Rh6AG246300

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0010891
Physical Location & Seq
Forward (+)
43450559 .. 43454905
4347 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG246300.1

Sequence Viewer

Length: 1398 bp
ATGGGGGTTGAGGGCGATTCAAGCGAGCCTAAAGTAGGTGGTGGAGAAGGCGGAGAGCTGATTAATATTCGGTGCTCTAATGGGTCCAAGTTTTCGGTCAGGGCGGCTTTGGATATCGATGTTGGGGCATTCAAGGCGATTTTGGCTCAGAATTGTGATATTCCAGCTGATCAGCAAAGGTTGATTTACAAAGGTCGGATTTTGAAGGACGACCAGACCCTCACAAGTTATGGTTTGCAGGCAGATCATACTGTCCACATGGTTCGTGCCTTTGCTCCTGGTGCCTCAACAACACCGGCTGCTCCCGCCTCTAATGCTACTTCTGCAAGTCCCAACACTGCAGCTGCAGCTGGTGTTACTCGTGGTGTTGGTTCCGAGGGGGTTGAGAATCCCGACCTTGGGGCATCTTTGCTATTTGGGCAGGGTTTGGGTGGTCTTGGTAGTGGTGGGGCCCCTGGCAGTTTATTTGGGAGTGGGCTTCCGGAATTTGAACAAGTGCAGCAGCAACTAACTCAGAACCCGAACATGATGAGGGATATAATGAATACGCCTGCCATTCAGAGTCTTATGAATAACCCTGAGTTGATGCGAGGCTTGATCATGAACAATCCACAAATGCGTGACATCATTGACCGGAACCCAGAGCTTGCACATATACTTAATGATCCTGGTATTCTTAGACAGACACTAGAAGCTGCAAGGAACCCTGAACTCATGCGTGAGATGATGCGAAACACTGACAGGGCAATGAGTAATATTGAATCTTCGCCTGAGGGGTTCAACATGCTGCGACGAATGTATGAAAATGTTCAGGAGCCATTTTTGAACGCTACCACAATGACCGGGAATGCTGGGAATGATGCGGCTGCAAACCCCTTTGCTGCTCTTCTAGGGAATCAGGGTGGGGCACAGGCCAGGGATGGGACTAACAACCCTTCAACCACCGGTTCAGAAACTACTGCAGGTTCTGCTATTCCTAATGCAAACCCTCTTCCCAACCCTTGGAGCAATGCTACTGGAGGAAATCAAACAAACGCACCCAGGTCAACTCCTGCTGGGGATGGGAGGGCACCAAGTATTGGCGGTCTGGGAGGTCTGGGAGGTCTAGGAGGTCTGGGAGGTCTTGGTGGTCTTCCGGGAATGGAACAAATGATGGGTGGCATGCCAGACGCTAATGCAATGAATCAGCTCATGCAGAATCCAGCAATATCACAGATGATGCAAAGCATGCTCTCTAATCCCCAATATATGAATCAGATCCTGAACCTCAATCCACAACTACGCGCCATGGTTGATTTAAACCCTCAACTTAGAGAAATGATGCAAAATCCAGAGCTTCTACGTCAGTTGACAAACCCTGAGACAATGCAGGTATTTTTCTTCAGAAGTTTGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005776 GO:0005783 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006950 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010604 GO:0010646 GO:0010941 GO:0010959 GO:0012505 GO:0016020 GO:0016043 GO:0016234 GO:0016235 GO:0016236 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019941 GO:0022411 GO:0022607 GO:0022898 GO:0023051 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031593 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032434 GO:0032436 GO:0032879 GO:0032984 GO:0032991 GO:0033554 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0034976 GO:0035973 GO:0036293 GO:0036294 GO:0036503 GO:0042176 GO:0042221 GO:0042802 GO:0042981 GO:0043067 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043271 GO:0043632 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051924 GO:0051926 GO:0060255 GO:0061136 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070013 GO:0070482 GO:0070887 GO:0070925 GO:0071453 GO:0071456 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097352 GO:0140030 GO:1900407 GO:1901019 GO:1901020 GO:1901339 GO:1901340 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902175 GO:1902531 GO:1902882 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903169 GO:1903170 GO:1903201 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1904062 GO:1904063 GO:1904292 GO:1904294 GO:1905037 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2001233 GO:2001242 GO:2001257 GO:2001258
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
UBA ubiquitin

Protein Analysis

465

Amino Acids

48.98

Weight (kDa)

4.83

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 21 - 89 6.1e-19 Ubiquitin family
Rad60-SLD PF11976 21 - 88 1.1e-06 Ubiquitin-2 like Rad60 SUMO-like
UBQLN1 PF23195 169 - 294 2.2e-51 Ubiquilin-1-like domain
UBQLN1 PF23195 391 - 456 2.2e-10 Ubiquilin-1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17190 AT2G17200
fragaria_vesca FvH4_2g16610 FvH4_2g16610
malus_domestica MD05G1134300.v1.1 MD10G1139400.v1.1
prunus_persica Prupe.8G178100_v2.0.a1
pyrus_communis pycom05g13090 pycom10g11840
rosa_chinensis RchiOBHm_Chr6g0280671
rosa_laevigata RLG00000013037
rosa_roxburghii Rroxscaffold_7G00187770
rosa_rugosa Rorug06G0133800 Rorug06G0133800 Rorug06G0133800
rosa_samantha Rh6AG246300 Rh6BG248500 Rh6CG249800 Rh6DG241200
rosa_wichuraiana Rw6G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 953, 1360
AccB1I GGYRCC 2 cut(s) 281, 1069
AccB7I CCANNNNNTGG 2 cut(s) 1002, 1079
AccII CGCG 1 cut(s) 1284
AccIII TCCGGA 1 cut(s) 481
AciI CCGC 5 cut(s) 51, 104, 306, 863, 1083
AclWI GGATC 2 cut(s) 659, 1252
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 1366
AfiI CCNNNNNNNGG 6 cut(s) 35, 398, 399, 921, 1002, 1079
AgeI ACCGGT 1 cut(s) 944
AgsI TTSAA 8 cut(s) 21, 133, 205, 491, 761, 781, 826, 939
AjnI CCWGG 5 cut(s) 277, 454, 667, 914, 1040
AluBI AGCT 8 cut(s) 58, 167, 344, 350, 646, 695, 1189, 1336
AluI AGCT 8 cut(s) 58, 167, 344, 350, 646, 695, 1189, 1336
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 1355
AlwI GGATC 2 cut(s) 659, 1252
AlwNI CAGNNNCTG 2 cut(s) 968, 1261
Aor13HI TCCGGA 1 cut(s) 481
AoxI GGCC 2 cut(s) 450, 912
ApaI GGGCCC 1 cut(s) 454
ApoI RAATTY 1 cut(s) 485
AseI ATTAAT 1 cut(s) 63
AsiGI ACCGGT 1 cut(s) 944
Asp700I GAANNNNTTC 1 cut(s) 807
AspLEI GCGC 1 cut(s) 1286
AspS9I GGNCC 3 cut(s) 84, 450, 451
AsuC2I CCSGG 2 cut(s) 844, 1137
AvaII GGWCC 1 cut(s) 84
AxyI CCTNAGG 1 cut(s) 771
BaeGI GKGCMC 3 cut(s) 454, 910, 1072
BanI GGYRCC 2 cut(s) 281, 1069
BanII GRGCYC 1 cut(s) 454
BauI CACGAG 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 1124
Bbv12I GWGCWC 1 cut(s) 77
BccI CCATC 3 cut(s) 914, 1055, 1147
BciT130I CCWGG 5 cut(s) 279, 456, 669, 916, 1042
BclI TGATCA 2 cut(s) 169, 597
BcnI CCSGG 2 cut(s) 844, 1137
BcoDI GTCTC 1 cut(s) 1355
BfaI CTAG 3 cut(s) 689, 890, 1106
BfmI CTRYAG 3 cut(s) 339, 345, 960
BfuAI ACCTGC 2 cut(s) 953, 1360
Bme1390I CCNGG 7 cut(s) 279, 456, 669, 844, 916, 1042, 1137
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 3 cut(s) 84, 450, 451
BmrFI CCNGG 7 cut(s) 279, 456, 669, 844, 916, 1042, 1137
BmsI GCATC 6 cut(s) 413, 576, 717, 850, 1209, 1311
BpiI GAAGAC 1 cut(s) 1124
BpmI CTGGAG 1 cut(s) 1038
BpuMI CCSGG 2 cut(s) 844, 1137
Bsa29I ATCGAT 1 cut(s) 117
BsaJI CCNNGG 7 cut(s) 375, 397, 454, 915, 1001, 1040, 1287
BsaWI WCCGGW 3 cut(s) 481, 633, 944
Bsc4I CCNNNNNNNGG 6 cut(s) 35, 398, 399, 921, 1002, 1079
Bse118I RCCGGY 2 cut(s) 295, 944
Bse1I ACTGG 1 cut(s) 1021
Bse21I CCTNAGG 1 cut(s) 771
Bse3DI GCAATG 3 cut(s) 753, 1015, 1185
BseAI TCCGGA 1 cut(s) 481
BseBI CCWGG 5 cut(s) 279, 456, 669, 916, 1042
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 7 cut(s) 375, 397, 454, 915, 1001, 1040, 1287
BseGI GGATG 2 cut(s) 925, 1066
BseLI CCNNNNNNNGG 6 cut(s) 35, 398, 399, 921, 1002, 1079
BseMI GCAATG 3 cut(s) 753, 1015, 1185
BseMII CTCAG 5 cut(s) 161, 527, 570, 762, 1350
BseNI ACTGG 1 cut(s) 1021
BseSI GKGCMC 3 cut(s) 454, 910, 1072
BseYI CCCAGC 2 cut(s) 851, 1055
BsgI GTGCAG 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 1284
BshFI GGCC 2 cut(s) 452, 914
BshNI GGYRCC 2 cut(s) 281, 1069
BshTI ACCGGT 1 cut(s) 944
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 77
BsiSI CCGG 6 cut(s) 296, 482, 634, 843, 945, 1136
BslFI GGGAC 2 cut(s) 315, 937
BslI CCNNNNNNNGG 6 cut(s) 35, 398, 399, 921, 1002, 1079
BsmAI GTCTC 1 cut(s) 1355
BsmFI GGGAC 2 cut(s) 315, 937
BsmI GAATGC 2 cut(s) 128, 853
BsnI GGCC 2 cut(s) 452, 914
Bsp120I GGGCCC 1 cut(s) 450
Bsp1286I GDGCHC 4 cut(s) 77, 454, 910, 1072
Bsp13I TCCGGA 1 cut(s) 481
Bsp143I GATC 5 cut(s) 169, 244, 597, 664, 1257
Bsp19I CCATGG 1 cut(s) 1287
BspACI CCGC 5 cut(s) 51, 104, 306, 863, 1083
BspANI GGCC 2 cut(s) 452, 914
BspCNI CTCAG 5 cut(s) 160, 526, 571, 763, 1351
BspDI ATCGAT 1 cut(s) 117
BspEI TCCGGA 1 cut(s) 481
BspFNI CGCG 1 cut(s) 1284
BspHI TCATGA 1 cut(s) 600
BspMAI CTGCAG 3 cut(s) 343, 349, 964
BspMI ACCTGC 2 cut(s) 953, 1360
BspPI GGATC 2 cut(s) 659, 1252
BspQI GCTCTTC 1 cut(s) 891
BspT107I GGYRCC 2 cut(s) 281, 1069
BsrDI GCAATG 3 cut(s) 753, 1015, 1185
BsrFI RCCGGY 2 cut(s) 295, 944
BsrI ACTGG 1 cut(s) 1021
BssAI RCCGGY 2 cut(s) 295, 944
BssECI CCNNGG 7 cut(s) 375, 397, 454, 915, 1001, 1040, 1287
BssMI GATC 5 cut(s) 169, 244, 597, 664, 1257
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 3 cut(s) 397, 1001, 1287
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 5 cut(s) 279, 456, 669, 916, 1042
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 2 cut(s) 891, 996
BstAPI GCANNNNNTGC 2 cut(s) 968, 1228
BstC8I GCNNGC 6 cut(s) 26, 240, 552, 648, 1163, 1229
BstDEI CTNAG 7 cut(s) 147, 513, 579, 677, 771, 1310, 1359
BstDSI CCRYGG 1 cut(s) 1287
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 925, 1066
BstFNI CGCG 1 cut(s) 1284
BstHHI GCGC 1 cut(s) 1286
BstKTI GATC 5 cut(s) 172, 247, 600, 667, 1260
BstMAI GTCTC 1 cut(s) 1355
BstMBI GATC 5 cut(s) 169, 244, 597, 664, 1257
BstNI CCWGG 5 cut(s) 279, 456, 669, 916, 1042
BstNSI RCATGY 3 cut(s) 787, 1165, 1231
BstSCI CCNGG 7 cut(s) 277, 454, 667, 842, 914, 1040, 1135
BstSFI CTRYAG 3 cut(s) 339, 345, 960
BstSLI GKGCMC 3 cut(s) 454, 910, 1072
BstUI CGCG 1 cut(s) 1284
BstV2I GAAGAC 1 cut(s) 1124
BstX2I RGATCY 1 cut(s) 1257
BstYI RGATCY 1 cut(s) 1257
Bsu15I ATCGAT 1 cut(s) 117
Bsu36I CCTNAGG 1 cut(s) 771
BsuRI GGCC 2 cut(s) 452, 914
BsuTUI ATCGAT 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 1287
BtsCI GGATG 2 cut(s) 925, 1066
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 336, 735
BveI ACCTGC 2 cut(s) 953, 1360
Cac8I GCNNGC 6 cut(s) 26, 240, 552, 648, 1163, 1229
CaiI CAGNNNCTG 2 cut(s) 968, 1261
CciI TCATGA 1 cut(s) 600
CfoI GCGC 1 cut(s) 1286
Cfr10I RCCGGY 2 cut(s) 295, 944
Cfr13I GGNCC 3 cut(s) 84, 450, 451
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 1 cut(s) 1178
CspAI ACCGGT 1 cut(s) 944
CviAII CATG 9 cut(s) 259, 526, 601, 715, 784, 1162, 1192, 1228, 1288
DdeI CTNAG 7 cut(s) 147, 513, 579, 677, 771, 1310, 1359
DpnI GATC 5 cut(s) 171, 246, 599, 666, 1259
DpnII GATC 5 cut(s) 169, 244, 597, 664, 1257
DraI TTTAAA 1 cut(s) 1299
Eam1104I CTCTTC 2 cut(s) 891, 996
EarI CTCTTC 2 cut(s) 891, 996
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 3 cut(s) 397, 1001, 1287
Eco24I GRGCYC 1 cut(s) 454
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 1366
Eco81I CCTNAGG 1 cut(s) 771
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoO109I RGGNCCY 2 cut(s) 450, 451
EcoRII CCWGG 5 cut(s) 277, 454, 667, 914, 1040
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 3 cut(s) 397, 1001, 1287
EcoT38I GRGCYC 1 cut(s) 454
ErhI CCWWGG 3 cut(s) 397, 1001, 1287
FaeI CATG 9 cut(s) 262, 529, 604, 718, 787, 1165, 1195, 1231, 1291
FaqI GGGAC 2 cut(s) 315, 937
FatI CATG 9 cut(s) 258, 525, 600, 714, 783, 1161, 1191, 1227, 1287
FauI CCCGC 1 cut(s) 313
FbaI TGATCA 2 cut(s) 169, 597
FokI GGATG 2 cut(s) 932, 1073
FriOI GRGCYC 1 cut(s) 454
FspBI CTAG 3 cut(s) 689, 890, 1106
GlaI GCGC 1 cut(s) 1285
GsaI CCCAGC 2 cut(s) 855, 1059
GsuI CTGGAG 1 cut(s) 1038
HaeIII GGCC 2 cut(s) 452, 914
HapII CCGG 6 cut(s) 296, 482, 634, 843, 945, 1136
HgaI GACGC 1 cut(s) 1178
HhaI GCGC 1 cut(s) 1286
Hin1II CATG 9 cut(s) 262, 529, 604, 718, 787, 1165, 1195, 1231, 1291
Hin6I GCGC 1 cut(s) 1284
HinP1I GCGC 1 cut(s) 1284
HincII GTYRAC 2 cut(s) 1047, 1350
HindII GTYRAC 2 cut(s) 1047, 1350
HinfI GANTC 8 cut(s) 17, 388, 562, 761, 895, 1183, 1198, 1252
HpaII CCGG 6 cut(s) 296, 482, 634, 843, 945, 1136
Hpy166II GTNNAC 3 cut(s) 256, 1047, 1350
Hpy188I TCNGA 8 cut(s) 150, 198, 376, 516, 561, 952, 1257, 1385
Hpy188III TCNNGA 6 cut(s) 392, 482, 601, 812, 1261, 1331
Hpy8I GTNNAC 3 cut(s) 256, 1047, 1350
Hpy99I CGWCG 1 cut(s) 795
HpyAV CCTTC 3 cut(s) 41, 199, 945
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 1342
HpyF3I CTNAG 7 cut(s) 147, 513, 579, 677, 771, 1310, 1359
HpySE526I ACGT 1 cut(s) 1342
Hsp92II CATG 9 cut(s) 262, 529, 604, 718, 787, 1165, 1195, 1231, 1291
HspAI GCGC 1 cut(s) 1284
Kpn2I TCCGGA 1 cut(s) 481
Ksp22I TGATCA 2 cut(s) 169, 597
Kzo9I GATC 5 cut(s) 169, 244, 597, 664, 1257
LguI GCTCTTC 1 cut(s) 891
LmnI GCTCC 4 cut(s) 280, 307, 814, 1005
LweI GCATC 6 cut(s) 413, 576, 717, 850, 1209, 1311
MaeI CTAG 3 cut(s) 689, 890, 1106
MaeII ACGT 1 cut(s) 1342
MaeIII GTNAC 2 cut(s) 355, 620
MalI GATC 5 cut(s) 171, 246, 599, 666, 1259
MboI GATC 5 cut(s) 169, 244, 597, 664, 1257
MboII GAAGA 5 cut(s) 756, 878, 983, 1124, 1372
MflI RGATCY 1 cut(s) 1257
MhlI GDGCHC 4 cut(s) 77, 454, 910, 1072
MluCI AATT 2 cut(s) 151, 485
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 1 cut(s) 176
MroI TCCGGA 1 cut(s) 481
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 3 cut(s) 63, 660, 1298
MspA1I CMGCKG 3 cut(s) 167, 344, 350
MspI CCGG 6 cut(s) 296, 482, 634, 843, 945, 1136
MspR9I CCNGG 7 cut(s) 279, 456, 669, 844, 916, 1042, 1137
Mva1269I GAATGC 2 cut(s) 128, 853
MvaI CCWGG 5 cut(s) 279, 456, 669, 916, 1042
MvnI CGCG 1 cut(s) 1284
NciI CCSGG 2 cut(s) 844, 1137
NcoI CCATGG 1 cut(s) 1287
NdeII GATC 5 cut(s) 169, 244, 597, 664, 1257
NlaIII CATG 9 cut(s) 262, 529, 604, 718, 787, 1165, 1195, 1231, 1291
NmuCI GTSAC 1 cut(s) 620
NspI RCATGY 3 cut(s) 787, 1165, 1231
PaeI GCATGC 2 cut(s) 1165, 1231
PagI TCATGA 1 cut(s) 600
PciSI GCTCTTC 1 cut(s) 891
PctI GAATGC 2 cut(s) 128, 853
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 7 cut(s) 17, 388, 761, 895, 1183, 1198, 1252
PflMI CCANNNNNTGG 2 cut(s) 1002, 1079
PfoI TCCNGGA 1 cut(s) 1135
PinAI ACCGGT 1 cut(s) 944
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
PshBI ATTAAT 1 cut(s) 63
Psp6I CCWGG 5 cut(s) 277, 454, 667, 914, 1040
PspFI CCCAGC 2 cut(s) 851, 1055
PspGI CCWGG 5 cut(s) 277, 454, 667, 914, 1040
PspOMI GGGCCC 1 cut(s) 450
PspPI GGNCC 3 cut(s) 84, 450, 451
PstI CTGCAG 3 cut(s) 343, 349, 964
PstNI CAGNNNCTG 2 cut(s) 968, 1261
PsuI RGATCY 1 cut(s) 1257
PvuII CAGCTG 3 cut(s) 167, 344, 350
SapI GCTCTTC 1 cut(s) 891
SaqAI TTAA 3 cut(s) 63, 660, 1298
Sau3AI GATC 5 cut(s) 169, 244, 597, 664, 1257
Sau96I GGNCC 3 cut(s) 84, 450, 451
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 7 cut(s) 279, 456, 669, 844, 916, 1042, 1137
SduI GDGCHC 4 cut(s) 77, 454, 910, 1072
SfaNI GCATC 6 cut(s) 413, 576, 717, 850, 1209, 1311
SfcI CTRYAG 3 cut(s) 339, 345, 960
SinI GGWCC 1 cut(s) 84
SphI GCATGC 2 cut(s) 1165, 1231
Sse9I AATT 2 cut(s) 151, 485
SsiI CCGC 5 cut(s) 51, 104, 306, 863, 1083
SspI AATATT 2 cut(s) 67, 757
SspMI CTAG 3 cut(s) 689, 890, 1106
StyD4I CCNGG 7 cut(s) 277, 454, 667, 842, 914, 1040, 1135
StyI CCWWGG 3 cut(s) 397, 1001, 1287
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 1 cut(s) 1345
TaqI TCGA 1 cut(s) 117
TaqII GACCGA 1 cut(s) 85
TasI AATT 2 cut(s) 151, 485
TauI GCSGC 2 cut(s) 107, 866
TfiI GAWTC 7 cut(s) 17, 388, 761, 895, 1183, 1198, 1252
Tru1I TTAA 3 cut(s) 63, 660, 1298
Tru9I TTAA 3 cut(s) 63, 660, 1298
TscAI CASTG 2 cut(s) 343, 742
TseFI GTSAC 1 cut(s) 620
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 6 cut(s) 557, 584, 617, 816, 1196, 1265
TspRI CASTG 2 cut(s) 343, 742
Van91I CCANNNNNTGG 2 cut(s) 1002, 1079
VpaK11BI GGWCC 1 cut(s) 84
VspI ATTAAT 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 1 cut(s) 485
XceI RCATGY 3 cut(s) 787, 1165, 1231
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 3 cut(s) 689, 890, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.