Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014404

Physical Location & Seq

Genomic Coordinates Reverse (-)

14712949 .. 14715080

Gene Structure 2132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGAGCCTCGACTACTCGTTCGTTAGATTGCTCTTATTGCTCTCCTTGTTTTGCTTCCAATGTGTGTTTGGCAGAGAAAGAGCAGCAGATTCAGTAGGCTTGCAGACCATCAATGTAGATCACAAGGCTAAAAGCTCTTTTGTTTTCAATGTCAAGAGCTTTGGTGCCAAAGCAGATGGCCAAACCGATGACAGCAAAGCCTTCACAGCAGCGTGGAAAGAGGCGTGTCAGTCCAAAGGTAGAGTCCACCTCATAATCCCAAGAGGAAAATACATGGTTGGCCCTCTTAAGTTTTCAGGCCCCTGCAGAAACGTATCGGCTCTAAATCTTCGAATGAATGGTTACTTGAAGGCTACAACCGAGTTGTCCAAGTATGAATTCGGTGGCGGTTGGATTCAATTTGCTTGGACCAAGGGGCTAACCTTGACCGGAGGCGGAACCTTTGATGGTCAAGGTGCTAAAGCCTGGCCTCACAACAAGTGCTCTAAGGACTCCAATTGCAAACTCCTTCCAACTAGTTTGAAATTTATTGGCATGAATAAGACAGTGATCCGGGGAATATCTTCAGTGAACAGCATGTTCTTTCATATAGCAGTTGTAGATTGTCATTACTTCAAAGGCAGTAAACTCAAGATTCAAGCCCCAGAAACTAGTCCTAATACTGATGGAATCCATATCGAACGAAGCTCAAGCGTGTACTTCTCTTCGTCACACATTGCTACTGGTGATGATTGCATATCAGTTGGAGAAGGGAACTCACACGTTACCATAACTAGCATTGCTTGTGGACCTGGTCATGGCATCAGTGTGGGAAGTTTGGGAAAATATCCGAATGAAGGAGATGTGAGTGGGCTTGTGGTCAGAGACTGCACCATTTCAGGTACCACAAATGGTATTAGGATCAAGACATGGGCTAACTCTCCAGGTAGAAGTGCAGCCACCAACATGACATTCACAAACATCGTCATGAACAATGTGACCAACCCCATCATAATCGATCAGTTGTATTGTCCACTAAGGTCTTGCGCTTCTCAGACGCCATCGAAAGTGAAGTTGAGTGACATATACTTCAAGAACATAAGAGGCACATCTTCGTCTCAAGTTGCAGTTGCACTTGAATGTAGCAGAGGGATACCATGCCAAAATATTTACCTTGAAGATGTTCACCTGAACTTGGCATCTGGGAAGAAGGAAGTCACTTCAACTTGCAGTAATGTTAAAGCCAAATTCATTGGCACTCAAATCCCACCTCCATGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010393 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019863 GO:0019865 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044877 GO:0045488 GO:0045490 GO:0047911 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

421

Amino Acids

45.29

Weight (kDa)

9.24

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pect-lyase_RHGA_epim	PF12708	49 - 93	1.7e-06	Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28	PF00295	76 - 409	6.8e-92	Glycosyl hydrolases family 28

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18180
fragaria_vesca	FvH4_2g16950
malus_domestica	MD05G1141300.v1.1 MD05G1142200.v1.1
prunus_persica	Prupe.8G181300_v2.0.a1
pyrus_communis	pycom05g13670
rosa_chinensis	RchiOBHm_Chr6g0281151
rosa_laevigata	RLG00000012990
rosa_multiflora	Rmu_co8202118.1_g000001 Rmu_sc0035236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187250
rosa_rugosa	Rorug06G0139300
rosa_samantha	Rh6AG251100 Rh6BG254300 Rh6CG253700 Rh6DG245700
rosa_wichuraiana	Rw6G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	881
AccB1I	GGYRCC	2 cut(s)	164, 881
AciI	CCGC	2 cut(s)	387, 435
AclWI	GGATC	2 cut(s)	544, 908
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	3 cut(s)	377, 524, 1226
AcuI	CTGAAG	1 cut(s)	549
AcyI	GRCGYC	1 cut(s)	1037
AfaI	GTAC	3 cut(s)	698, 883, 1258
AfiI	CCNNNNNNNGG	3 cut(s)	797, 836, 1174
AflII	CTTAAG	1 cut(s)	287
AflIII	ACRYGT	1 cut(s)	760
AhlI	ACTAGT	2 cut(s)	515, 650
AjnI	CCWGG	3 cut(s)	464, 790, 922
AjuI	GAANNNNNNNTTGG	4 cut(s)	362, 394, 935, 967
AluBI	AGCT	3 cut(s)	135, 159, 687
AluI	AGCT	3 cut(s)	135, 159, 687
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	2 cut(s)	858, 1101
AlwI	GGATC	2 cut(s)	544, 908
AlwNI	CAGNNNCTG	1 cut(s)	867
AoxI	GGCC	4 cut(s)	178, 280, 298, 467
ApeKI	GCWGC	3 cut(s)	83, 209, 935
ApoI	RAATTY	3 cut(s)	377, 524, 1226
ArsI	GACNNNNNNTTYG	3 cut(s)	34, 228, 260
Asp700I	GAANNNNTTC	2 cut(s)	562, 1161
Asp718I	GGTACC	1 cut(s)	881
AspLEI	GCGC	1 cut(s)	1028
AspS9I	GGNCC	4 cut(s)	281, 299, 408, 788
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	2 cut(s)	737, 1157
AsuII	TTCGAA	1 cut(s)	331
AvaII	GGWCC	2 cut(s)	408, 788
BalI	TGGCCA	1 cut(s)	180
BanI	GGYRCC	2 cut(s)	164, 881
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	95, 221, 947
BccI	CCATC	6 cut(s)	116, 170, 440, 659, 995, 1048
BciT130I	CCWGG	3 cut(s)	466, 792, 924
BciVI	GTATCC	1 cut(s)	1125
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	858, 1101
BcuI	ACTAGT	2 cut(s)	515, 650
BfaI	CTAG	3 cut(s)	516, 651, 774
BfmI	CTRYAG	1 cut(s)	304
BfrI	CTTAAG	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	1125
BisI	GCNGC	3 cut(s)	84, 210, 936
BlsI	GCNGC	3 cut(s)	85, 211, 937
Bme1390I	CCNGG	4 cut(s)	466, 554, 792, 924
Bme18I	GGWCC	2 cut(s)	408, 788
BmgT120I	GGNCC	4 cut(s)	281, 299, 408, 788
BmiI	GGNNCC	4 cut(s)	166, 301, 439, 883
BmrFI	CCNGG	4 cut(s)	466, 554, 792, 924
BmsI	GCATC	2 cut(s)	810, 1187
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
BpmI	CTGGAG	1 cut(s)	906
Bpu14I	TTCGAA	1 cut(s)	331
BpuEI	CTTGAG	3 cut(s)	614, 673, 1083
BpuMI	CCSGG	1 cut(s)	554
Bsa29I	ATCGAT	1 cut(s)	996
BsaHI	GRCGYC	1 cut(s)	1037
BsaJI	CCNNGG	2 cut(s)	411, 553
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	3 cut(s)	797, 836, 1174
Bse1I	ACTGG	1 cut(s)	727
Bse3DI	GCAATG	2 cut(s)	714, 777
BseBI	CCWGG	3 cut(s)	466, 792, 924
BseCI	ATCGAT	1 cut(s)	996
BseDI	CCNNGG	2 cut(s)	411, 553
BseLI	CCNNNNNNNGG	3 cut(s)	797, 836, 1174
BseMI	GCAATG	2 cut(s)	714, 777
BseMII	CTCAG	1 cut(s)	1046
BseNI	ACTGG	1 cut(s)	727
BseXI	GCAGC	3 cut(s)	95, 221, 947
BsgI	GTGCAG	2 cut(s)	853, 954
BshFI	GGCC	4 cut(s)	180, 282, 300, 469
BshNI	GGYRCC	2 cut(s)	164, 881
BshVI	ATCGAT	1 cut(s)	996
BsiHKAI	GWGCWC	1 cut(s)	485
BsiSI	CCGG	2 cut(s)	429, 553
BslI	CCNNNNNNNGG	3 cut(s)	797, 836, 1174
BsmAI	GTCTC	2 cut(s)	858, 1101
BsmBI	CGTCTC	1 cut(s)	1101
BsnI	GGCC	4 cut(s)	180, 282, 300, 469
Bsp119I	TTCGAA	1 cut(s)	331
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	4 cut(s)	118, 549, 900, 997
BspACI	CCGC	2 cut(s)	387, 435
BspANI	GGCC	4 cut(s)	180, 282, 300, 469
BspCNI	CTCAG	1 cut(s)	1045
BspDI	ATCGAT	1 cut(s)	996
BspHI	TCATGA	1 cut(s)	966
BspLI	GGNNCC	4 cut(s)	166, 301, 439, 883
BspMAI	CTGCAG	1 cut(s)	308
BspPI	GGATC	2 cut(s)	544, 908
BspT104I	TTCGAA	1 cut(s)	331
BspT107I	GGYRCC	2 cut(s)	164, 881
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	714, 777
BsrI	ACTGG	1 cut(s)	727
BssECI	CCNNGG	2 cut(s)	411, 553
BssMI	GATC	4 cut(s)	118, 549, 900, 997
BssNI	GRCGYC	1 cut(s)	1037
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	3 cut(s)	466, 792, 924
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	1 cut(s)	709
BstACI	GRCGYC	1 cut(s)	1037
BstAFI	CTTAAG	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	101
BstDEI	CTNAG	3 cut(s)	486, 1016, 1032
BstHHI	GCGC	1 cut(s)	1028
BstKTI	GATC	4 cut(s)	121, 552, 903, 1000
BstMAI	GTCTC	2 cut(s)	858, 1101
BstMBI	GATC	4 cut(s)	118, 549, 900, 997
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 206
BstNI	CCWGG	3 cut(s)	466, 792, 924
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	4 cut(s)	464, 552, 790, 922
BstSFI	CTRYAG	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	95, 221, 947
Bsu15I	ATCGAT	1 cut(s)	996
BsuI	GTATCC	1 cut(s)	1125
BsuRI	GGCC	4 cut(s)	180, 282, 300, 469
BsuTUI	ATCGAT	1 cut(s)	996
BtsIMutI	CAGTG	3 cut(s)	552, 573, 811
Cac8I	GCNNGC	1 cut(s)	101
CaiI	CAGNNNCTG	1 cut(s)	867
CciI	TCATGA	1 cut(s)	966
CfoI	GCGC	1 cut(s)	1028
Cfr13I	GGNCC	4 cut(s)	281, 299, 408, 788
ClaI	ATCGAT	1 cut(s)	996
CseI	GACGC	1 cut(s)	1045
CsiI	ACCWGGT	1 cut(s)	790
Csp6I	GTAC	3 cut(s)	697, 882, 1257
CviAII	CATG	9 cut(s)	274, 535, 577, 797, 909, 946, 967, 1137, 1254
CviQI	GTAC	3 cut(s)	697, 882, 1257
DdeI	CTNAG	3 cut(s)	486, 1016, 1032
DpnI	GATC	4 cut(s)	120, 551, 902, 999
DpnII	GATC	4 cut(s)	118, 549, 900, 997
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	1 cut(s)	709
EarI	CTCTTC	1 cut(s)	709
EciI	GGCGGA	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	408, 788
Eco57I	CTGAAG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	377
EcoRII	CCWGG	3 cut(s)	464, 790, 922
EcoT14I	CCWWGG	1 cut(s)	411
ErhI	CCWWGG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	1101
FaeI	CATG	9 cut(s)	277, 538, 580, 800, 912, 949, 970, 1140, 1257
FatI	CATG	9 cut(s)	273, 534, 576, 796, 908, 945, 966, 1136, 1253
Fnu4HI	GCNGC	3 cut(s)	84, 210, 936
Fsp4HI	GCNGC	3 cut(s)	84, 210, 936
FspBI	CTAG	3 cut(s)	516, 651, 774
GlaI	GCGC	1 cut(s)	1027
GluI	GCNGC	3 cut(s)	84, 210, 936
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	4 cut(s)	180, 282, 300, 469
HapII	CCGG	2 cut(s)	429, 553
HgaI	GACGC	1 cut(s)	1045
HhaI	GCGC	1 cut(s)	1028
Hin1I	GRCGYC	1 cut(s)	1037
Hin1II	CATG	9 cut(s)	277, 538, 580, 800, 912, 949, 970, 1140, 1257
Hin6I	GCGC	1 cut(s)	1026
HinP1I	GCGC	1 cut(s)	1026
HinfI	GANTC	6 cut(s)	89, 243, 394, 491, 634, 669
HpaII	CCGG	2 cut(s)	429, 553
HphI	GGTGA	2 cut(s)	737, 1157
Hpy166II	GTNNAC	7 cut(s)	247, 571, 626, 697, 788, 1013, 1165
Hpy188I	TCNGA	3 cut(s)	831, 863, 1035
Hpy188III	TCNNGA	5 cut(s)	154, 631, 904, 967, 1072
Hpy8I	GTNNAC	7 cut(s)	247, 571, 626, 697, 788, 1013, 1165
HpyAV	CCTTC	6 cut(s)	211, 343, 518, 743, 830, 1183
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	2 cut(s)	312, 762
HpyCH4V	TGCA	9 cut(s)	103, 306, 501, 735, 870, 935, 1106, 1112, 1209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 206
HpyF3I	CTNAG	3 cut(s)	486, 1016, 1032
HpySE526I	ACGT	2 cut(s)	312, 762
Hsp92I	GRCGYC	1 cut(s)	1037
Hsp92II	CATG	9 cut(s)	277, 538, 580, 800, 912, 949, 970, 1140, 1257
HspAI	GCGC	1 cut(s)	1026
KpnI	GGTACC	1 cut(s)	885
Kzo9I	GATC	4 cut(s)	118, 549, 900, 997
Lsp1109I	GCAGC	3 cut(s)	95, 221, 947
LweI	GCATC	2 cut(s)	810, 1187
MabI	ACCWGGT	1 cut(s)	790
MaeI	CTAG	3 cut(s)	516, 651, 774
MaeII	ACGT	2 cut(s)	312, 762
MaeIII	GTNAC	6 cut(s)	341, 708, 763, 976, 1058, 1195
MalI	GATC	4 cut(s)	120, 551, 902, 999
MboI	GATC	4 cut(s)	118, 549, 900, 997
MboII	GAAGA	6 cut(s)	320, 555, 696, 1083, 1169, 1198
MfeI	CAATTG	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	485
MlsI	TGGCCA	1 cut(s)	180
MluCI	AATT	5 cut(s)	377, 398, 496, 524, 1226
MluNI	TGGCCA	1 cut(s)	180
MlyI	GAGTC	2 cut(s)	252, 485
MmeI	TCCRAC	3 cut(s)	371, 536, 724
Mox20I	TGGCCA	1 cut(s)	180
MroXI	GAANNNNTTC	2 cut(s)	562, 1161
MscI	TGGCCA	1 cut(s)	180
MseI	TTAA	3 cut(s)	288, 1218, 1261
MslI	CAYNNNNRTG	5 cut(s)	806, 944, 965, 1117, 1252
Msp20I	TGGCCA	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	287
MspI	CCGG	2 cut(s)	429, 553
MspR9I	CCNGG	4 cut(s)	466, 554, 792, 924
MunI	CAATTG	1 cut(s)	496
MvaI	CCWGG	3 cut(s)	466, 792, 924
MwoI	GCNNNNNNNGC	2 cut(s)	37, 206
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	4 cut(s)	118, 549, 900, 997
NlaIII	CATG	9 cut(s)	277, 538, 580, 800, 912, 949, 970, 1140, 1257
NlaIV	GGNNCC	4 cut(s)	166, 301, 439, 883
NmuCI	GTSAC	4 cut(s)	708, 976, 1058, 1195
NspI	RCATGY	1 cut(s)	580
NspV	TTCGAA	1 cut(s)	331
PagI	TCATGA	1 cut(s)	966
PdmI	GAANNNNTTC	2 cut(s)	562, 1161
PfeI	GAWTC	4 cut(s)	89, 394, 634, 669
PflFI	GACNNNGTC	1 cut(s)	792
PkrI	GCNGC	3 cut(s)	85, 211, 937
PleI	GAGTC	2 cut(s)	251, 485
PpsI	GAGTC	2 cut(s)	251, 485
Psp6I	CCWGG	3 cut(s)	464, 790, 922
PspGI	CCWGG	3 cut(s)	464, 790, 922
PspN4I	GGNNCC	4 cut(s)	166, 301, 439, 883
PspPI	GGNCC	4 cut(s)	281, 299, 408, 788
PstI	CTGCAG	1 cut(s)	308
PstNI	CAGNNNCTG	1 cut(s)	867
PsyI	GACNNNGTC	1 cut(s)	792
RsaI	GTAC	3 cut(s)	698, 883, 1258
RsaNI	GTAC	3 cut(s)	697, 882, 1257
RseI	CAYNNNNRTG	5 cut(s)	806, 944, 965, 1117, 1252
SaqAI	TTAA	3 cut(s)	288, 1218, 1261
SatI	GCNGC	3 cut(s)	84, 210, 936
Sau3AI	GATC	4 cut(s)	118, 549, 900, 997
Sau96I	GGNCC	4 cut(s)	281, 299, 408, 788
SchI	GAGTC	2 cut(s)	252, 485
ScrFI	CCNGG	4 cut(s)	466, 554, 792, 924
SduI	GDGCHC	1 cut(s)	485
SexAI	ACCWGGT	1 cut(s)	790
SfaNI	GCATC	2 cut(s)	810, 1187
SfcI	CTRYAG	1 cut(s)	304
SfuI	TTCGAA	1 cut(s)	331
SinI	GGWCC	2 cut(s)	408, 788
SmiMI	CAYNNNNRTG	5 cut(s)	806, 944, 965, 1117, 1252
SmlI	CTYRAG	4 cut(s)	287, 629, 688, 1098
SmoI	CTYRAG	4 cut(s)	287, 629, 688, 1098
SpeI	ACTAGT	2 cut(s)	515, 650
Sse9I	AATT	5 cut(s)	377, 398, 496, 524, 1226
SsiI	CCGC	2 cut(s)	387, 435
SspI	AATATT	1 cut(s)	1147
SspMI	CTAG	3 cut(s)	516, 651, 774
StyD4I	CCNGG	4 cut(s)	464, 552, 790, 922
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	2 cut(s)	315, 765
TaqI	TCGA	5 cut(s)	9, 331, 678, 996, 1043
TasI	AATT	5 cut(s)	377, 398, 496, 524, 1226
TatI	WGTACW	2 cut(s)	696, 1256
TfiI	GAWTC	4 cut(s)	89, 394, 634, 669
Tru1I	TTAA	3 cut(s)	288, 1218, 1261
Tru9I	TTAA	3 cut(s)	288, 1218, 1261
TscAI	CASTG	3 cut(s)	552, 573, 811
TseFI	GTSAC	4 cut(s)	708, 976, 1058, 1195
TseI	GCWGC	3 cut(s)	83, 209, 935
Tsp45I	GTSAC	4 cut(s)	708, 976, 1058, 1195
TspDTI	ATGAA	7 cut(s)	350, 390, 551, 575, 849, 983, 1219
TspRI	CASTG	3 cut(s)	552, 573, 811
Tth111I	GACNNNGTC	1 cut(s)	792
Vha464I	CTTAAG	1 cut(s)	287
VpaK11BI	GGWCC	2 cut(s)	408, 788
XapI	RAATTY	3 cut(s)	377, 524, 1226
XceI	RCATGY	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XmnI	GAANNNNTTC	2 cut(s)	562, 1161
XspI	CTAG	3 cut(s)	516, 651, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.