Prupe.8G178100_v2.0.a1

Ubiquitin domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010891
Physical Location & Seq
Forward (+)
17947630 .. 17952123
4494 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G178100.1

Sequence Viewer

Length: 1668 bp
ATGGGTGCAGAGGGCGATTCGAGCGAGCCTAAAGTCAGTGGCGATGGAGGAGAGCAGATTAATATTCGATGCTCCAATGGGTCCAAGTTTTCGGTGAGGGCGAGCCTGGACTCGACTGTTGGGGATTTCAAGGCAATTTTGGCTCAGAATTGCGATATTCCAGCTGAGCAGCAAAGGCTGATTTACAAAGGTCGTATTTTGAAGGACGACCAGACCCTGACTAGTTATGGTCTGCAGGCAGATCATACTGTTCATATGGTACGTGCCTTTGCTGCAGCTGCCTCAACCCCTGCTGCTCCTGCTGCTAATGCTACTTCTGCAAGTCCTAACACTGCACCAGGTGTTACACGTGGTGTTGGCTCCACTGAACGCGATGGGCTTCAAAGTCCCGACCTTGGGGCATCTTTGTTATTTGGGCAGGGTTTAAACCCACTTGGTGGTGGTGGAGGAGCTCCTGGTTTATTTGGAGCTGGGCTTCCGGACTTTGAACAAGTGCAGCAACAACTGACTCAGAATCCGGACATGATGAGGGACGTAATGAACATGCCTGCCATTCAAAGTCTAATGAATAACCCTGATTTGATGCGAGGCTTGATCATGAACAATCCGCAAATGCGTGATATCATTGACCGGAACCCAGAGCTTGCACATATACTTAATGATCCTGGCATTCTCCGACAGACATTAGAAGCTGCAAGGAGCCCAGAACTCATGCGTGAGATGATGCGAAACACTGACAGGGCAATGAGTAATATTGAGTCTTCACCTGAGGGATTCAACATGCTAAGGCGGATGTATGAAAATGTTCAGGAGCCATTTTTGAATGCTACGACAATGACCGGGAATGCTGGAAATGATTTGGGTTCAAATCCATTTTCTGCTCTTTTGGGCAACCAGGGTGGGGCACAAGTCAGGGATGGGTCTAACAACCCTTCAACCACTGGTTCAGAAACGACTGCAGGCTCTGTTGCTCCGAATACAAACCCACTTCCCAACCCGTGGGGCAATACTGTTGGAGGAAATCAACCAAACACCACCAGGCCACCTCCTGCTGGGGATGGAAGGGCACCTGGTATTGCTGGCCTTGGAGGGCTTGGTCTCCCCGGAATGGAACAGATGCTTGGTGGCATGCCAGATGCTAATGTAATGAATCAGCTTTTGCAGAATCCGGCAATATCCCAGATGATGCAAAGCATGCTCTCGAATCCCCAGTACATGAATCAGATTATGAGCCTCAATCCACAACTACGCGGCATGGTTGATTTAAATCCTCAACTTAGAGAAATGATGCAAAATCCGGAGCTCTTACGTCAGTTAACAAACCCAGAGACAATGCAGCAAATGCTTGCTTTACAGCAGTCGCTATTTTCTCAGACCAATCGACAGCAATCAACTCAGGATCCAGCTCAGACTGGTGGTGTTACAGGAGGCCCTAATAATGCTGCTGGGTTGGATATGCTGATGAACATGTTTGGTGGTCTTGGAGCTGGCAGCTTGGCTGCTGCAAACAACCCTAATGTACCACCTGAGGAACTGTATGCGACGCAGCTGACACAGCTTCAAGAGATGGGTTTCTTTGACACCCAAGAGAATATCAGGGCATTGCAAGCCACTTCCGGGAACGTCCATGCTGCGGTAGAGCGACTTTTAGGGAATCCCGGGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0001666 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005773 GO:0005776 GO:0005783 GO:0005829 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006914 GO:0006950 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0010604 GO:0010646 GO:0010941 GO:0010959 GO:0012505 GO:0016020 GO:0016043 GO:0016234 GO:0016235 GO:0016236 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019941 GO:0022411 GO:0022607 GO:0022898 GO:0023051 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031593 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032434 GO:0032436 GO:0032879 GO:0032984 GO:0032991 GO:0033554 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0034976 GO:0035973 GO:0036293 GO:0036294 GO:0036503 GO:0042176 GO:0042221 GO:0042802 GO:0042981 GO:0043067 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043269 GO:0043271 GO:0043632 GO:0043933 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051924 GO:0051926 GO:0060255 GO:0061136 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070013 GO:0070482 GO:0070887 GO:0070925 GO:0071453 GO:0071456 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0080134 GO:0080135 GO:0097352 GO:0140030 GO:1900407 GO:1901019 GO:1901020 GO:1901339 GO:1901340 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902175 GO:1902531 GO:1902882 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903169 GO:1903170 GO:1903201 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1904062 GO:1904063 GO:1904292 GO:1904294 GO:1905037 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2001233 GO:2001242 GO:2001257 GO:2001258
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
UBA ubiquitin

Protein Analysis

556

Amino Acids

58.75

Weight (kDa)

4.67

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010891)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17190 AT2G17200
fragaria_vesca FvH4_2g16610 FvH4_2g16610
malus_domestica MD05G1134300.v1.1 MD10G1139400.v1.1
prunus_persica Prupe.8G178100_v2.0.a1
pyrus_communis pycom05g13090 pycom10g11840
rosa_chinensis RchiOBHm_Chr6g0280671
rosa_laevigata RLG00000013037
rosa_roxburghii Rroxscaffold_7G00187770
rosa_rugosa Rorug06G0133800 Rorug06G0133800 Rorug06G0133800
rosa_samantha Rh6AG246300 Rh6BG248500 Rh6CG249800 Rh6DG241200
rosa_wichuraiana Rw6G021310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1066
AccB7I CCANNNNNTGG 2 cut(s) 437, 999
AccII CGCG 2 cut(s) 372, 1251
AccIII TCCGGA 3 cut(s) 478, 517, 1297
AciI CCGC 4 cut(s) 608, 790, 1251, 1634
AclWI GGATC 3 cut(s) 656, 1394, 1407
AcvI CACGTG 1 cut(s) 350
AdeI CACNNNGTG 3 cut(s) 341, 353, 437
AfaI GTAC 3 cut(s) 261, 1214, 1521
AfiI CCNNNNNNNGG 9 cut(s) 395, 396, 437, 901, 999, 1052, 1108, 1617, 1633
AflIII ACRYGT 2 cut(s) 347, 1467
AhlI ACTAGT 1 cut(s) 221
AjnI CCWGG 7 cut(s) 105, 337, 454, 664, 894, 1037, 1069
AjuI GAANNNNNNNTTGG 2 cut(s) 1104, 1136
Alw21I GWGCWC 2 cut(s) 454, 1305
Alw26I GTCTC 2 cut(s) 1103, 1322
AlwI GGATC 3 cut(s) 656, 1394, 1407
AlwNI CAGNNNCTG 2 cut(s) 217, 965
Ama87I CYCGRG 1 cut(s) 1658
Aor13HI TCCGGA 3 cut(s) 478, 517, 1297
AoxI GGCC 3 cut(s) 1040, 1081, 1429
AseI ATTAAT 1 cut(s) 60
Asp700I GAANNNNTTC 1 cut(s) 804
AspS9I GGNCC 2 cut(s) 81, 1430
AsuC2I CCSGG 5 cut(s) 841, 1104, 1618, 1659, 1660
AsuHPI GGTGA 2 cut(s) 106, 756
AvaI CYCGRG 1 cut(s) 1658
AvaII GGWCC 1 cut(s) 81
AxyI CCTNAGG 2 cut(s) 768, 1527
BaeGI GKGCMC 2 cut(s) 907, 1069
BamHI GGATCC 1 cut(s) 1399
BanI GGYRCC 1 cut(s) 1066
BanII GRGCYC 3 cut(s) 454, 704, 1305
BbrPI CACGTG 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 2 cut(s) 454, 1305
BccI CCATC 5 cut(s) 38, 368, 911, 1052, 1561
BciT130I CCWGG 7 cut(s) 107, 339, 456, 666, 896, 1039, 1071
BclI TGATCA 1 cut(s) 594
BcnI CCSGG 5 cut(s) 841, 1104, 1618, 1659, 1660
BcoDI GTCTC 2 cut(s) 1103, 1322
BcuI ACTAGT 1 cut(s) 221
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 3 cut(s) 233, 273, 957
BlpI GCTNAGC 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 81
BmeT110I CYCGRG 1 cut(s) 1658
BmgT120I GGNCC 2 cut(s) 81, 1430
BmiI GGNNCC 7 cut(s) 82, 361, 635, 701, 813, 1068, 1401
BmrI ACTGGG 1 cut(s) 1204
BmsI GCATC 8 cut(s) 59, 410, 573, 714, 1107, 1126, 1176, 1278
BmuI ACTGGG 1 cut(s) 1204
BpiI GAAGAC 1 cut(s) 753
Bpu10I CCTNAGC 1 cut(s) 785
Bpu1102I GCTNAGC 1 cut(s) 165
BpuMI CCSGG 5 cut(s) 841, 1104, 1618, 1659, 1660
BsaAI YACGTR 2 cut(s) 263, 350
BsaBI GATNNNNATC 1 cut(s) 1266
BsaI GGTCTC 1 cut(s) 1103
BsaJI CCNNGG 7 cut(s) 394, 895, 998, 1084, 1102, 1658, 1659
BsaWI WCCGGW 4 cut(s) 478, 517, 630, 1297
Bsc4I CCNNNNNNNGG 9 cut(s) 395, 396, 437, 901, 999, 1052, 1108, 1617, 1633
Bse1I ACTGG 3 cut(s) 946, 1210, 1417
Bse21I CCTNAGG 2 cut(s) 768, 1527
Bse3DI GCAATG 2 cut(s) 750, 1601
Bse8I GATNNNNATC 1 cut(s) 1266
BseAI TCCGGA 3 cut(s) 478, 517, 1297
BseBI CCWGG 7 cut(s) 107, 339, 456, 666, 896, 1039, 1071
BseDI CCNNGG 7 cut(s) 394, 895, 998, 1084, 1102, 1658, 1659
BseGI GGATG 3 cut(s) 798, 922, 1063
BseJI GATNNNNATC 1 cut(s) 1266
BseLI CCNNNNNNNGG 9 cut(s) 395, 396, 437, 901, 999, 1052, 1108, 1617, 1633
BseMI GCAATG 2 cut(s) 750, 1601
BseMII CTCAG 8 cut(s) 156, 158, 524, 759, 1385, 1409, 1421, 1518
BseNI ACTGG 3 cut(s) 946, 1210, 1417
BseRI GAGGAG 2 cut(s) 63, 462
BseSI GKGCMC 2 cut(s) 907, 1069
BseYI CCCAGC 3 cut(s) 470, 1052, 1445
BsgI GTGCAG 3 cut(s) 27, 318, 515
Bsh1236I CGCG 2 cut(s) 372, 1251
BshFI GGCC 3 cut(s) 1042, 1083, 1431
BshNI GGYRCC 1 cut(s) 1066
BsiHKAI GWGCWC 2 cut(s) 454, 1305
BsiHKCI CYCGRG 1 cut(s) 1658
BsiSI CCGG 9 cut(s) 479, 518, 631, 840, 1104, 1169, 1298, 1617, 1659
BslFI GGGAC 2 cut(s) 372, 545
BslI CCNNNNNNNGG 9 cut(s) 395, 396, 437, 901, 999, 1052, 1108, 1617, 1633
BsmAI GTCTC 2 cut(s) 1103, 1322
BsmFI GGGAC 2 cut(s) 372, 545
BsmI GAATGC 3 cut(s) 669, 829, 850
BsnI GGCC 3 cut(s) 1042, 1083, 1431
Bso31I GGTCTC 1 cut(s) 1103
BsoBI CYCGRG 1 cut(s) 1658
Bsp1286I GDGCHC 5 cut(s) 454, 704, 907, 1069, 1305
Bsp13I TCCGGA 3 cut(s) 478, 517, 1297
Bsp143I GATC 4 cut(s) 241, 594, 661, 1399
Bsp1720I GCTNAGC 1 cut(s) 165
BspACI CCGC 4 cut(s) 608, 790, 1251, 1634
BspANI GGCC 3 cut(s) 1042, 1083, 1431
BspCNI CTCAG 8 cut(s) 157, 157, 523, 760, 1384, 1408, 1420, 1519
BspEI TCCGGA 3 cut(s) 478, 517, 1297
BspFNI CGCG 2 cut(s) 372, 1251
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 7 cut(s) 82, 361, 635, 701, 813, 1068, 1401
BspMAI CTGCAG 3 cut(s) 237, 277, 961
BspPI GGATC 3 cut(s) 656, 1394, 1407
BspT107I GGYRCC 1 cut(s) 1066
BspTNI GGTCTC 1 cut(s) 1103
BsrDI GCAATG 2 cut(s) 750, 1601
BsrI ACTGG 3 cut(s) 946, 1210, 1417
BssECI CCNNGG 7 cut(s) 394, 895, 998, 1084, 1102, 1658, 1659
BssMI GATC 4 cut(s) 241, 594, 661, 1399
BssT1I CCWWGG 2 cut(s) 394, 1084
Bst2UI CCWGG 7 cut(s) 107, 339, 456, 666, 896, 1039, 1071
Bst4CI ACNGT 4 cut(s) 118, 250, 1012, 1536
BstAPI GCANNNNNTGC 2 cut(s) 1195, 1342
BstBAI YACGTR 2 cut(s) 263, 350
BstDSI CCRYGG 1 cut(s) 998
BstF5I GGATG 3 cut(s) 798, 922, 1063
BstFNI CGCG 2 cut(s) 372, 1251
BstKTI GATC 4 cut(s) 244, 597, 664, 1402
BstMAI GTCTC 2 cut(s) 1103, 1322
BstMBI GATC 4 cut(s) 241, 594, 661, 1399
BstNI CCWGG 7 cut(s) 107, 339, 456, 666, 896, 1039, 1071
BstNSI RCATGY 5 cut(s) 547, 784, 1132, 1198, 1471
BstSFI CTRYAG 3 cut(s) 233, 273, 957
BstSLI GKGCMC 2 cut(s) 907, 1069
BstUI CGCG 2 cut(s) 372, 1251
BstV2I GAAGAC 1 cut(s) 753
BstX2I RGATCY 1 cut(s) 1399
BstYI RGATCY 1 cut(s) 1399
Bsu36I CCTNAGG 2 cut(s) 768, 1527
BsuRI GGCC 3 cut(s) 1042, 1083, 1431
BtgI CCRYGG 1 cut(s) 998
BtgZI GCGATG 2 cut(s) 57, 387
BtsCI GGATG 3 cut(s) 798, 922, 1063
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 5 cut(s) 43, 330, 363, 732, 939
CaiI CAGNNNCTG 2 cut(s) 217, 965
CciI TCATGA 1 cut(s) 597
Cfr13I GGNCC 2 cut(s) 81, 1430
Cfr9I CCCGGG 1 cut(s) 1658
CseI GACGC 1 cut(s) 1552
CsiI ACCWGGT 2 cut(s) 337, 1069
Csp6I GTAC 3 cut(s) 260, 1213, 1520
CspCI CAANNNNNGTGG 2 cut(s) 880, 915
CviQI GTAC 3 cut(s) 260, 1213, 1520
DpnI GATC 4 cut(s) 243, 596, 663, 1401
DpnII GATC 4 cut(s) 241, 594, 661, 1399
DraI TTTAAA 2 cut(s) 426, 1266
DraIII CACNNNGTG 3 cut(s) 341, 353, 437
EciI GGCGGA 1 cut(s) 805
Ecl136II GAGCTC 2 cut(s) 452, 1303
Eco130I CCWWGG 2 cut(s) 394, 1084
Eco24I GRGCYC 3 cut(s) 454, 704, 1305
Eco31I GGTCTC 1 cut(s) 1103
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 1 cut(s) 81
Eco53kI GAGCTC 2 cut(s) 452, 1303
Eco72I CACGTG 1 cut(s) 350
Eco81I CCTNAGG 2 cut(s) 768, 1527
Eco88I CYCGRG 1 cut(s) 1658
EcoICRI GAGCTC 2 cut(s) 452, 1303
EcoO109I RGGNCCY 1 cut(s) 1430
EcoRII CCWGG 7 cut(s) 105, 337, 454, 664, 894, 1037, 1069
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 394, 1084
EcoT38I GRGCYC 3 cut(s) 454, 704, 1305
ErhI CCWWGG 2 cut(s) 394, 1084
FaqI GGGAC 2 cut(s) 372, 545
FauNDI CATATG 1 cut(s) 255
FbaI TGATCA 1 cut(s) 594
FokI GGATG 3 cut(s) 805, 929, 1070
FriOI GRGCYC 3 cut(s) 454, 704, 1305
FspBI CTAG 1 cut(s) 222
GsaI CCCAGC 3 cut(s) 474, 1056, 1449
HaeIII GGCC 3 cut(s) 1042, 1083, 1431
HapII CCGG 9 cut(s) 479, 518, 631, 840, 1104, 1169, 1298, 1617, 1659
HgaI GACGC 1 cut(s) 1552
HincII GTYRAC 1 cut(s) 1317
HindII GTYRAC 1 cut(s) 1317
HpaI GTTAAC 1 cut(s) 1317
HpaII CCGG 9 cut(s) 479, 518, 631, 840, 1104, 1169, 1298, 1617, 1659
HphI GGTGA 2 cut(s) 106, 756
Hpy166II GTNNAC 1 cut(s) 1317
Hpy188I TCNGA 8 cut(s) 147, 513, 677, 949, 975, 1224, 1374, 1410
Hpy188III TCNNGA 9 cut(s) 389, 479, 518, 598, 809, 1201, 1298, 1397, 1562
Hpy8I GTNNAC 1 cut(s) 1317
Hpy99I CGWCG 1 cut(s) 1546
HpyAV CCTTC 3 cut(s) 196, 942, 1056
HpyCH4III ACNGT 4 cut(s) 118, 250, 1012, 1536
HpyCH4IV ACGT 5 cut(s) 262, 349, 534, 1309, 1623
HpySE526I ACGT 5 cut(s) 262, 349, 534, 1309, 1623
Kpn2I TCCGGA 3 cut(s) 478, 517, 1297
Ksp22I TGATCA 1 cut(s) 594
KspAI GTTAAC 1 cut(s) 1317
Kzo9I GATC 4 cut(s) 241, 594, 661, 1399
LweI GCATC 8 cut(s) 59, 410, 573, 714, 1107, 1126, 1176, 1278
MabI ACCWGGT 2 cut(s) 337, 1069
MaeI CTAG 1 cut(s) 222
MaeII ACGT 5 cut(s) 262, 349, 534, 1309, 1623
MaeIII GTNAC 2 cut(s) 343, 1420
MalI GATC 4 cut(s) 243, 596, 663, 1401
MboI GATC 4 cut(s) 241, 594, 661, 1399
MboII GAAGA 1 cut(s) 753
MflI RGATCY 1 cut(s) 1399
MhlI GDGCHC 5 cut(s) 454, 704, 907, 1069, 1305
MluCI AATT 2 cut(s) 135, 148
MlyI GAGTC 3 cut(s) 104, 502, 767
MmeI TCCRAC 3 cut(s) 700, 994, 1431
MroI TCCGGA 3 cut(s) 478, 517, 1297
MroXI GAANNNNTTC 1 cut(s) 804
MseI TTAA 5 cut(s) 60, 425, 657, 1265, 1316
MspA1I CMGCKG 3 cut(s) 164, 278, 1549
MspI CCGG 9 cut(s) 479, 518, 631, 840, 1104, 1169, 1298, 1617, 1659
MssI GTTTAAAC 1 cut(s) 426
Mva1269I GAATGC 3 cut(s) 669, 829, 850
MvaI CCWGG 7 cut(s) 107, 339, 456, 666, 896, 1039, 1071
MvnI CGCG 2 cut(s) 372, 1251
NciI CCSGG 5 cut(s) 841, 1104, 1618, 1659, 1660
NdeI CATATG 1 cut(s) 255
NdeII GATC 4 cut(s) 241, 594, 661, 1399
NlaIV GGNNCC 7 cut(s) 82, 361, 635, 701, 813, 1068, 1401
NspI RCATGY 5 cut(s) 547, 784, 1132, 1198, 1471
PaeI GCATGC 2 cut(s) 1132, 1198
PagI TCATGA 1 cut(s) 597
PciI ACATGT 1 cut(s) 1467
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PctI GAATGC 3 cut(s) 669, 829, 850
PdmI GAANNNNTTC 1 cut(s) 804
PfeI GAWTC 8 cut(s) 17, 514, 774, 1150, 1165, 1204, 1219, 1654
PflMI CCANNNNNTGG 2 cut(s) 437, 999
PfoI TCCNGGA 1 cut(s) 1616
PleI GAGTC 3 cut(s) 104, 502, 766
PmaCI CACGTG 1 cut(s) 350
PmeI GTTTAAAC 1 cut(s) 426
PmlI CACGTG 1 cut(s) 350
PpsI GAGTC 3 cut(s) 104, 502, 766
Ppu21I YACGTR 2 cut(s) 263, 350
PscI ACATGT 1 cut(s) 1467
PshBI ATTAAT 1 cut(s) 60
Psp124BI GAGCTC 2 cut(s) 454, 1305
Psp6I CCWGG 7 cut(s) 105, 337, 454, 664, 894, 1037, 1069
PspCI CACGTG 1 cut(s) 350
PspFI CCCAGC 3 cut(s) 470, 1052, 1445
PspGI CCWGG 7 cut(s) 105, 337, 454, 664, 894, 1037, 1069
PspN4I GGNNCC 7 cut(s) 82, 361, 635, 701, 813, 1068, 1401
PspPI GGNCC 2 cut(s) 81, 1430
PstI CTGCAG 3 cut(s) 237, 277, 961
PstNI CAGNNNCTG 2 cut(s) 217, 965
PsuI RGATCY 1 cut(s) 1399
PvuII CAGCTG 3 cut(s) 164, 278, 1549
RsaI GTAC 3 cut(s) 261, 1214, 1521
RsaNI GTAC 3 cut(s) 260, 1213, 1520
SacI GAGCTC 2 cut(s) 454, 1305
SaqAI TTAA 5 cut(s) 60, 425, 657, 1265, 1316
Sau3AI GATC 4 cut(s) 241, 594, 661, 1399
Sau96I GGNCC 2 cut(s) 81, 1430
SchI GAGTC 3 cut(s) 104, 502, 767
SduI GDGCHC 5 cut(s) 454, 704, 907, 1069, 1305
SexAI ACCWGGT 2 cut(s) 337, 1069
SfaNI GCATC 8 cut(s) 59, 410, 573, 714, 1107, 1126, 1176, 1278
SfcI CTRYAG 3 cut(s) 233, 273, 957
SinI GGWCC 1 cut(s) 81
SmaI CCCGGG 1 cut(s) 1660
SmiI ATTTAAAT 1 cut(s) 1266
SpeI ACTAGT 1 cut(s) 221
SphI GCATGC 2 cut(s) 1132, 1198
Sse9I AATT 2 cut(s) 135, 148
SsiI CCGC 4 cut(s) 608, 790, 1251, 1634
SspI AATATT 2 cut(s) 64, 754
SspMI CTAG 1 cut(s) 222
SstI GAGCTC 2 cut(s) 454, 1305
StyI CCWWGG 2 cut(s) 394, 1084
SwaI ATTTAAAT 1 cut(s) 1266
TaaI ACNGT 4 cut(s) 118, 250, 1012, 1536
TaiI ACGT 5 cut(s) 265, 352, 537, 1312, 1626
TaqI TCGA 5 cut(s) 20, 67, 113, 1202, 1381
TasI AATT 2 cut(s) 135, 148
TatI WGTACW 1 cut(s) 1212
TauI GCSGC 1 cut(s) 1254
TfiI GAWTC 8 cut(s) 17, 514, 774, 1150, 1165, 1204, 1219, 1654
Tru1I TTAA 5 cut(s) 60, 425, 657, 1265, 1316
Tru9I TTAA 5 cut(s) 60, 425, 657, 1265, 1316
TscAI CASTG 5 cut(s) 43, 337, 370, 739, 946
TspDTI ATGAA 8 cut(s) 242, 554, 581, 614, 813, 1163, 1232, 1478
TspMI CCCGGG 1 cut(s) 1658
TspRI CASTG 5 cut(s) 43, 337, 370, 739, 946
Van91I CCANNNNNTGG 2 cut(s) 437, 999
VpaK11BI GGWCC 1 cut(s) 81
VspI ATTAAT 1 cut(s) 60
XceI RCATGY 5 cut(s) 547, 784, 1132, 1198, 1471
XmaI CCCGGG 1 cut(s) 1658
XmnI GAANNNNTTC 1 cut(s) 804
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.