MD05G1134300.v1.1

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0010891
Physical Location & Seq
Forward (+)
26280281 .. 26284321
4041 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1134300.v1.1.491

Sequence Viewer

Length: 1650 bp
ATGGGTGGGGAGGGCGATTCCAGCGAGCCTAAAGTCAGTGGCGAAGGAGGAGAAGGAGGAGAGCAGATTAACATTCGATGCTCGAATGGTTCCAAGTTTTCGGTGAGGGCGAGCCTGGACTCGACTGTTGGGGCATTCAAGGAAGTTTTGTCTCAGAATTGCGATATTCCAGCTGATCAGCAGAGGTTGATTTACAAAGGTCGTATTTTGAAGGACGACCAGACCCTCACTAGTTATGGTCTGCAGGCAGATCATACTGTTCACATGGTCCGTGCCTTTGCTGCACCTGCATCAACCCCCGCTCCTCCTGCTGCTAATGCTACTTCTGCTAGTCCTACAACTGCTCCAGGTGTTACTCGCGGTGTTGGTTCCACTGAGCGTGAGGGGCTTCAGACTCCTGACCTTGGGGCATCTTTGTTGTTTGGGCAGGGTTTAAACCCACTCGGTGGTGGTGGAGGACAGGGGTTATTTGGAGCTGGTCTTCCGGAATTTGAACAAGTGCAGCAGCAACTGACTCAGAACCCGAACATGATGAGGGACATAATGAACATGCCTGCCATTCAGAGTTTGATGAATAACCCTGATTTGATGCGTGGCTTGATTATGAACAATCCGCAAATGCGTGATATCATTGACCGGAACCCAGAGCTTGCACATGTACTTAATGATCCTGGCATTCTCCGACAGACATTGGAAGCAGCAAGGAACCCTGAACTCATGCGTGAGATGATGCGAAACACTGACAGGGCAATGAGTAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGGATGTATGAAAACGTTCAGGAGCCATTTTTGAATGCTACAACTGGGAATGCTGGAAATGATTTGGGTTCAAATCCATTTTCTGCTCTTTTGGCCAACCAGGGTGGGGCACAGGCCCGGGATGGGTCTAACAACCCTTCAACCACTGGCTCAGAAACACCTGCAGGTTCTGTTGCTCCTAATACAAACCCACTTCCTAACCCTTGGGGCGCTGCTGGTGGAAATCAGCCAAATACTACCAGGACAAATCCTGTTGGGGATGGAAGGGCAGCCGGTATTGCTGACCTGGGAGGTCTTGGTCTCCCCGGAATGGAACAGATGCTTGGTGGCATGCCAGATGCTAATGCAATGAATCAGCTTTTGCAGAATCCAGCGATATCACAAATGATGCAAAGCATGCTTTCCAATCCCCAGTACATGAATCAGATTCTGAATCCACAACTACGAGGAATGGTTGATTCAAATCCTCAATTTAGAGAAATGATGCAAAATCCAGAGCTACTGCGGCAGTTAACAAACCCTGAAACAATGCAGCAAATGCTCGCGTTACAGCAGTCGCTATTTTCAGGCAATCGACAGCAACCAACTCAGGATCCAACTCTCACTGGTGGTGCTACAGGTGCACCCAATAATGCTGGGTTGGAGATGCTGATGAACATGTTTGGAGGTCTTGGAGCCGGCAGCTTGGCCGCTGCAAACCCTAATGTACCACCGGAAGAGCTGTATGAAAATCAGCTAAGGCAGCTTCAAGAAATGGGTTTCTTCGATACCCAAGAGAATATCAGGGCATTGCAAGCCACTTCTGGGAACGTCCACGCTGCGGTGGAGCGACTTTTAGGGAATCCCGGGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005776 GO:0005783 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006950 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010604 GO:0010646 GO:0010941 GO:0010959 GO:0012505 GO:0016020 GO:0016043 GO:0016234 GO:0016235 GO:0016236 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019941 GO:0022411 GO:0022607 GO:0022898 GO:0023051 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031593 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032434 GO:0032436 GO:0032879 GO:0032984 GO:0032991 GO:0033554 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0034976 GO:0035973 GO:0036293 GO:0036294 GO:0036503 GO:0042176 GO:0042221 GO:0042802 GO:0042981 GO:0043067 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043271 GO:0043632 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051924 GO:0051926 GO:0060255 GO:0061136 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070013 GO:0070482 GO:0070887 GO:0070925 GO:0071453 GO:0071456 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097352 GO:0140030 GO:1900407 GO:1901019 GO:1901020 GO:1901339 GO:1901340 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902175 GO:1902531 GO:1902882 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903169 GO:1903170 GO:1903201 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1904062 GO:1904063 GO:1904292 GO:1904294 GO:1905037 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2001233 GO:2001242 GO:2001257 GO:2001258
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
UBA ubiquitin

Protein Analysis

550

Amino Acids

58.25

Weight (kDa)

4.69

Isoelectric Point (pI)

41.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 22 - 90 1.2e-08 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 23 - 91 1.6e-21 Ubiquitin family
UBQLN1 PF23195 170 - 292 1.2e-51 Ubiquilin-1-like domain
UBQLN1 PF23195 379 - 457 1.2e-09 Ubiquilin-1-like domain
UBA PF00627 507 - 543 8e-08 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17190 AT2G17200
fragaria_vesca FvH4_2g16610 FvH4_2g16610
malus_domestica MD05G1134300.v1.1 MD10G1139400.v1.1
prunus_persica Prupe.8G178100_v2.0.a1
pyrus_communis pycom05g13090 pycom10g11840
rosa_chinensis RchiOBHm_Chr6g0280671
rosa_laevigata RLG00000013037
rosa_roxburghii Rroxscaffold_7G00187770
rosa_rugosa Rorug06G0133800 Rorug06G0133800 Rorug06G0133800
rosa_samantha Rh6AG246300 Rh6BG248500 Rh6CG249800 Rh6DG241200
rosa_wichuraiana Rw6G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 295, 964
Acc36I ACCTGC 3 cut(s) 295, 950, 964
AccB7I CCANNNNNTGG 1 cut(s) 446
AccBSI CCGCTC 1 cut(s) 302
AccII CGCG 2 cut(s) 360, 1340
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 7 cut(s) 300, 360, 614, 796, 1300, 1485, 1616
AclI AACGTT 1 cut(s) 810
AclWI GGATC 3 cut(s) 662, 1382, 1395
AcoI YGGCCR 2 cut(s) 888, 1482
AcsI RAATTY 1 cut(s) 488
AcuI CTGAAG 1 cut(s) 374
AdeI CACNNNGTG 1 cut(s) 446
AfaI GTAC 3 cut(s) 660, 1211, 1503
AfiI CCNNNNNNNGG 7 cut(s) 404, 446, 901, 918, 1105, 1599, 1615
AflIII ACRYGT 2 cut(s) 655, 1452
AhlI ACTAGT 1 cut(s) 230
AjnI CCWGG 6 cut(s) 114, 346, 670, 894, 1034, 1080
AjuI GAANNNNNNNTTGG 2 cut(s) 1101, 1133
AluBI AGCT 9 cut(s) 173, 476, 649, 1153, 1294, 1479, 1516, 1531, 1540
AluI AGCT 9 cut(s) 173, 476, 649, 1153, 1294, 1479, 1516, 1531, 1540
Alw21I GWGCWC 1 cut(s) 1420
Alw26I GTCTC 2 cut(s) 156, 1100
Alw44I GTGCAC 1 cut(s) 1416
AlwI GGATC 3 cut(s) 662, 1382, 1395
AlwNI CAGNNNCTG 3 cut(s) 511, 965, 1225
Ama87I CYCGRG 2 cut(s) 912, 1640
Aor13HI TCCGGA 1 cut(s) 484
AoxI GGCC 3 cut(s) 888, 909, 1482
ApaLI GTGCAC 1 cut(s) 1416
ApoI RAATTY 1 cut(s) 488
Asp700I GAANNNNTTC 1 cut(s) 810
AspLEI GCGC 1 cut(s) 1007
AspS9I GGNCC 2 cut(s) 268, 910
AsuC2I CCSGG 5 cut(s) 913, 914, 1101, 1641, 1642
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 2 cut(s) 912, 1640
AvaII GGWCC 1 cut(s) 268
AxyI CCTNAGG 1 cut(s) 774
BaeGI GKGCMC 2 cut(s) 907, 1420
BalI TGGCCA 1 cut(s) 890
BamHI GGATCC 1 cut(s) 1387
BbsI GAAGAC 1 cut(s) 473
Bbv12I GWGCWC 1 cut(s) 1420
BbvCI CCTCAGC 1 cut(s) 791
BccI CCATC 2 cut(s) 911, 1049
BciT130I CCWGG 6 cut(s) 116, 348, 672, 896, 1036, 1082
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 5 cut(s) 913, 914, 1101, 1641, 1642
BcoDI GTCTC 2 cut(s) 156, 1100
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 2 cut(s) 231, 330
BfmI CTRYAG 3 cut(s) 242, 957, 1410
BfoI RGCGCY 1 cut(s) 1008
BfuAI ACCTGC 3 cut(s) 295, 950, 964
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 2 cut(s) 912, 1640
BmgT120I GGNCC 2 cut(s) 268, 910
BmiI GGNNCC 7 cut(s) 91, 370, 641, 707, 819, 1389, 1471
BmrI ACTGGG 2 cut(s) 849, 1201
BmuI ACTGGG 2 cut(s) 849, 1201
BpiI GAAGAC 1 cut(s) 473
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 2 cut(s) 791, 1532
BpuMI CCSGG 5 cut(s) 913, 914, 1101, 1641, 1642
BsaBI GATNNNNATC 1 cut(s) 1257
BsaI GGTCTC 1 cut(s) 1100
BsaJI CCNNGG 8 cut(s) 403, 895, 912, 998, 1081, 1099, 1640, 1641
BsaWI WCCGGW 3 cut(s) 484, 636, 1507
BsaXI ACNNNNNCTCC 4 cut(s) 286, 316, 328, 358
Bsc4I CCNNNNNNNGG 7 cut(s) 404, 446, 901, 918, 1105, 1599, 1615
Bse118I RCCGGY 2 cut(s) 1067, 1472
Bse1I ACTGG 4 cut(s) 844, 946, 1207, 1405
Bse21I CCTNAGG 1 cut(s) 774
Bse3DI GCAATG 3 cut(s) 756, 1149, 1583
Bse8I GATNNNNATC 1 cut(s) 1257
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 6 cut(s) 116, 348, 672, 896, 1036, 1082
BseDI CCNNGG 8 cut(s) 403, 895, 912, 998, 1081, 1099, 1640, 1641
BseGI GGATG 3 cut(s) 804, 922, 1060
BseJI GATNNNNATC 1 cut(s) 1257
BseLI CCNNNNNNNGG 7 cut(s) 404, 446, 901, 918, 1105, 1599, 1615
BseMI GCAATG 3 cut(s) 756, 1149, 1583
BseMII CTCAG 7 cut(s) 167, 366, 530, 765, 782, 960, 1397
BseNI ACTGG 4 cut(s) 844, 946, 1207, 1405
BseRI GAGGAG 3 cut(s) 63, 72, 294
BseSI GKGCMC 2 cut(s) 907, 1420
BseYI CCCAGC 1 cut(s) 1430
BsgI GTGCAG 2 cut(s) 267, 521
Bsh1236I CGCG 2 cut(s) 360, 1340
BshFI GGCC 3 cut(s) 890, 911, 1484
BsiHKAI GWGCWC 1 cut(s) 1420
BsiHKCI CYCGRG 2 cut(s) 912, 1640
BsiSI CCGG 8 cut(s) 485, 637, 913, 1068, 1101, 1473, 1508, 1641
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 7 cut(s) 404, 446, 901, 918, 1105, 1599, 1615
BsmAI GTCTC 2 cut(s) 156, 1100
BsmFI GGGAC 1 cut(s) 551
BsmI GAATGC 4 cut(s) 134, 675, 835, 850
BsnI GGCC 3 cut(s) 890, 911, 1484
Bso31I GGTCTC 1 cut(s) 1100
BsoBI CYCGRG 2 cut(s) 912, 1640
Bsp1286I GDGCHC 2 cut(s) 907, 1420
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 4 cut(s) 175, 250, 667, 1387
BspACI CCGC 7 cut(s) 300, 360, 614, 796, 1300, 1485, 1616
BspANI GGCC 3 cut(s) 890, 911, 1484
BspCNI CTCAG 7 cut(s) 166, 367, 529, 766, 783, 959, 1396
BspEI TCCGGA 1 cut(s) 484
BspFNI CGCG 2 cut(s) 360, 1340
BspLI GGNNCC 7 cut(s) 91, 370, 641, 707, 819, 1389, 1471
BspMAI CTGCAG 2 cut(s) 246, 961
BspMI ACCTGC 3 cut(s) 295, 950, 964
BspPI GGATC 3 cut(s) 662, 1382, 1395
BspQI GCTCTTC 1 cut(s) 1506
BspTNI GGTCTC 1 cut(s) 1100
BsrBI CCGCTC 1 cut(s) 302
BsrDI GCAATG 3 cut(s) 756, 1149, 1583
BsrFI RCCGGY 2 cut(s) 1067, 1472
BsrI ACTGG 4 cut(s) 844, 946, 1207, 1405
BssAI RCCGGY 2 cut(s) 1067, 1472
BssECI CCNNGG 8 cut(s) 403, 895, 912, 998, 1081, 1099, 1640, 1641
BssMI GATC 4 cut(s) 175, 250, 667, 1387
BssT1I CCWWGG 2 cut(s) 403, 998
Bst2UI CCWGG 6 cut(s) 116, 348, 672, 896, 1036, 1082
Bst4CI ACNGT 2 cut(s) 127, 259
Bst6I CTCTTC 1 cut(s) 1506
BstAPI GCANNNNNTGC 2 cut(s) 1192, 1333
BstDEI CTNAG 8 cut(s) 153, 375, 516, 774, 791, 946, 1383, 1532
BstF5I GGATG 3 cut(s) 804, 922, 1060
BstFNI CGCG 2 cut(s) 360, 1340
BstH2I RGCGCY 1 cut(s) 1008
BstHHI GCGC 1 cut(s) 1007
BstKTI GATC 4 cut(s) 178, 253, 670, 1390
BstMAI GTCTC 2 cut(s) 156, 1100
BstMBI GATC 4 cut(s) 175, 250, 667, 1387
BstNI CCWGG 6 cut(s) 116, 348, 672, 896, 1036, 1082
BstNSI RCATGY 6 cut(s) 553, 659, 790, 1129, 1195, 1456
BstSFI CTRYAG 3 cut(s) 242, 957, 1410
BstSLI GKGCMC 2 cut(s) 907, 1420
BstUI CGCG 2 cut(s) 360, 1340
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 1 cut(s) 1387
BstYI RGATCY 1 cut(s) 1387
Bsu36I CCTNAGG 1 cut(s) 774
BsuRI GGCC 3 cut(s) 890, 911, 1484
BtsCI GGATG 3 cut(s) 804, 922, 1060
BtsIMutI CAGTG 5 cut(s) 43, 372, 738, 939, 1398
BveI ACCTGC 3 cut(s) 295, 950, 964
CaiI CAGNNNCTG 3 cut(s) 511, 965, 1225
CfoI GCGC 1 cut(s) 1007
Cfr10I RCCGGY 2 cut(s) 1067, 1472
Cfr13I GGNCC 2 cut(s) 268, 910
Cfr9I CCCGGG 2 cut(s) 912, 1640
Csp6I GTAC 3 cut(s) 659, 1210, 1502
CspCI CAANNNNNGTGG 2 cut(s) 880, 915
CviQI GTAC 3 cut(s) 659, 1210, 1502
DdeI CTNAG 8 cut(s) 153, 375, 516, 774, 791, 946, 1383, 1532
DpnI GATC 4 cut(s) 177, 252, 669, 1389
DpnII GATC 4 cut(s) 175, 250, 667, 1387
DraI TTTAAA 1 cut(s) 435
DraIII CACNNNGTG 1 cut(s) 446
EaeI YGGCCR 2 cut(s) 888, 1482
Eam1104I CTCTTC 1 cut(s) 1506
EarI CTCTTC 1 cut(s) 1506
EciI GGCGGA 1 cut(s) 811
Eco130I CCWWGG 2 cut(s) 403, 998
Eco31I GGTCTC 1 cut(s) 1100
Eco32I GATATC 2 cut(s) 628, 1173
Eco47I GGWCC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 374
Eco81I CCTNAGG 1 cut(s) 774
Eco88I CYCGRG 2 cut(s) 912, 1640
EcoRII CCWGG 6 cut(s) 114, 346, 670, 894, 1034, 1080
EcoRV GATATC 2 cut(s) 628, 1173
EcoT14I CCWWGG 2 cut(s) 403, 998
ErhI CCWWGG 2 cut(s) 403, 998
FaqI GGGAC 1 cut(s) 551
FauI CCCGC 1 cut(s) 307
FbaI TGATCA 1 cut(s) 175
FokI GGATG 3 cut(s) 811, 929, 1067
FspBI CTAG 2 cut(s) 231, 330
GlaI GCGC 1 cut(s) 1006
GsaI CCCAGC 1 cut(s) 1434
GsuI CTGGAG 1 cut(s) 330
HaeII RGCGCY 1 cut(s) 1008
HaeIII GGCC 3 cut(s) 890, 911, 1484
HapII CCGG 8 cut(s) 485, 637, 913, 1068, 1101, 1473, 1508, 1641
HhaI GCGC 1 cut(s) 1007
Hin6I GCGC 1 cut(s) 1005
HinP1I GCGC 1 cut(s) 1005
HincII GTYRAC 1 cut(s) 1308
HindII GTYRAC 1 cut(s) 1308
HpaI GTTAAC 1 cut(s) 1308
HpaII CCGG 8 cut(s) 485, 637, 913, 1068, 1101, 1473, 1508, 1641
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 4 cut(s) 262, 1308, 1418, 1609
Hpy188I TCNGA 8 cut(s) 156, 393, 519, 564, 683, 949, 1221, 1227
Hpy188III TCNNGA 7 cut(s) 398, 485, 773, 815, 1289, 1385, 1544
Hpy8I GTNNAC 4 cut(s) 262, 1308, 1418, 1609
HpyAV CCTTC 5 cut(s) 38, 47, 205, 942, 1053
HpyCH4III ACNGT 2 cut(s) 127, 259
HpyCH4IV ACGT 2 cut(s) 810, 1605
HpyF3I CTNAG 8 cut(s) 153, 375, 516, 774, 791, 946, 1383, 1532
HpySE526I ACGT 2 cut(s) 810, 1605
HspAI GCGC 1 cut(s) 1005
Kpn2I TCCGGA 1 cut(s) 484
KroI GCCGGC 1 cut(s) 1472
KroNI GCCGGC 1 cut(s) 1474
Ksp22I TGATCA 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 1308
Kzo9I GATC 4 cut(s) 175, 250, 667, 1387
LguI GCTCTTC 1 cut(s) 1506
LmnI GCTCC 7 cut(s) 307, 349, 473, 817, 976, 1469, 1621
MaeI CTAG 2 cut(s) 231, 330
MaeII ACGT 2 cut(s) 810, 1605
MaeIII GTNAC 3 cut(s) 352, 755, 1341
MalI GATC 4 cut(s) 177, 252, 669, 1389
MbiI CCGCTC 1 cut(s) 302
MboI GATC 4 cut(s) 175, 250, 667, 1387
MboII GAAGA 4 cut(s) 473, 759, 1523, 1549
MflI RGATCY 1 cut(s) 1387
MhlI GDGCHC 2 cut(s) 907, 1420
MlsI TGGCCA 1 cut(s) 890
MluCI AATT 3 cut(s) 157, 488, 1265
MluNI TGGCCA 1 cut(s) 890
MlyI GAGTC 3 cut(s) 113, 388, 508
MmeI TCCRAC 3 cut(s) 706, 1415, 1416
Mox20I TGGCCA 1 cut(s) 890
MroI TCCGGA 1 cut(s) 484
MroNI GCCGGC 1 cut(s) 1472
MroXI GAANNNNTTC 1 cut(s) 810
MscI TGGCCA 1 cut(s) 890
MseI TTAA 4 cut(s) 69, 434, 663, 1307
Msp20I TGGCCA 1 cut(s) 890
MspA1I CMGCKG 2 cut(s) 173, 1487
MspI CCGG 8 cut(s) 485, 637, 913, 1068, 1101, 1473, 1508, 1641
MssI GTTTAAAC 1 cut(s) 435
Mva1269I GAATGC 4 cut(s) 134, 675, 835, 850
MvaI CCWGG 6 cut(s) 116, 348, 672, 896, 1036, 1082
MvnI CGCG 2 cut(s) 360, 1340
NaeI GCCGGC 1 cut(s) 1474
NciI CCSGG 5 cut(s) 913, 914, 1101, 1641, 1642
NdeII GATC 4 cut(s) 175, 250, 667, 1387
NgoMIV GCCGGC 1 cut(s) 1472
NlaIV GGNNCC 7 cut(s) 91, 370, 641, 707, 819, 1389, 1471
NspI RCATGY 6 cut(s) 553, 659, 790, 1129, 1195, 1456
PaeI GCATGC 2 cut(s) 1129, 1195
PaqCI CACCTGC 2 cut(s) 295, 964
PciI ACATGT 2 cut(s) 655, 1452
PciSI GCTCTTC 1 cut(s) 1506
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PctI GAATGC 4 cut(s) 134, 675, 835, 850
PdiI GCCGGC 1 cut(s) 1474
PdmI GAANNNNTTC 1 cut(s) 810
PflMI CCANNNNNTGG 1 cut(s) 446
PleI GAGTC 3 cut(s) 113, 388, 508
PmeI GTTTAAAC 1 cut(s) 435
PpsI GAGTC 3 cut(s) 113, 388, 508
PscI ACATGT 2 cut(s) 655, 1452
Psp1406I AACGTT 1 cut(s) 810
Psp6I CCWGG 6 cut(s) 114, 346, 670, 894, 1034, 1080
PspFI CCCAGC 1 cut(s) 1430
PspGI CCWGG 6 cut(s) 114, 346, 670, 894, 1034, 1080
PspN4I GGNNCC 7 cut(s) 91, 370, 641, 707, 819, 1389, 1471
PspPI GGNCC 2 cut(s) 268, 910
PstI CTGCAG 2 cut(s) 246, 961
PstNI CAGNNNCTG 3 cut(s) 511, 965, 1225
PsuI RGATCY 1 cut(s) 1387
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 3 cut(s) 660, 1211, 1503
RsaNI GTAC 3 cut(s) 659, 1210, 1502
SapI GCTCTTC 1 cut(s) 1506
SaqAI TTAA 4 cut(s) 69, 434, 663, 1307
Sau3AI GATC 4 cut(s) 175, 250, 667, 1387
Sau96I GGNCC 2 cut(s) 268, 910
SbfI CCTGCAGG 1 cut(s) 961
SchI GAGTC 3 cut(s) 113, 388, 508
SdaI CCTGCAGG 1 cut(s) 961
SduI GDGCHC 2 cut(s) 907, 1420
SfcI CTRYAG 3 cut(s) 242, 957, 1410
SinI GGWCC 1 cut(s) 268
SmaI CCCGGG 2 cut(s) 914, 1642
SpeI ACTAGT 1 cut(s) 230
SphI GCATGC 2 cut(s) 1129, 1195
Sse8387I CCTGCAGG 1 cut(s) 961
Sse9I AATT 3 cut(s) 157, 488, 1265
SsiI CCGC 7 cut(s) 300, 360, 614, 796, 1300, 1485, 1616
SspMI CTAG 2 cut(s) 231, 330
StyI CCWWGG 2 cut(s) 403, 998
TaaI ACNGT 2 cut(s) 127, 259
TaiI ACGT 2 cut(s) 813, 1608
TaqI TCGA 5 cut(s) 76, 83, 122, 1369, 1560
TasI AATT 3 cut(s) 157, 488, 1265
TatI WGTACW 2 cut(s) 658, 1209
TauI GCSGC 2 cut(s) 1303, 1487
Tru1I TTAA 4 cut(s) 69, 434, 663, 1307
Tru9I TTAA 4 cut(s) 69, 434, 663, 1307
TscAI CASTG 5 cut(s) 43, 379, 745, 946, 1405
TspDTI ATGAA 8 cut(s) 560, 587, 620, 819, 1160, 1229, 1463, 1536
TspGWI ACGGA 1 cut(s) 260
TspMI CCCGGG 2 cut(s) 912, 1640
TspRI CASTG 5 cut(s) 43, 379, 745, 946, 1405
Van91I CCANNNNNTGG 1 cut(s) 446
VneI GTGCAC 1 cut(s) 1416
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 488
XceI RCATGY 6 cut(s) 553, 659, 790, 1129, 1195, 1456
XmaI CCCGGG 2 cut(s) 912, 1640
XmnI GAANNNNTTC 1 cut(s) 810
XspI CTAG 2 cut(s) 231, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.