RLG00000013037

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0010891
Physical Location & Seq
Reverse (-)
25282010 .. 25285364
3355 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013037

Sequence Viewer

Length: 1710 bp
ATGGGGGTTGAGGGCGATTCAAGCGAGCCTAAAGTAGGTGGTGGAGAAGGCGGAGAGCTGATTAATATTCGGTGCTCTAATGGGTCCAAGTTTTCGGTCAGGGCGGCTTTGGATATCGATGTTGGGGCATTCAAGGCGATTTTGGCTCAGAGTTGTGATATTCCAGCTGATCAGCAAAGGCTGATTTACAAAGGTCGGATTTTGAAGGACGACCAGACCCTCACAAGTTATGGTTTGCAGGCAGATCATACTGTCCACATGGTTCGTGCCTTTGCTCCGGGTGCCTCAACAACACCAGCTGCTCCCGCCGCTAATGCTACTTCTGCAAGTCCCAACACTGCAGCTGCAGCTGGTGTTACTCGTGGTGTTGGTTCCGAGGGCGTTGAGAATCCCGACCTTGGGGCATCTTTGCTATTTGGGCAGGGATTGGGTGGTCTTGGTAGTGGTGGAGCACCTGGTAGTTTATTTGGGAGTGGGCTTCCAGAATTTGAACAAGTGCAGCAGCAACTAACTCAGAACCCGAACATGATGAGGGATATAATGAATACACCTGCCATTCAGAGTCTTATGAATAACCCTGAGTTGATGCGAGGCTTGATCATGAACAATCCACAAATGCGTGACATCATTGACCGGAACCCAGAGCTTGCACATATACTTAATGATCCTGGTATTCTTAGACAGACACTAGAAGCTGCAAGGAACCCTGAACTCATGCGTGAGATGATGCGAAACACTGACAGGGCAATGAGTAATATTGAATCTTCACCTGAGGGATTCAACATGCTGAGACGGATGTATGAAAATGTTCAGGAGCCATTTTTGAACGCTACCACTATTACCGGGAATGGTGGGAATGATGCGGCTGCAAACCCCTTTGCTGCTCTTTTAGGGAATCAGGGAGGAGCACAGGCCAGGGATGGGACTAACAACCCTTCAACCACCGGTTCAGAAACTACTGCAGGTTCTGCAATTCCTAATGCAAACCCTCTTCCCAACCCTTGGAGCAATGCTACTGGAGGAAATCAAACAAACGCACCCAGGTCAACTCCTGCTGGGGATGGGAGGGCACCAAGTATTGGCGGTCTTGGAGGTCTGGGAGGTCTAGGAGGTCTGGGAGGTCTTGGTGGTCTTTCGGGAATGGAACAAATGATGGGTAGCATGCCAGATGCTAATGCAATGAATCAGCTCATGCAGAATCCAGCAATATCACAGATGATGCAAAGCATGCTCTCTAATCCCCAATATATGAATCAGGAGGTGAATGTTTTCCCAACTGAAGTTTTTTTCATGTTTCCAAATTTATTTATATTTCAGTTTAGAGAAATGATGCAAAATCCAGAGCTTCTACGTCAGTTGACAAACCCTGAGACAATGCAGCAAATGCTTGCATTGCAGCAGTCACTATTTTCTCAGACCAATCGACAGCAATCAACTCAGGATCCAACTCAGACTGGTGGTGCTACAGGTACCCCCAATAATGGTGCTGGACTGGAGATGCTGATGAACATGTTTGGTGGTCTTGGAGCTGGCAGCTTGGCTGCACCAGTCAGCAATGTACCACCGGAGGAACGTTATGCAACTCAGCTGTCACAACTTCAAGAAATGGGTTTCTTCGATACTCAAGAGAATATCAGGGCATTGCAAGCCACTTCCGGGAATGTCCATGCTGCAGTAGAGCGACTTTTAGGGAACCCACCAGGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005776 GO:0005783 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006950 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010604 GO:0010646 GO:0010941 GO:0010959 GO:0012505 GO:0016020 GO:0016043 GO:0016234 GO:0016235 GO:0016236 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019941 GO:0022411 GO:0022607 GO:0022898 GO:0023051 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031593 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032434 GO:0032436 GO:0032879 GO:0032984 GO:0032991 GO:0033554 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0034976 GO:0035973 GO:0036293 GO:0036294 GO:0036503 GO:0042176 GO:0042221 GO:0042802 GO:0042981 GO:0043067 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043271 GO:0043632 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051924 GO:0051926 GO:0060255 GO:0061136 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070013 GO:0070482 GO:0070887 GO:0070925 GO:0071453 GO:0071456 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097352 GO:0140030 GO:1900407 GO:1901019 GO:1901020 GO:1901339 GO:1901340 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902175 GO:1902531 GO:1902882 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903169 GO:1903170 GO:1903201 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1904062 GO:1904063 GO:1904292 GO:1904294 GO:1905037 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2001233 GO:2001242 GO:2001257 GO:2001258
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
UBA ubiquitin

Protein Analysis

570

Amino Acids

59.86

Weight (kDa)

4.67

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 21 - 89 8.4e-19 Ubiquitin family
Rad60-SLD PF11976 21 - 88 1.8e-06 Ubiquitin-2 like Rad60 SUMO-like
UBQLN1 PF23195 169 - 294 1.1e-51 Ubiquilin-1-like domain
UBA PF00627 526 - 562 1.3e-08 UBA/TS-N domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17190 AT2G17200
fragaria_vesca FvH4_2g16610 FvH4_2g16610
malus_domestica MD05G1134300.v1.1 MD10G1139400.v1.1
prunus_persica Prupe.8G178100_v2.0.a1
pyrus_communis pycom05g13090 pycom10g11840
rosa_chinensis RchiOBHm_Chr6g0280671
rosa_laevigata RLG00000013037
rosa_roxburghii Rroxscaffold_7G00187770
rosa_rugosa Rorug06G0133800 Rorug06G0133800 Rorug06G0133800
rosa_samantha Rh6AG246300 Rh6BG248500 Rh6CG249800 Rh6DG241200
rosa_wichuraiana Rw6G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 559
Acc36I ACCTGC 2 cut(s) 559, 953
Acc65I GGTACC 1 cut(s) 1469
AccB1I GGYRCC 3 cut(s) 281, 1069, 1469
AccB7I CCANNNNNTGG 2 cut(s) 1002, 1079
AciI CCGC 6 cut(s) 51, 104, 306, 309, 863, 1083
AclI AACGTT 1 cut(s) 1573
AclWI GGATC 3 cut(s) 659, 1436, 1449
AcsI RAATTY 2 cut(s) 485, 1300
AcuI CTGAAG 1 cut(s) 1299
AfaI GTAC 2 cut(s) 1471, 1560
AfiI CCNNNNNNNGG 8 cut(s) 35, 398, 399, 921, 1002, 1079, 1481, 1656
AflIII ACRYGT 1 cut(s) 1509
AgeI ACCGGT 1 cut(s) 944
AgsI TTSAA 9 cut(s) 21, 133, 205, 491, 761, 781, 826, 939, 1601
AjnI CCWGG 5 cut(s) 454, 667, 914, 1040, 1699
Alw21I GWGCWC 3 cut(s) 77, 454, 910
Alw26I GTCTC 2 cut(s) 784, 1364
AlwI GGATC 3 cut(s) 659, 1436, 1449
AlwNI CAGNNNCTG 1 cut(s) 968
AoxI GGCC 1 cut(s) 912
ApoI RAATTY 2 cut(s) 485, 1300
AseI ATTAAT 1 cut(s) 63
AsiGI ACCGGT 1 cut(s) 944
Asp700I GAANNNNTTC 2 cut(s) 807, 1268
Asp718I GGTACC 1 cut(s) 1469
AspS9I GGNCC 1 cut(s) 84
AsuC2I CCSGG 3 cut(s) 279, 844, 1657
AsuHPI GGTGA 2 cut(s) 759, 1273
AvaII GGWCC 1 cut(s) 84
AxyI CCTNAGG 1 cut(s) 771
BaeGI GKGCMC 1 cut(s) 1072
BamHI GGATCC 1 cut(s) 1441
BanI GGYRCC 3 cut(s) 281, 1069, 1469
BauI CACGAG 1 cut(s) 360
Bbv12I GWGCWC 3 cut(s) 77, 454, 910
BccI CCATC 3 cut(s) 914, 1055, 1147
BciT130I CCWGG 5 cut(s) 456, 669, 916, 1042, 1701
BclI TGATCA 2 cut(s) 169, 597
BcnI CCSGG 3 cut(s) 279, 844, 1657
BcoDI GTCTC 2 cut(s) 784, 1364
BfaI CTAG 2 cut(s) 689, 1106
BfmI CTRYAG 5 cut(s) 339, 345, 960, 1464, 1671
BfuAI ACCTGC 2 cut(s) 559, 953
Bme1390I CCNGG 8 cut(s) 279, 456, 669, 844, 916, 1042, 1657, 1701
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 84
BmrFI CCNGG 8 cut(s) 279, 456, 669, 844, 916, 1042, 1657, 1701
BmsI GCATC 8 cut(s) 413, 576, 717, 850, 1159, 1209, 1320, 1488
BpmI CTGGAG 2 cut(s) 1038, 1514
BpuEI CTTGAG 1 cut(s) 1608
BpuMI CCSGG 3 cut(s) 279, 844, 1657
Bsa29I ATCGAT 1 cut(s) 117
BsaJI CCNNGG 5 cut(s) 375, 397, 915, 1001, 1040
BsaWI WCCGGW 3 cut(s) 633, 944, 1564
Bsc4I CCNNNNNNNGG 8 cut(s) 35, 398, 399, 921, 1002, 1079, 1481, 1656
Bse118I RCCGGY 1 cut(s) 944
Bse1I ACTGG 4 cut(s) 1021, 1459, 1497, 1547
Bse21I CCTNAGG 1 cut(s) 771
Bse3DI GCAATG 6 cut(s) 753, 1015, 1185, 1391, 1561, 1640
BseBI CCWGG 5 cut(s) 456, 669, 916, 1042, 1701
BseCI ATCGAT 1 cut(s) 117
BseDI CCNNGG 5 cut(s) 375, 397, 915, 1001, 1040
BseGI GGATG 3 cut(s) 801, 925, 1066
BseLI CCNNNNNNNGG 8 cut(s) 35, 398, 399, 921, 1002, 1079, 1481, 1656
BseMI GCAATG 6 cut(s) 753, 1015, 1185, 1391, 1561, 1640
BseNI ACTGG 4 cut(s) 1021, 1459, 1497, 1547
BseRI GAGGAG 1 cut(s) 918
BseSI GKGCMC 1 cut(s) 1072
BseYI CCCAGC 1 cut(s) 1055
BsgI GTGCAG 2 cut(s) 518, 1527
BshFI GGCC 1 cut(s) 914
BshNI GGYRCC 3 cut(s) 281, 1069, 1469
BshTI ACCGGT 1 cut(s) 944
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 3 cut(s) 77, 454, 910
BsiSI CCGG 6 cut(s) 278, 634, 843, 945, 1565, 1656
BslFI GGGAC 2 cut(s) 315, 937
BslI CCNNNNNNNGG 8 cut(s) 35, 398, 399, 921, 1002, 1079, 1481, 1656
BsmAI GTCTC 2 cut(s) 784, 1364
BsmBI CGTCTC 1 cut(s) 784
BsmFI GGGAC 2 cut(s) 315, 937
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 1 cut(s) 914
Bsp1286I GDGCHC 4 cut(s) 77, 454, 910, 1072
Bsp143I GATC 5 cut(s) 169, 244, 597, 664, 1441
BspACI CCGC 6 cut(s) 51, 104, 306, 309, 863, 1083
BspANI GGCC 1 cut(s) 914
BspDI ATCGAT 1 cut(s) 117
BspHI TCATGA 1 cut(s) 600
BspMAI CTGCAG 4 cut(s) 343, 349, 964, 1675
BspMI ACCTGC 2 cut(s) 559, 953
BspPI GGATC 3 cut(s) 659, 1436, 1449
BspT107I GGYRCC 3 cut(s) 281, 1069, 1469
BsrDI GCAATG 6 cut(s) 753, 1015, 1185, 1391, 1561, 1640
BsrFI RCCGGY 1 cut(s) 944
BsrI ACTGG 4 cut(s) 1021, 1459, 1497, 1547
BssAI RCCGGY 1 cut(s) 944
BssECI CCNNGG 5 cut(s) 375, 397, 915, 1001, 1040
BssMI GATC 5 cut(s) 169, 244, 597, 664, 1441
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 397, 1001
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 5 cut(s) 456, 669, 916, 1042, 1701
Bst4CI ACNGT 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 996
BstAPI GCANNNNNTGC 3 cut(s) 968, 1228, 1384
BstC8I GCNNGC 8 cut(s) 26, 240, 648, 1163, 1229, 1389, 1531, 1647
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 3 cut(s) 801, 925, 1066
BstKTI GATC 5 cut(s) 172, 247, 600, 667, 1444
BstMAI GTCTC 2 cut(s) 784, 1364
BstMBI GATC 5 cut(s) 169, 244, 597, 664, 1441
BstNI CCWGG 5 cut(s) 456, 669, 916, 1042, 1701
BstNSI RCATGY 4 cut(s) 787, 1165, 1231, 1513
BstSCI CCNGG 8 cut(s) 277, 454, 667, 842, 914, 1040, 1655, 1699
BstSFI CTRYAG 5 cut(s) 339, 345, 960, 1464, 1671
BstSLI GKGCMC 1 cut(s) 1072
BstX2I RGATCY 1 cut(s) 1441
BstYI RGATCY 1 cut(s) 1441
Bsu15I ATCGAT 1 cut(s) 117
Bsu36I CCTNAGG 1 cut(s) 771
BsuRI GGCC 1 cut(s) 914
BsuTUI ATCGAT 1 cut(s) 117
BtsCI GGATG 3 cut(s) 801, 925, 1066
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 336, 735
BveI ACCTGC 2 cut(s) 559, 953
Cac8I GCNNGC 8 cut(s) 26, 240, 648, 1163, 1229, 1389, 1531, 1647
CaiI CAGNNNCTG 1 cut(s) 968
CciI TCATGA 1 cut(s) 600
Cfr10I RCCGGY 1 cut(s) 944
Cfr13I GGNCC 1 cut(s) 84
ClaI ATCGAT 1 cut(s) 117
CsiI ACCWGGT 1 cut(s) 454
Csp6I GTAC 2 cut(s) 1470, 1559
CspAI ACCGGT 1 cut(s) 944
CviQI GTAC 2 cut(s) 1470, 1559
DpnI GATC 5 cut(s) 171, 246, 599, 666, 1443
DpnII GATC 5 cut(s) 169, 244, 597, 664, 1441
Eam1104I CTCTTC 1 cut(s) 996
EarI CTCTTC 1 cut(s) 996
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 397, 1001
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 1299
Eco81I CCTNAGG 1 cut(s) 771
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 5 cut(s) 454, 667, 914, 1040, 1699
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 397, 1001
ErhI CCWWGG 2 cut(s) 397, 1001
Esp3I CGTCTC 1 cut(s) 784
FaqI GGGAC 2 cut(s) 315, 937
FauI CCCGC 1 cut(s) 313
FbaI TGATCA 2 cut(s) 169, 597
FokI GGATG 3 cut(s) 808, 932, 1073
FspBI CTAG 2 cut(s) 689, 1106
GsaI CCCAGC 1 cut(s) 1059
GsuI CTGGAG 2 cut(s) 1038, 1514
HaeIII GGCC 1 cut(s) 914
HapII CCGG 6 cut(s) 278, 634, 843, 945, 1565, 1656
HincII GTYRAC 2 cut(s) 1047, 1359
HindII GTYRAC 2 cut(s) 1047, 1359
HinfI GANTC 9 cut(s) 17, 388, 562, 761, 777, 895, 1183, 1198, 1252
HpaII CCGG 6 cut(s) 278, 634, 843, 945, 1565, 1656
HphI GGTGA 2 cut(s) 759, 1273
Hpy166II GTNNAC 3 cut(s) 256, 1047, 1359
Hpy188I TCNGA 8 cut(s) 150, 198, 376, 516, 561, 952, 1416, 1452
Hpy8I GTNNAC 3 cut(s) 256, 1047, 1359
HpyAV CCTTC 3 cut(s) 41, 199, 945
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 2 cut(s) 1351, 1573
HpySE526I ACGT 2 cut(s) 1351, 1573
KpnI GGTACC 1 cut(s) 1473
Ksp22I TGATCA 2 cut(s) 169, 597
Kzo9I GATC 5 cut(s) 169, 244, 597, 664, 1441
LmnI GCTCC 8 cut(s) 280, 307, 449, 814, 905, 1005, 1526, 1703
LweI GCATC 8 cut(s) 413, 576, 717, 850, 1159, 1209, 1320, 1488
MabI ACCWGGT 1 cut(s) 454
MaeI CTAG 2 cut(s) 689, 1106
MaeII ACGT 2 cut(s) 1351, 1573
MaeIII GTNAC 4 cut(s) 355, 620, 1401, 1590
MalI GATC 5 cut(s) 171, 246, 599, 666, 1443
MboI GATC 5 cut(s) 169, 244, 597, 664, 1441
MboII GAAGA 3 cut(s) 756, 983, 1606
MflI RGATCY 1 cut(s) 1441
MhlI GDGCHC 4 cut(s) 77, 454, 910, 1072
MluCI AATT 3 cut(s) 485, 972, 1300
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 2 cut(s) 176, 1469
MroXI GAANNNNTTC 2 cut(s) 807, 1268
MseI TTAA 2 cut(s) 63, 660
MspA1I CMGCKG 5 cut(s) 167, 299, 344, 350, 1588
MspI CCGG 6 cut(s) 278, 634, 843, 945, 1565, 1656
MspR9I CCNGG 8 cut(s) 279, 456, 669, 844, 916, 1042, 1657, 1701
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 5 cut(s) 456, 669, 916, 1042, 1701
NciI CCSGG 3 cut(s) 279, 844, 1657
NdeII GATC 5 cut(s) 169, 244, 597, 664, 1441
NmuCI GTSAC 3 cut(s) 620, 1401, 1590
NspI RCATGY 4 cut(s) 787, 1165, 1231, 1513
PaeI GCATGC 2 cut(s) 1165, 1231
PagI TCATGA 1 cut(s) 600
PaqCI CACCTGC 1 cut(s) 559
PciI ACATGT 1 cut(s) 1509
PctI GAATGC 1 cut(s) 128
PdmI GAANNNNTTC 2 cut(s) 807, 1268
PfeI GAWTC 8 cut(s) 17, 388, 761, 777, 895, 1183, 1198, 1252
PflMI CCANNNNNTGG 2 cut(s) 1002, 1079
PfoI TCCNGGA 1 cut(s) 1655
PinAI ACCGGT 1 cut(s) 944
PleI GAGTC 1 cut(s) 570
PpsI GAGTC 1 cut(s) 570
PscI ACATGT 1 cut(s) 1509
PshBI ATTAAT 1 cut(s) 63
Psp1406I AACGTT 1 cut(s) 1573
Psp6I CCWGG 5 cut(s) 454, 667, 914, 1040, 1699
PspFI CCCAGC 1 cut(s) 1055
PspGI CCWGG 5 cut(s) 454, 667, 914, 1040, 1699
PspPI GGNCC 1 cut(s) 84
PstI CTGCAG 4 cut(s) 343, 349, 964, 1675
PstNI CAGNNNCTG 1 cut(s) 968
PsuI RGATCY 1 cut(s) 1441
PvuII CAGCTG 5 cut(s) 167, 299, 344, 350, 1588
RsaI GTAC 2 cut(s) 1471, 1560
RsaNI GTAC 2 cut(s) 1470, 1559
SaqAI TTAA 2 cut(s) 63, 660
Sau3AI GATC 5 cut(s) 169, 244, 597, 664, 1441
Sau96I GGNCC 1 cut(s) 84
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 8 cut(s) 279, 456, 669, 844, 916, 1042, 1657, 1701
SduI GDGCHC 4 cut(s) 77, 454, 910, 1072
SexAI ACCWGGT 1 cut(s) 454
SfaNI GCATC 8 cut(s) 413, 576, 717, 850, 1159, 1209, 1320, 1488
SfcI CTRYAG 5 cut(s) 339, 345, 960, 1464, 1671
SinI GGWCC 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 1623
SmoI CTYRAG 1 cut(s) 1623
SphI GCATGC 2 cut(s) 1165, 1231
Sse9I AATT 3 cut(s) 485, 972, 1300
SsiI CCGC 6 cut(s) 51, 104, 306, 309, 863, 1083
SspI AATATT 2 cut(s) 67, 757
SspMI CTAG 2 cut(s) 689, 1106
StyD4I CCNGG 8 cut(s) 277, 454, 667, 842, 914, 1040, 1655, 1699
StyI CCWWGG 2 cut(s) 397, 1001
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 2 cut(s) 1354, 1576
TaqI TCGA 3 cut(s) 117, 1423, 1617
TaqII GACCGA 1 cut(s) 85
TasI AATT 3 cut(s) 485, 972, 1300
TauI GCSGC 3 cut(s) 107, 311, 866
TfiI GAWTC 8 cut(s) 17, 388, 761, 777, 895, 1183, 1198, 1252
Tru1I TTAA 2 cut(s) 63, 660
Tru9I TTAA 2 cut(s) 63, 660
TscAI CASTG 2 cut(s) 343, 742
TseFI GTSAC 3 cut(s) 620, 1401, 1590
Tsp45I GTSAC 3 cut(s) 620, 1401, 1590
TspDTI ATGAA 8 cut(s) 557, 584, 617, 816, 1196, 1265, 1279, 1520
TspGWI ACGGA 1 cut(s) 808
TspRI CASTG 2 cut(s) 343, 742
Van91I CCANNNNNTGG 2 cut(s) 1002, 1079
VpaK11BI GGWCC 1 cut(s) 84
VspI ATTAAT 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 2 cut(s) 485, 1300
XceI RCATGY 4 cut(s) 787, 1165, 1231, 1513
XmnI GAANNNNTTC 2 cut(s) 807, 1268
XspI CTAG 2 cut(s) 689, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.