I CMGCKG 4 cut(s) 164, 296, 305, 1558
MspI CCGG 5 cut(s) 470, 622, 831, 933, 1626
MspR9I CCNGG 7 cut(s) 276, 657, 832, 904, 1030, 1627, 1671
Mva1269I GAATGC 2 cut(s) 660, 841
MvaI CCWGG 5 cut(s) 276, 657, 904, 1030, 1671
MvnI CGCG 2 cut(s) 264, 1263
NciI CCSGG 2 cut(s) 832, 1627
NdeII GATC 7 cut(s) 166, 241, 478, 585, 652, 1236, 1411
NlaIII CATG 9 cut(s) 259, 517, 592, 706, 775, 1144, 1210, 1483, 1640
NlaIV GGNNCC 8 cut(s) 82, 124, 280, 364, 626, 692, 804, 1413
NmuCI GTSAC 3 cut(s) 346, 608, 1560
NsbI TGCGCA 1 cut(s) 639
NspI RCATGY 4 cut(s) 775, 1144, 1210, 1483
PaeI GCATGC 2 cut(s) 1144, 1210
PagI TCATGA 1 cut(s) 588
PaqCI CACCTGC 1 cut(s) 332
PciI ACATGT 1 cut(s) 1479
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PctI GAATGC 2 cut(s) 660, 841
PdmI GAANNNNTTC 1 cut(s) 795
PflMI CCANNNNNTGG 3 cut(s) 990, 1067, 1451
PfoI TCCNGGA 2 cut(s) 830, 1625
PinAI ACCGGT 1 cut(s) 932
PscI ACATGT 1 cut(s) 1479
Psp1406I AACGTT 1 cut(s) 1543
Psp6I CCWGG 5 cut(s) 274, 655, 902, 1028, 1669
PspFI CCCAGC 3 cut(s) 839, 1043, 1132
PspGI CCWGG 5 cut(s) 274, 655, 902, 1028, 1669
PspN4I GGNNCC 8 cut(s) 82, 124, 280, 364, 626, 692, 804, 1413
PspPI GGNCC 2 cut(s) 81, 123
PstI CTGCAG 2 cut(s) 952, 1645
PstNI CAGNNNCTG 2 cut(s) 956, 1240
PsuI RGATCY 2 cut(s) 1236, 1411
PvuII CAGCTG 3 cut(s) 164, 296, 1558
RsaI GTAC 1 cut(s) 1530
RsaNI GTAC 1 cut(s) 1529
SaqAI TTAA 1 cut(s) 648
Sau3AI GATC 7 cut(s) 166, 241, 478, 585, 652, 1236, 1411
Sau96I GGNCC 2 cut(s) 81, 123
ScrFI CCNGG 7 cut(s) 276, 657, 832, 904, 1030, 1627, 1671
SduI GDGCHC 3 cut(s) 74, 898, 1060
SexAI ACCWGGT 1 cut(s) 274
SfaNI GCATC 5 cut(s) 564, 705, 838, 1188, 1290
SfcI CTRYAG 3 cut(s) 948, 1434, 1641
SinI GGWCC 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 1593
SmoI CTYRAG 1 cut(s) 1593
SphI GCATGC 2 cut(s) 1144, 1210
Sse9I AATT 2 cut(s) 148, 473
SsiI CCGC 5 cut(s) 303, 338, 443, 851, 1512
SspI AATATT 4 cut(s) 64, 745, 1066, 1603
SspMI CTAG 2 cut(s) 677, 687
StyD4I CCNGG 7 cut(s) 274, 655, 830, 902, 1028, 1625, 1669
StyI CCWWGG 2 cut(s) 388, 989
TaaI ACNGT 1 cut(s) 250
TaiI ACGT 2 cut(s) 1324, 1546
TaqI TCGA 5 cut(s) 114, 284, 667, 1393, 1587
TasI AATT 2 cut(s) 148, 473
TauI GCSGC 4 cut(s) 341, 446, 854, 1514
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 1 cut(s) 730
TseFI GTSAC 3 cut(s) 346, 608, 1560
Tsp45I GTSAC 3 cut(s) 346, 608, 1560
TspDTI ATGAA 7 cut(s) 545, 572, 605, 804, 1175, 1244, 1490
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 1 cut(s) 730
Van91I CCANNNNNTGG 3 cut(s) 990, 1067, 1451
VpaK11BI GGWCC 1 cut(s) 81
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 1 cut(s) 473
XceI RCATGY 4 cut(s) 775, 1144, 1210, 1483
XmiI GTMKAC 1 cut(s) 1034
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 2 cut(s) 677, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.