Rroxscaffold_7G00187770

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010891
Physical Location & Seq
Reverse (-)
27219303 .. 27222695
3393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187770.1

Sequence Viewer

Length: 1623 bp
ATGGGGGTTGAGGGCGATTCAAGCGAGCCTAAAGTAGGTGGTGGAGAAGGCGGAGAGCTGATTAATATTCGGTGCTCTAATGGGTCCAAGTTTTCGGTCAGGGCGGCTTTGGATATCGATGTTGGGGCATTCAAGGCGATTTTGGCTCAGAATTGTGATATTCCAGCTGATCAGCAAAGGTTGATTTACAAAGGTCGGATTTTGAAGGACGACCAGACCCTCACAAGTTATGGTTTGCAGGCAGATCATACCGTTCACATGGTTCGTGCCTTTGCTCCGGGTGCCTCAACAACACCAGCTGCTCCCGCCGCTAATGCTACTTCTGCAAGTCCCAACACTGCAGCTGCAGCTGGTGTTACTCGTGGTGGTTTGGGTGGTCTTGGTAGTGGTGGAGCACCTGGTAGTTTATTTGGGAGTGGGCTTCCGGAATTTGACCAAGTGCAGCAGCAACTAACTCAGAACCCGAACATGTTGAGGGATATAATGAATACGCCTGCCATTCAGAGTCTTATGAATAACCCTGAGTTGATGCGAGGCTTGATCATGAACAATCCACAAATGCGTGACATCATTGACCGGAACCCAGAGCTTGCACATATACTTAATGATCCTGGTATTCTTAGACAGACACTAGAAGCTGCAAGGAACCCTGAACTCATGCGTGAGATGATGCGAAACACTGACAGGGCAATGAGTAATATTGAATCTTCGCCTGAGGGGTTCAACATGCTGCGACGAATGTATGAAAATGTTCAGGAGCCATTTTTGAACGCTACCACTATGACCGGGAATGCTGGGAATGATGCCGCTGCAAACCCCTTTGCTGCTCTTTTAGGGAATCAGGGAGGGGCACAGGCCAGGGATGGGACTAACAACCCTTCAACCACCGGTTCAGAAACTACTGCAGGTTCTGCAATTCCTAATGCAAACCCTCTTCCCAACCCTTGGAGCAATACTACTGGAGGAAATCAAACAAACGCACCCAGGTCAACTCCTGCTGGGGATGGGAGGGCACCAAGTATTGGCGGTCTTGGAGGTCTGGGAGGTCTAGGAGGTCTGGGAGGTCTGGGAGGTCTTGGTGGTCTTTCGGGAATGGAACAAATGATGGGTAGCATGCCAGACGCTAATGCAGTGAATCAGCTCATGCAGAATCCAGCAATATCACAGATGATGCAAAACGTGCTCTCTAATCCCCAATATATGAATCAGATCCTGAACCTCAATCCTCAACTTAGAGAAATGATGCAAAATCCAGAGCTTCTACGTCAGTTGACAAACCCTGAGACAATGCAGCAAATGCTTGCATTTCAGCAGTCACTACTTTCTCAGACCAATCGACAGCCATCAACTCAGGATCCAACTCAGACTGGTGGTGCTACAGGAACCCCCAATAATGGTGCCGGACTGGAGATGCTGATGAACATGTTCGGTGGTCTTGGAGCTGGCAGCTTGGCTGCACCAGTCAGCAATGTACCACCGGAGGAACGTTATGCAACTCAGCTGTCACAACTTCAAGAAATGGGTTTCTTTGATACTCAAGAGAATATCAGGGCATTGCAAGCCACTTCCGGGAATGTCCATGCTGCAGTAGAGCGACTTTTAGGGAACCCACCAGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005776 GO:0005783 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006950 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010604 GO:0010646 GO:0010941 GO:0010959 GO:0012505 GO:0016020 GO:0016043 GO:0016234 GO:0016235 GO:0016236 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019941 GO:0022411 GO:0022607 GO:0022898 GO:0023051 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031593 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032434 GO:0032436 GO:0032879 GO:0032984 GO:0032991 GO:0033554 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0034976 GO:0035973 GO:0036293 GO:0036294 GO:0036503 GO:0042176 GO:0042221 GO:0042802 GO:0042981 GO:0043067 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043271 GO:0043632 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051924 GO:0051926 GO:0060255 GO:0061136 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070013 GO:0070482 GO:0070887 GO:0070925 GO:0071453 GO:0071456 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097352 GO:0140030 GO:1900407 GO:1901019 GO:1901020 GO:1901339 GO:1901340 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902175 GO:1902531 GO:1902882 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903169 GO:1903170 GO:1903201 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1904062 GO:1904063 GO:1904292 GO:1904294 GO:1905037 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2001233 GO:2001242 GO:2001257 GO:2001258
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
UBA ubiquitin

Protein Analysis

540

Amino Acids

56.52

Weight (kDa)

4.83

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 21 - 89 7.6e-19 Ubiquitin family
Rad60-SLD PF11976 21 - 88 1.3e-06 Ubiquitin-2 like Rad60 SUMO-like
UBQLN1 PF23195 150 - 275 4.6e-51 Ubiquilin-1-like domain
UBQLN1 PF23195 375 - 438 1.7e-07 Ubiquilin-1-like domain
UBA PF00627 497 - 533 1.2e-08 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17190 AT2G17200
fragaria_vesca FvH4_2g16610 FvH4_2g16610
malus_domestica MD05G1134300.v1.1 MD10G1139400.v1.1
prunus_persica Prupe.8G178100_v2.0.a1
pyrus_communis pycom05g13090 pycom10g11840
rosa_chinensis RchiOBHm_Chr6g0280671
rosa_laevigata RLG00000013037
rosa_roxburghii Rroxscaffold_7G00187770
rosa_rugosa Rorug06G0133800 Rorug06G0133800 Rorug06G0133800
rosa_samantha Rh6AG246300 Rh6BG248500 Rh6CG249800 Rh6DG241200
rosa_wichuraiana Rw6G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 896
AccB1I GGYRCC 3 cut(s) 281, 1012, 1397
AccB7I CCANNNNNTGG 2 cut(s) 945, 1022
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 6 cut(s) 51, 104, 306, 309, 807, 1026
AclI AACGTT 1 cut(s) 1486
AclWI GGATC 4 cut(s) 602, 1204, 1349, 1362
AcsI RAATTY 1 cut(s) 428
AfaI GTAC 1 cut(s) 1473
AfiI CCNNNNNNNGG 6 cut(s) 35, 864, 945, 1022, 1394, 1569
AflIII ACRYGT 2 cut(s) 468, 1422
AgeI ACCGGT 1 cut(s) 887
AgsI TTSAA 8 cut(s) 21, 133, 205, 704, 724, 769, 882, 1514
AjnI CCWGG 5 cut(s) 397, 610, 857, 983, 1612
Alw21I GWGCWC 3 cut(s) 77, 397, 1185
Alw26I GTCTC 1 cut(s) 1277
AlwI GGATC 4 cut(s) 602, 1204, 1349, 1362
AlwNI CAGNNNCTG 2 cut(s) 911, 1213
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 1 cut(s) 855
ApoI RAATTY 1 cut(s) 428
AseI ATTAAT 1 cut(s) 63
AsiGI ACCGGT 1 cut(s) 887
Asp700I GAANNNNTTC 2 cut(s) 750, 1424
AspS9I GGNCC 1 cut(s) 84
AsuC2I CCSGG 3 cut(s) 279, 787, 1570
AvaII GGWCC 1 cut(s) 84
AxyI CCTNAGG 1 cut(s) 714
BaeGI GKGCMC 2 cut(s) 853, 1015
BamHI GGATCC 1 cut(s) 1354
BanI GGYRCC 3 cut(s) 281, 1012, 1397
BauI CACGAG 1 cut(s) 360
Bbv12I GWGCWC 3 cut(s) 77, 397, 1185
BccI CCATC 4 cut(s) 857, 998, 1099, 1351
BciT130I CCWGG 5 cut(s) 399, 612, 859, 985, 1614
BclI TGATCA 2 cut(s) 169, 540
BcnI CCSGG 3 cut(s) 279, 787, 1570
BcoDI GTCTC 1 cut(s) 1277
BfaI CTAG 2 cut(s) 632, 1049
BfmI CTRYAG 5 cut(s) 339, 345, 903, 1377, 1584
BfuAI ACCTGC 1 cut(s) 896
Bme1390I CCNGG 8 cut(s) 279, 399, 612, 787, 859, 985, 1570, 1614
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmrFI CCNGG 8 cut(s) 279, 399, 612, 787, 859, 985, 1570, 1614
BmsI GCATC 6 cut(s) 519, 660, 793, 1161, 1233, 1401
BpmI CTGGAG 2 cut(s) 981, 1427
BpuEI CTTGAG 1 cut(s) 1521
BpuMI CCSGG 3 cut(s) 279, 787, 1570
Bsa29I ATCGAT 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 858, 944, 983
BsaWI WCCGGW 4 cut(s) 424, 576, 887, 1477
Bsc4I CCNNNNNNNGG 6 cut(s) 35, 864, 945, 1022, 1394, 1569
Bse118I RCCGGY 1 cut(s) 887
Bse1I ACTGG 4 cut(s) 964, 1372, 1410, 1460
Bse21I CCTNAGG 1 cut(s) 714
Bse3DI GCAATG 3 cut(s) 696, 1474, 1553
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 5 cut(s) 399, 612, 859, 985, 1614
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 858, 944, 983
BseGI GGATG 2 cut(s) 868, 1009
BseLI CCNNNNNNNGG 6 cut(s) 35, 864, 945, 1022, 1394, 1569
BseMI GCAATG 3 cut(s) 696, 1474, 1553
BseMII CTCAG 9 cut(s) 161, 470, 513, 705, 1272, 1340, 1364, 1376, 1511
BseNI ACTGG 4 cut(s) 964, 1372, 1410, 1460
BseSI GKGCMC 2 cut(s) 853, 1015
BseYI CCCAGC 2 cut(s) 794, 998
BsgI GTGCAG 2 cut(s) 461, 1440
BshFI GGCC 1 cut(s) 857
BshNI GGYRCC 3 cut(s) 281, 1012, 1397
BshTI ACCGGT 1 cut(s) 887
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 3 cut(s) 77, 397, 1185
BsiSI CCGG 8 cut(s) 278, 425, 577, 786, 888, 1401, 1478, 1569
BslFI GGGAC 2 cut(s) 315, 880
BslI CCNNNNNNNGG 6 cut(s) 35, 864, 945, 1022, 1394, 1569
BsmAI GTCTC 1 cut(s) 1277
BsmFI GGGAC 2 cut(s) 315, 880
BsmI GAATGC 2 cut(s) 128, 796
BsnI GGCC 1 cut(s) 857
Bsp1286I GDGCHC 5 cut(s) 77, 397, 853, 1015, 1185
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 6 cut(s) 169, 244, 540, 607, 1209, 1354
BspACI CCGC 6 cut(s) 51, 104, 306, 309, 807, 1026
BspANI GGCC 1 cut(s) 857
BspCNI CTCAG 9 cut(s) 160, 469, 514, 706, 1273, 1339, 1363, 1375, 1510
BspDI ATCGAT 1 cut(s) 117
BspEI TCCGGA 1 cut(s) 424
BspHI TCATGA 1 cut(s) 543
BspMAI CTGCAG 4 cut(s) 343, 349, 907, 1588
BspMI ACCTGC 1 cut(s) 896
BspPI GGATC 4 cut(s) 602, 1204, 1349, 1362
BspT107I GGYRCC 3 cut(s) 281, 1012, 1397
BsrDI GCAATG 3 cut(s) 696, 1474, 1553
BsrFI RCCGGY 1 cut(s) 887
BsrI ACTGG 4 cut(s) 964, 1372, 1410, 1460
BssAI RCCGGY 1 cut(s) 887
BssECI CCNNGG 3 cut(s) 858, 944, 983
BssMI GATC 6 cut(s) 169, 244, 540, 607, 1209, 1354
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 944
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 5 cut(s) 399, 612, 859, 985, 1614
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 939
BstAPI GCANNNNNTGC 3 cut(s) 911, 1180, 1297
BstC8I GCNNGC 8 cut(s) 26, 240, 495, 591, 1115, 1302, 1444, 1560
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 868, 1009
BstKTI GATC 6 cut(s) 172, 247, 543, 610, 1212, 1357
BstMAI GTCTC 1 cut(s) 1277
BstMBI GATC 6 cut(s) 169, 244, 540, 607, 1209, 1354
BstNI CCWGG 5 cut(s) 399, 612, 859, 985, 1614
BstNSI RCATGY 4 cut(s) 472, 730, 1117, 1426
BstSCI CCNGG 8 cut(s) 277, 397, 610, 785, 857, 983, 1568, 1612
BstSFI CTRYAG 5 cut(s) 339, 345, 903, 1377, 1584
BstSLI GKGCMC 2 cut(s) 853, 1015
BstX2I RGATCY 2 cut(s) 1209, 1354
BstYI RGATCY 2 cut(s) 1209, 1354
Bsu15I ATCGAT 1 cut(s) 117
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 1 cut(s) 857
BsuTUI ATCGAT 1 cut(s) 117
BtsCI GGATG 2 cut(s) 868, 1009
BtsI GCAGTG 2 cut(s) 336, 1137
BtsIMutI CAGTG 3 cut(s) 336, 678, 1137
BveI ACCTGC 1 cut(s) 896
Cac8I GCNNGC 8 cut(s) 26, 240, 495, 591, 1115, 1302, 1444, 1560
CaiI CAGNNNCTG 2 cut(s) 911, 1213
CciI TCATGA 1 cut(s) 543
Cfr10I RCCGGY 1 cut(s) 887
Cfr13I GGNCC 1 cut(s) 84
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 1 cut(s) 1130
CsiI ACCWGGT 1 cut(s) 397
Csp6I GTAC 1 cut(s) 1472
CspAI ACCGGT 1 cut(s) 887
CviAII CATG 9 cut(s) 259, 469, 544, 658, 727, 1114, 1144, 1423, 1580
CviQI GTAC 1 cut(s) 1472
DpnI GATC 6 cut(s) 171, 246, 542, 609, 1211, 1356
DpnII GATC 6 cut(s) 169, 244, 540, 607, 1209, 1354
Eam1104I CTCTTC 1 cut(s) 939
EarI CTCTTC 1 cut(s) 939
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 944
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 84
Eco81I CCTNAGG 1 cut(s) 714
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 5 cut(s) 397, 610, 857, 983, 1612
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 944
ErhI CCWWGG 1 cut(s) 944
FaeI CATG 9 cut(s) 262, 472, 547, 661, 730, 1117, 1147, 1426, 1583
FaqI GGGAC 2 cut(s) 315, 880
FatI CATG 9 cut(s) 258, 468, 543, 657, 726, 1113, 1143, 1422, 1579
FauI CCCGC 1 cut(s) 313
FbaI TGATCA 2 cut(s) 169, 540
FokI GGATG 2 cut(s) 875, 1016
FspBI CTAG 2 cut(s) 632, 1049
GsaI CCCAGC 2 cut(s) 798, 1002
GsuI CTGGAG 2 cut(s) 981, 1427
HaeIII GGCC 1 cut(s) 857
HapII CCGG 8 cut(s) 278, 425, 577, 786, 888, 1401, 1478, 1569
HgaI GACGC 1 cut(s) 1130
Hin1II CATG 9 cut(s) 262, 472, 547, 661, 730, 1117, 1147, 1426, 1583
HincII GTYRAC 2 cut(s) 990, 1272
HindII GTYRAC 2 cut(s) 990, 1272
HinfI GANTC 7 cut(s) 17, 505, 704, 838, 1135, 1150, 1204
HpaII CCGG 8 cut(s) 278, 425, 577, 786, 888, 1401, 1478, 1569
Hpy166II GTNNAC 3 cut(s) 256, 990, 1272
Hpy188I TCNGA 8 cut(s) 150, 198, 459, 504, 895, 1209, 1329, 1365
Hpy188III TCNNGA 9 cut(s) 425, 544, 755, 1089, 1213, 1253, 1352, 1514, 1538
Hpy8I GTNNAC 3 cut(s) 256, 990, 1272
Hpy99I CGWCG 1 cut(s) 738
HpyAV CCTTC 3 cut(s) 41, 199, 888
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 3 cut(s) 1179, 1264, 1486
HpySE526I ACGT 3 cut(s) 1179, 1264, 1486
Hsp92II CATG 9 cut(s) 262, 472, 547, 661, 730, 1117, 1147, 1426, 1583
Kpn2I TCCGGA 1 cut(s) 424
Ksp22I TGATCA 2 cut(s) 169, 540
Kzo9I GATC 6 cut(s) 169, 244, 540, 607, 1209, 1354
LmnI GCTCC 7 cut(s) 280, 307, 392, 757, 948, 1439, 1616
LweI GCATC 6 cut(s) 519, 660, 793, 1161, 1233, 1401
MabI ACCWGGT 1 cut(s) 397
MaeI CTAG 2 cut(s) 632, 1049
MaeII ACGT 3 cut(s) 1179, 1264, 1486
MaeIII GTNAC 4 cut(s) 355, 563, 1314, 1503
MalI GATC 6 cut(s) 171, 246, 542, 609, 1211, 1356
MboI GATC 6 cut(s) 169, 244, 540, 607, 1209, 1354
MboII GAAGA 2 cut(s) 699, 926
MflI RGATCY 2 cut(s) 1209, 1354
MhlI GDGCHC 5 cut(s) 77, 397, 853, 1015, 1185
MluCI AATT 3 cut(s) 151, 428, 915
MlyI GAGTC 1 cut(s) 514
MmeI TCCRAC 2 cut(s) 176, 1382
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 2 cut(s) 750, 1424
MseI TTAA 2 cut(s) 63, 603
MspA1I CMGCKG 6 cut(s) 167, 299, 344, 350, 809, 1501
MspI CCGG 8 cut(s) 278, 425, 577, 786, 888, 1401, 1478, 1569
MspR9I CCNGG 8 cut(s) 279, 399, 612, 787, 859, 985, 1570, 1614
Mva1269I GAATGC 2 cut(s) 128, 796
MvaI CCWGG 5 cut(s) 399, 612, 859, 985, 1614
NciI CCSGG 3 cut(s) 279, 787, 1570
NdeII GATC 6 cut(s) 169, 244, 540, 607, 1209, 1354
NlaIII CATG 9 cut(s) 262, 472, 547, 661, 730, 1117, 1147, 1426, 1583
NmuCI GTSAC 3 cut(s) 563, 1314, 1503
NspI RCATGY 4 cut(s) 472, 730, 1117, 1426
PaeI GCATGC 1 cut(s) 1117
PagI TCATGA 1 cut(s) 543
PciI ACATGT 2 cut(s) 468, 1422
PctI GAATGC 2 cut(s) 128, 796
PdmI GAANNNNTTC 2 cut(s) 750, 1424
PfeI GAWTC 6 cut(s) 17, 704, 838, 1135, 1150, 1204
PflMI CCANNNNNTGG 2 cut(s) 945, 1022
PfoI TCCNGGA 1 cut(s) 1568
PinAI ACCGGT 1 cut(s) 887
PleI GAGTC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 513
PscI ACATGT 2 cut(s) 468, 1422
PshBI ATTAAT 1 cut(s) 63
Psp1406I AACGTT 1 cut(s) 1486
Psp6I CCWGG 5 cut(s) 397, 610, 857, 983, 1612
PspFI CCCAGC 2 cut(s) 794, 998
PspGI CCWGG 5 cut(s) 397, 610, 857, 983, 1612
PspPI GGNCC 1 cut(s) 84
PstI CTGCAG 4 cut(s) 343, 349, 907, 1588
PstNI CAGNNNCTG 2 cut(s) 911, 1213
PsuI RGATCY 2 cut(s) 1209, 1354
PvuII CAGCTG 5 cut(s) 167, 299, 344, 350, 1501
RsaI GTAC 1 cut(s) 1473
RsaNI GTAC 1 cut(s) 1472
SaqAI TTAA 2 cut(s) 63, 603
Sau3AI GATC 6 cut(s) 169, 244, 540, 607, 1209, 1354
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 514
ScrFI CCNGG 8 cut(s) 279, 399, 612, 787, 859, 985, 1570, 1614
SduI GDGCHC 5 cut(s) 77, 397, 853, 1015, 1185
SexAI ACCWGGT 1 cut(s) 397
SfaNI GCATC 6 cut(s) 519, 660, 793, 1161, 1233, 1401
SfcI CTRYAG 5 cut(s) 339, 345, 903, 1377, 1584
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 1536
SmoI CTYRAG 1 cut(s) 1536
SphI GCATGC 1 cut(s) 1117
Sse9I AATT 3 cut(s) 151, 428, 915
SsiI CCGC 6 cut(s) 51, 104, 306, 309, 807, 1026
SspI AATATT 2 cut(s) 67, 700
SspMI CTAG 2 cut(s) 632, 1049
StyD4I CCNGG 8 cut(s) 277, 397, 610, 785, 857, 983, 1568, 1612
StyI CCWWGG 1 cut(s) 944
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 3 cut(s) 1182, 1267, 1489
TaqI TCGA 2 cut(s) 117, 1336
TaqII GACCGA 1 cut(s) 85
TasI AATT 3 cut(s) 151, 428, 915
TauI GCSGC 3 cut(s) 107, 311, 809
TfiI GAWTC 6 cut(s) 17, 704, 838, 1135, 1150, 1204
Tru1I TTAA 2 cut(s) 63, 603
Tru9I TTAA 2 cut(s) 63, 603
TscAI CASTG 3 cut(s) 343, 685, 1137
TseFI GTSAC 3 cut(s) 563, 1314, 1503
Tsp45I GTSAC 3 cut(s) 563, 1314, 1503
TspDTI ATGAA 6 cut(s) 500, 527, 560, 759, 1217, 1433
TspRI CASTG 3 cut(s) 343, 685, 1137
Van91I CCANNNNNTGG 2 cut(s) 945, 1022
VpaK11BI GGWCC 1 cut(s) 84
VspI ATTAAT 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 1 cut(s) 428
XceI RCATGY 4 cut(s) 472, 730, 1117, 1426
XmnI GAANNNNTTC 2 cut(s) 750, 1424
XspI CTAG 2 cut(s) 632, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.