MD10G1139400.v1.1

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0010891
Physical Location & Seq
Forward (+)
22420206 .. 22424282
4077 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1139400.v1.1.491

Sequence Viewer

Length: 1641 bp
ATGGGTGGCGAGGGCGATTCGAGCGAGCCTAAAGTCGGTGGCGAAGGAGAAGGAGGAGAGCAGATTAACATTCGATGCTCGAATGGCTCCAAGTTTTCGGTGAGGGCGAGCCTGGACTCGACTGTTGGGGCATTCAAGGAAGTTTTGGCTCAGAATTGCGATACTCCAGCTGATCAGCAGAGGTTAATTTACAAAGGTCGTATTTTGAAGGACGACCAGACCCTCACTAGTTATGGTCTGCAGGCTGATCATACTGTTCACATGGTCCGTGCCTTTGCTGCACCTGCGTCAACCCCCGCTCCCCCTGCTGCTACTGCTAGTCCTACCACTGCTCCAGGTGTTACACGCGGTGTTGGTAGTGAGGGGCTTCAGAGTCCTGACCTTGGGGCATCTTTGTTATTTGGGCAGGGTTTAAACCCACTTGGTGGCGGTGGTGGAGGACAGGGTTTATTTGGAGCTGGGCTTCCGGAATTTGAACAAGTGCAGCAACAACTGACTCAGAACCCGAACATGATGAGGGACATAATGAACATGCCTGCCATTCAGAGTTTGATGAATAACCCTGATTTGATGCGTGGCTTGATCATGAACAATCCGCAAATGCGTGATATCATAGACCGGAACCCAGAGCTTGCACATATACTTAATGATCCTGGCATTCTCCGGCAGACATTGGAAGCCGCAAGGAACCCTGAACTCATGCGTGAGATGATGCGAAACACTGACAGAGCAATGAGTAACATTGAATCTTCCCCTGAGGGATTCAACATGCTGAGGCGGATGTATGAAAACGTTCAGGAGCCATTTTTGAATGCTACAACCGGAAATGCTGGAAATGATTTGGGTTCAAATCCTTTTTCTGCTCTTTTGGGAAACCAGGGTGGGGCACAGGCCAGGGATGGGTCTAACAATCCTTCAACCACTGGTTCAGAAACAGCTGCTGGTTCTGCTGCTCCTAATGCAAATCCACTTCCTAACCCTTGGGGCATTGCTGGTGGAGGAAATCAGCCAAATACTACGAGGACAAATCCTGTTGGGGATGGAAGGGCCGCCAGTATTGCTGGCCTGGGAGGGCTTGGTCTCCCCGGAATGGAACAGATGCTTGGTGGCATGACAGATGCTAATGCAATGAATCAGCTTTTGCAGAATCCAGCCATATCACAGATGATGCAAAGCATGCTTTCCAATCCCCAGTACATGAATCAGATTCTGAGCCTCAATCCACAACTACGCGAAATGGTTGATTTAAATCCTCAACTTAGGGAAATGATGCAAAATCCAGAGCTACTAAGGCAGTTAATGAACCCTGAAACAATGCAGCAAATGCTCGCGTTACAGCAGTCACTATTTTCTCCCAATCGACAACAACCAACTCAGGATCCAACTCTGACCAGTGGTGCTACAGGTGCCCCTAATAATGCCGGTTTGGAGATGCTGATGAACATGTTTGGAGGTCTTGGAGCCGGCGGCTTGGCCGCTGCAAACCCTAACGTACCACCGGAAGAACTGTATGAAAATCAGCTGAGGCAGCTACGAGAAATGGGTTTCTTCGATACCCAAGAGAATATCAGGGCATTGCAAGCCACTTCTGGGAATGTCCATGCTGCGGTAGAGCGACTTTTAGGGAATCCTGGGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005776 GO:0005783 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006950 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010604 GO:0010646 GO:0010941 GO:0010959 GO:0012505 GO:0016020 GO:0016043 GO:0016234 GO:0016235 GO:0016236 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019941 GO:0022411 GO:0022607 GO:0022898 GO:0023051 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031593 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032434 GO:0032436 GO:0032879 GO:0032984 GO:0032991 GO:0033554 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0034976 GO:0035973 GO:0036293 GO:0036294 GO:0036503 GO:0042176 GO:0042221 GO:0042802 GO:0042981 GO:0043067 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043271 GO:0043632 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051924 GO:0051926 GO:0060255 GO:0061136 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070013 GO:0070482 GO:0070887 GO:0070925 GO:0071453 GO:0071456 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097352 GO:0140030 GO:1900407 GO:1901019 GO:1901020 GO:1901339 GO:1901340 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902175 GO:1902531 GO:1902882 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903169 GO:1903170 GO:1903201 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1904062 GO:1904063 GO:1904292 GO:1904294 GO:1905037 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2001233 GO:2001242 GO:2001257 GO:2001258
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
UBA ubiquitin

Protein Analysis

547

Amino Acids

57.9

Weight (kDa)

4.72

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 21 - 89 3.5e-08 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 22 - 90 4.2e-21 Ubiquitin family
UBQLN1 PF23195 164 - 286 6.9e-52 Ubiquilin-1-like domain
UBQLN1 PF23195 372 - 451 6.7e-12 Ubiquilin-1-like domain
UBA PF00627 504 - 540 1.6e-07 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17190 AT2G17200
fragaria_vesca FvH4_2g16610 FvH4_2g16610
malus_domestica MD05G1134300.v1.1 MD10G1139400.v1.1
prunus_persica Prupe.8G178100_v2.0.a1
pyrus_communis pycom05g13090 pycom10g11840
rosa_chinensis RchiOBHm_Chr6g0280671
rosa_laevigata RLG00000013037
rosa_roxburghii Rroxscaffold_7G00187770
rosa_rugosa Rorug06G0133800 Rorug06G0133800 Rorug06G0133800
rosa_samantha Rh6AG246300 Rh6BG248500 Rh6CG249800 Rh6DG241200
rosa_wichuraiana Rw6G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 292
Acc36I ACCTGC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 1406
AccB7I CCANNNNNTGG 1 cut(s) 425
AccBSI CCGCTC 1 cut(s) 299
AccII CGCG 3 cut(s) 348, 1233, 1331
AccIII TCCGGA 1 cut(s) 466
AclI AACGTT 1 cut(s) 792
AclWI GGATC 3 cut(s) 644, 1373, 1386
AcoI YGGCCR 1 cut(s) 1473
AcsI RAATTY 1 cut(s) 470
AcuI CTGAAG 1 cut(s) 353
AdeI CACNNNGTG 2 cut(s) 350, 425
AfaI GTAC 2 cut(s) 1196, 1494
AfiI CCNNNNNNNGG 8 cut(s) 35, 383, 425, 883, 900, 1090, 1590, 1606
AflIII ACRYGT 1 cut(s) 1443
AgsI TTSAA 8 cut(s) 136, 208, 476, 746, 766, 811, 849, 918
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 7 cut(s) 111, 334, 652, 876, 893, 1065, 1630
AjuI GAANNNNNNNTTGG 2 cut(s) 1086, 1118
AluBI AGCT 8 cut(s) 170, 458, 631, 938, 1138, 1285, 1522, 1531
AluI AGCT 8 cut(s) 170, 458, 631, 938, 1138, 1285, 1522, 1531
Alw26I GTCTC 1 cut(s) 1085
AlwI GGATC 3 cut(s) 644, 1373, 1386
AlwNI CAGNNNCTG 2 cut(s) 941, 1210
Aor13HI TCCGGA 1 cut(s) 466
AoxI GGCC 4 cut(s) 891, 1047, 1063, 1473
ApeKI GCWGC 9 cut(s) 278, 308, 484, 938, 950, 1318, 1478, 1528, 1604
ApoI RAATTY 1 cut(s) 470
Asp700I GAANNNNTTC 1 cut(s) 792
AspS9I GGNCC 2 cut(s) 265, 1047
AsuC2I CCSGG 1 cut(s) 1086
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 1 cut(s) 265
AxyI CCTNAGG 1 cut(s) 756
BaeGI GKGCMC 2 cut(s) 889, 1411
BamHI GGATCC 1 cut(s) 1378
BanI GGYRCC 1 cut(s) 1406
BbvCI CCTCAGC 2 cut(s) 773, 1523
BbvI GCAGC 9 cut(s) 265, 295, 496, 925, 937, 1330, 1465, 1540, 1591
BccI CCATC 2 cut(s) 893, 1034
BciT130I CCWGG 7 cut(s) 113, 336, 654, 878, 895, 1067, 1632
BclI TGATCA 3 cut(s) 172, 247, 582
BcnI CCSGG 1 cut(s) 1086
BcoDI GTCTC 1 cut(s) 1085
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 2 cut(s) 228, 318
BfmI CTRYAG 2 cut(s) 239, 1401
BfuAI ACCTGC 1 cut(s) 292
Bme1390I CCNGG 8 cut(s) 113, 336, 654, 878, 895, 1067, 1086, 1632
Bme18I GGWCC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 265, 1047
BmiI GGNNCC 7 cut(s) 88, 623, 689, 801, 1380, 1408, 1462
BmrFI CCNGG 8 cut(s) 113, 336, 654, 878, 895, 1067, 1086, 1632
BmrI ACTGGG 1 cut(s) 1186
BmsI GCATC 9 cut(s) 65, 398, 561, 702, 1089, 1108, 1158, 1260, 1422
BmuI ACTGGG 1 cut(s) 1186
BpmI CTGGAG 2 cut(s) 150, 318
Bpu10I CCTNAGC 2 cut(s) 773, 1523
BpuMI CCSGG 1 cut(s) 1086
BsaBI GATNNNNATC 1 cut(s) 1248
BsaI GGTCTC 1 cut(s) 1085
BsaJI CCNNGG 7 cut(s) 382, 877, 894, 980, 1066, 1084, 1631
BsaWI WCCGGW 4 cut(s) 466, 618, 821, 1498
BsaXI ACNNNNNCTCC 4 cut(s) 283, 313, 316, 346
Bsc4I CCNNNNNNNGG 8 cut(s) 35, 383, 425, 883, 900, 1090, 1590, 1606
Bse118I RCCGGY 2 cut(s) 1421, 1463
Bse1I ACTGG 4 cut(s) 928, 1053, 1192, 1392
Bse21I CCTNAGG 1 cut(s) 756
Bse3DI GCAATG 4 cut(s) 738, 987, 1134, 1574
Bse8I GATNNNNATC 1 cut(s) 1248
BseAI TCCGGA 1 cut(s) 466
BseBI CCWGG 7 cut(s) 113, 336, 654, 878, 895, 1067, 1632
BseDI CCNNGG 7 cut(s) 382, 877, 894, 980, 1066, 1084, 1631
BseGI GGATG 3 cut(s) 786, 904, 1045
BseJI GATNNNNATC 1 cut(s) 1248
BseLI CCNNNNNNNGG 8 cut(s) 35, 383, 425, 883, 900, 1090, 1590, 1606
BseMI GCAATG 4 cut(s) 738, 987, 1134, 1574
BseMII CTCAG 7 cut(s) 164, 512, 747, 764, 1202, 1388, 1514
BseNI ACTGG 4 cut(s) 928, 1053, 1192, 1392
BseRI GAGGAG 1 cut(s) 69
BseSI GKGCMC 2 cut(s) 889, 1411
BseXI GCAGC 9 cut(s) 265, 295, 496, 925, 937, 1330, 1465, 1540, 1591
BseYI CCCAGC 1 cut(s) 458
BsgI GTGCAG 2 cut(s) 264, 503
Bsh1236I CGCG 3 cut(s) 348, 1233, 1331
BshFI GGCC 4 cut(s) 893, 1049, 1065, 1475
BshNI GGYRCC 1 cut(s) 1406
BsiSI CCGG 8 cut(s) 467, 619, 664, 822, 1086, 1422, 1464, 1499
BslFI GGGAC 1 cut(s) 533
BslI CCNNNNNNNGG 8 cut(s) 35, 383, 425, 883, 900, 1090, 1590, 1606
BsmAI GTCTC 1 cut(s) 1085
BsmFI GGGAC 1 cut(s) 533
BsmI GAATGC 3 cut(s) 131, 657, 817
BsnI GGCC 4 cut(s) 893, 1049, 1065, 1475
Bso31I GGTCTC 1 cut(s) 1085
Bsp1286I GDGCHC 2 cut(s) 889, 1411
Bsp13I TCCGGA 1 cut(s) 466
Bsp143I GATC 5 cut(s) 172, 247, 582, 649, 1378
BspANI GGCC 4 cut(s) 893, 1049, 1065, 1475
BspCNI CTCAG 7 cut(s) 163, 511, 748, 765, 1203, 1387, 1515
BspEI TCCGGA 1 cut(s) 466
BspFNI CGCG 3 cut(s) 348, 1233, 1331
BspHI TCATGA 1 cut(s) 585
BspLI GGNNCC 7 cut(s) 88, 623, 689, 801, 1380, 1408, 1462
BspMAI CTGCAG 1 cut(s) 243
BspMI ACCTGC 1 cut(s) 292
BspPI GGATC 3 cut(s) 644, 1373, 1386
BspT107I GGYRCC 1 cut(s) 1406
BspTNI GGTCTC 1 cut(s) 1085
BsrBI CCGCTC 1 cut(s) 299
BsrDI GCAATG 4 cut(s) 738, 987, 1134, 1574
BsrFI RCCGGY 2 cut(s) 1421, 1463
BsrI ACTGG 4 cut(s) 928, 1053, 1192, 1392
BssAI RCCGGY 2 cut(s) 1421, 1463
BssECI CCNNGG 7 cut(s) 382, 877, 894, 980, 1066, 1084, 1631
BssMI GATC 5 cut(s) 172, 247, 582, 649, 1378
BssT1I CCWWGG 2 cut(s) 382, 980
Bst2UI CCWGG 7 cut(s) 113, 336, 654, 878, 895, 1067, 1632
Bst4CI ACNGT 3 cut(s) 124, 256, 1509
BstAPI GCANNNNNTGC 2 cut(s) 1177, 1324
BstDEI CTNAG 9 cut(s) 150, 498, 756, 773, 1211, 1259, 1289, 1374, 1523
BstF5I GGATG 3 cut(s) 786, 904, 1045
BstFNI CGCG 3 cut(s) 348, 1233, 1331
BstKTI GATC 5 cut(s) 175, 250, 585, 652, 1381
BstMAI GTCTC 1 cut(s) 1085
BstMBI GATC 5 cut(s) 172, 247, 582, 649, 1378
BstNI CCWGG 7 cut(s) 113, 336, 654, 878, 895, 1067, 1632
BstNSI RCATGY 4 cut(s) 535, 772, 1180, 1447
BstSCI CCNGG 8 cut(s) 111, 334, 652, 876, 893, 1065, 1084, 1630
BstSFI CTRYAG 2 cut(s) 239, 1401
BstSLI GKGCMC 2 cut(s) 889, 1411
BstUI CGCG 3 cut(s) 348, 1233, 1331
BstV1I GCAGC 9 cut(s) 265, 295, 496, 925, 937, 1330, 1465, 1540, 1591
BstX2I RGATCY 1 cut(s) 1378
BstYI RGATCY 1 cut(s) 1378
Bsu36I CCTNAGG 1 cut(s) 756
BsuRI GGCC 4 cut(s) 893, 1049, 1065, 1475
BtsCI GGATG 3 cut(s) 786, 904, 1045
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 4 cut(s) 327, 720, 921, 1399
BveI ACCTGC 1 cut(s) 292
CaiI CAGNNNCTG 2 cut(s) 941, 1210
CciI TCATGA 1 cut(s) 585
Cfr10I RCCGGY 2 cut(s) 1421, 1463
Cfr13I GGNCC 2 cut(s) 265, 1047
CseI GACGC 1 cut(s) 276
Csp6I GTAC 2 cut(s) 1195, 1493
CviQI GTAC 2 cut(s) 1195, 1493
DdeI CTNAG 9 cut(s) 150, 498, 756, 773, 1211, 1259, 1289, 1374, 1523
DpnI GATC 5 cut(s) 174, 249, 584, 651, 1380
DpnII GATC 5 cut(s) 172, 247, 582, 649, 1378
DraI TTTAAA 2 cut(s) 414, 1248
DraIII CACNNNGTG 2 cut(s) 350, 425
EaeI YGGCCR 1 cut(s) 1473
EciI GGCGGA 1 cut(s) 793
Eco130I CCWWGG 2 cut(s) 382, 980
Eco31I GGTCTC 1 cut(s) 1085
Eco32I GATATC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 353
Eco81I CCTNAGG 1 cut(s) 756
EcoRII CCWGG 7 cut(s) 111, 334, 652, 876, 893, 1065, 1630
EcoRV GATATC 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 382, 980
ErhI CCWWGG 2 cut(s) 382, 980
FaqI GGGAC 1 cut(s) 533
FauI CCCGC 1 cut(s) 304
FbaI TGATCA 3 cut(s) 172, 247, 582
FokI GGATG 3 cut(s) 793, 911, 1052
FspBI CTAG 2 cut(s) 228, 318
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 2 cut(s) 150, 318
HaeIII GGCC 4 cut(s) 893, 1049, 1065, 1475
HapII CCGG 8 cut(s) 467, 619, 664, 822, 1086, 1422, 1464, 1499
HgaI GACGC 1 cut(s) 276
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HpaII CCGG 8 cut(s) 467, 619, 664, 822, 1086, 1422, 1464, 1499
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 259, 291
Hpy188I TCNGA 8 cut(s) 153, 372, 501, 546, 931, 1206, 1212, 1389
Hpy188III TCNNGA 6 cut(s) 377, 467, 586, 797, 1280, 1376
Hpy8I GTNNAC 2 cut(s) 259, 291
HpyAV CCTTC 5 cut(s) 38, 44, 202, 924, 1038
HpyCH4III ACNGT 3 cut(s) 124, 256, 1509
HpyCH4IV ACGT 2 cut(s) 792, 1491
HpyF3I CTNAG 9 cut(s) 150, 498, 756, 773, 1211, 1259, 1289, 1374, 1523
HpySE526I ACGT 2 cut(s) 792, 1491
Kpn2I TCCGGA 1 cut(s) 466
KroI GCCGGC 1 cut(s) 1463
KroNI GCCGGC 1 cut(s) 1465
Ksp22I TGATCA 3 cut(s) 172, 247, 582
Kzo9I GATC 5 cut(s) 172, 247, 582, 649, 1378
LmnI GCTCC 7 cut(s) 92, 304, 337, 455, 799, 958, 1460
Lsp1109I GCAGC 9 cut(s) 265, 295, 496, 925, 937, 1330, 1465, 1540, 1591
LweI GCATC 9 cut(s) 65, 398, 561, 702, 1089, 1108, 1158, 1260, 1422
MaeI CTAG 2 cut(s) 228, 318
MaeII ACGT 2 cut(s) 792, 1491
MaeIII GTNAC 4 cut(s) 340, 737, 1332, 1341
MalI GATC 5 cut(s) 174, 249, 584, 651, 1380
MbiI CCGCTC 1 cut(s) 299
MboI GATC 5 cut(s) 172, 247, 582, 649, 1378
MboII GAAGA 3 cut(s) 741, 1514, 1540
MflI RGATCY 1 cut(s) 1378
MhlI GDGCHC 2 cut(s) 889, 1411
MluCI AATT 3 cut(s) 154, 186, 470
MlyI GAGTC 3 cut(s) 110, 382, 490
MmeI TCCRAC 1 cut(s) 1406
MroI TCCGGA 1 cut(s) 466
MroNI GCCGGC 1 cut(s) 1463
MroXI GAANNNNTTC 1 cut(s) 792
MseI TTAA 6 cut(s) 66, 185, 413, 645, 1247, 1298
MspA1I CMGCKG 4 cut(s) 170, 938, 1478, 1522
MspI CCGG 8 cut(s) 467, 619, 664, 822, 1086, 1422, 1464, 1499
MspR9I CCNGG 8 cut(s) 113, 336, 654, 878, 895, 1067, 1086, 1632
MssI GTTTAAAC 1 cut(s) 414
Mva1269I GAATGC 3 cut(s) 131, 657, 817
MvaI CCWGG 7 cut(s) 113, 336, 654, 878, 895, 1067, 1632
MvnI CGCG 3 cut(s) 348, 1233, 1331
NaeI GCCGGC 1 cut(s) 1465
NciI CCSGG 1 cut(s) 1086
NdeII GATC 5 cut(s) 172, 247, 582, 649, 1378
NgoMIV GCCGGC 1 cut(s) 1463
NlaIV GGNNCC 7 cut(s) 88, 623, 689, 801, 1380, 1408, 1462
NmuCI GTSAC 1 cut(s) 1341
NspI RCATGY 4 cut(s) 535, 772, 1180, 1447
PaeI GCATGC 1 cut(s) 1180
PagI TCATGA 1 cut(s) 585
PaqCI CACCTGC 1 cut(s) 292
PciI ACATGT 1 cut(s) 1443
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PctI GAATGC 3 cut(s) 131, 657, 817
PdiI GCCGGC 1 cut(s) 1465
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 8 cut(s) 17, 746, 762, 1132, 1147, 1201, 1207, 1627
PflMI CCANNNNNTGG 1 cut(s) 425
PleI GAGTC 3 cut(s) 110, 381, 490
PmeI GTTTAAAC 1 cut(s) 414
PpsI GAGTC 3 cut(s) 110, 381, 490
PscI ACATGT 1 cut(s) 1443
Psp1406I AACGTT 1 cut(s) 792
Psp6I CCWGG 7 cut(s) 111, 334, 652, 876, 893, 1065, 1630
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 7 cut(s) 111, 334, 652, 876, 893, 1065, 1630
PspN4I GGNNCC 7 cut(s) 88, 623, 689, 801, 1380, 1408, 1462
PspPI GGNCC 2 cut(s) 265, 1047
PstI CTGCAG 1 cut(s) 243
PstNI CAGNNNCTG 2 cut(s) 941, 1210
PsuI RGATCY 1 cut(s) 1378
PvuII CAGCTG 3 cut(s) 170, 938, 1522
RsaI GTAC 2 cut(s) 1196, 1494
RsaNI GTAC 2 cut(s) 1195, 1493
SaqAI TTAA 6 cut(s) 66, 185, 413, 645, 1247, 1298
Sau3AI GATC 5 cut(s) 172, 247, 582, 649, 1378
Sau96I GGNCC 2 cut(s) 265, 1047
SchI GAGTC 3 cut(s) 110, 382, 490
ScrFI CCNGG 8 cut(s) 113, 336, 654, 878, 895, 1067, 1086, 1632
SduI GDGCHC 2 cut(s) 889, 1411
SfaNI GCATC 9 cut(s) 65, 398, 561, 702, 1089, 1108, 1158, 1260, 1422
SfcI CTRYAG 2 cut(s) 239, 1401
SinI GGWCC 1 cut(s) 265
SmiI ATTTAAAT 1 cut(s) 1248
SpeI ACTAGT 1 cut(s) 227
SphI GCATGC 1 cut(s) 1180
Sse9I AATT 3 cut(s) 154, 186, 470
SspMI CTAG 2 cut(s) 228, 318
StyD4I CCNGG 8 cut(s) 111, 334, 652, 876, 893, 1065, 1084, 1630
StyI CCWWGG 2 cut(s) 382, 980
SwaI ATTTAAAT 1 cut(s) 1248
TaaI ACNGT 3 cut(s) 124, 256, 1509
TaiI ACGT 2 cut(s) 795, 1494
TaqI TCGA 6 cut(s) 20, 73, 80, 119, 1360, 1551
TasI AATT 3 cut(s) 154, 186, 470
TatI WGTACW 1 cut(s) 1194
TauI GCSGC 4 cut(s) 683, 1052, 1470, 1478
TfiI GAWTC 8 cut(s) 17, 746, 762, 1132, 1147, 1201, 1207, 1627
Tru1I TTAA 6 cut(s) 66, 185, 413, 645, 1247, 1298
Tru9I TTAA 6 cut(s) 66, 185, 413, 645, 1247, 1298
TscAI CASTG 4 cut(s) 334, 727, 928, 1399
TseFI GTSAC 1 cut(s) 1341
TseI GCWGC 9 cut(s) 278, 308, 484, 938, 950, 1318, 1478, 1528, 1604
Tsp45I GTSAC 1 cut(s) 1341
TspDTI ATGAA 9 cut(s) 542, 569, 602, 801, 1145, 1214, 1316, 1454, 1527
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 4 cut(s) 334, 727, 928, 1399
Van91I CCANNNNNTGG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 1 cut(s) 470
XceI RCATGY 4 cut(s) 535, 772, 1180, 1447
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 2 cut(s) 228, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.