Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035236.1

Orthogroup ID

OG0014404

Physical Location & Seq

Genomic Coordinates Forward (+)

18187 .. 19502

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035236.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgaatacttacttgcagggttacttgaaggctacagcggagttgtccaagtatgaattcggtggtggttggattgaatttgcttggatgaaggggctaaccttgaccggaggcggaacctttgatggtcaaggtgctaaagcctggcctcacaataagtgctctaaagactccaattgcaaacttcttccaactagtttgaaatttgttgcaatgaataagacagtgatccggggcatatcctcggtgaacagcaagttctttcatatagctgttgtggaatgtcacaacttcaaaggtagtaaactcaagattcaagccccagaaactagtcctaatactgatggaatccacattgaacgaagctcgagtgtgtacttctcttcgtcacacattgctactggcgatgactgcatctcagttggacaagggaactcccaagtcactataactagcattgcttgtggacctggtcatggcatcagtgtgggaagtttgggaaaatatccgaatgaaggtgatgttagtgggcttgtggtcagagactgcaccatttcaggtaccacaaatggtattaggatcaagacatgggctaactctccaggtagaagtgcagccaccaacatgacattcacaaacatcatcatgaacaatgtgaccaaccccatcataatcgatcagacatattgtccattcacgtcttgcgctactaaggtgccatcaaaagtggagctgagtgacatttacttcaagaacataagagggacctcgtcgtctcaagtagcggttgcacttgaatgtagcaaagggattccatgccagaacatttaccttgaagatgttcatctggacttgtcatctgggaagaaggaagccacttcaacttgcagtaatgttaaagccaaattcattggcacccaaatcccaccaccatgtactgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010393 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019863 GO:0019865 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044877 GO:0045488 GO:0045490 GO:0047911 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

314

Amino Acids

33.56

Weight (kDa)

8.65

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18180
fragaria_vesca	FvH4_2g16950
malus_domestica	MD05G1141300.v1.1 MD05G1142200.v1.1
prunus_persica	Prupe.8G181300_v2.0.a1
pyrus_communis	pycom05g13670
rosa_chinensis	RchiOBHm_Chr6g0281151
rosa_laevigata	RLG00000012990
rosa_multiflora	Rmu_co8202118.1_g000001 Rmu_sc0035236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187250
rosa_rugosa	Rorug06G0139300
rosa_samantha	Rh6AG251100 Rh6BG254300 Rh6CG253700 Rh6DG245700
rosa_wichuraiana	Rw6G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	772
Acc65I	GGTACC	1 cut(s)	560
AccB1I	GGYRCC	3 cut(s)	560, 715, 914
AciI	CCGC	3 cut(s)	38, 114, 785
AclWI	GGATC	2 cut(s)	223, 587
AcsI	RAATTY	4 cut(s)	56, 77, 203, 905
AfaI	GTAC	3 cut(s)	377, 562, 937
AfiI	CCNNNNNNNGG	2 cut(s)	476, 515
AhdI	GACNNNNNGTC	1 cut(s)	687
AhlI	ACTAGT	2 cut(s)	194, 329
AjiI	CACGTC	1 cut(s)	699
AjnI	CCWGG	3 cut(s)	143, 469, 601
AjuI	GAANNNNNNNTTGG	4 cut(s)	41, 73, 614, 646
AluBI	AGCT	3 cut(s)	272, 366, 733
AluI	AGCT	3 cut(s)	272, 366, 733
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	2 cut(s)	537, 780
AlwI	GGATC	2 cut(s)	223, 587
AlwNI	CAGNNNCTG	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	4 cut(s)	56, 77, 203, 905
Asp700I	GAANNNNTTC	1 cut(s)	840
Asp718I	GGTACC	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	707
AspS9I	GGNCC	2 cut(s)	467, 765
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	259, 530
AvaI	CYCGRG	1 cut(s)	367
AvaII	GGWCC	2 cut(s)	467, 765
BanI	GGYRCC	3 cut(s)	560, 715, 914
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	4 cut(s)	119, 338, 674, 727
BciT130I	CCWGG	3 cut(s)	145, 471, 603
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	2 cut(s)	537, 780
BcuI	ACTAGT	2 cut(s)	194, 329
BfaI	CTAG	3 cut(s)	195, 330, 453
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	616
Bme1390I	CCNGG	4 cut(s)	145, 233, 471, 603
Bme18I	GGWCC	2 cut(s)	467, 765
BmeRI	GACNNNNNGTC	1 cut(s)	687
BmeT110I	CYCGRG	1 cut(s)	367
BmgBI	CACGTC	1 cut(s)	699
BmgT120I	GGNCC	2 cut(s)	467, 765
BmiI	GGNNCC	5 cut(s)	118, 562, 717, 766, 916
BmrFI	CCNGG	4 cut(s)	145, 233, 471, 603
BmsI	GCATC	2 cut(s)	423, 489
BpmI	CTGGAG	1 cut(s)	585
BpuEI	CTTGAG	2 cut(s)	293, 762
BpuMI	CCSGG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	675
BsaBI	GATNNNNATC	1 cut(s)	843
BsaJI	CCNNGG	2 cut(s)	232, 243
BsaWI	WCCGGW	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	476, 515
Bse1I	ACTGG	1 cut(s)	406
Bse3DI	GCAATG	3 cut(s)	219, 393, 456
Bse8I	GATNNNNATC	1 cut(s)	843
BseBI	CCWGG	3 cut(s)	145, 471, 603
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	2 cut(s)	232, 243
BseGI	GGATG	1 cut(s)	93
BseJI	GATNNNNATC	1 cut(s)	843
BseLI	CCNNNNNNNGG	2 cut(s)	476, 515
BseMI	GCAATG	3 cut(s)	219, 393, 456
BseMII	CTCAG	2 cut(s)	432, 725
BseNI	ACTGG	1 cut(s)	406
BseXI	GCAGC	1 cut(s)	626
BsgI	GTGCAG	2 cut(s)	532, 633
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	3 cut(s)	560, 715, 914
BshVI	ATCGAT	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	108, 232
BslFI	GGGAC	1 cut(s)	778
BslI	CCNNNNNNNGG	2 cut(s)	476, 515
BsmAI	GTCTC	2 cut(s)	537, 780
BsmBI	CGTCTC	1 cut(s)	780
BsmFI	GGGAC	1 cut(s)	778
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	228, 579, 676
BspACI	CCGC	3 cut(s)	38, 114, 785
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	2 cut(s)	431, 726
BspDI	ATCGAT	1 cut(s)	675
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	5 cut(s)	118, 562, 717, 766, 916
BspPI	GGATC	2 cut(s)	223, 587
BspT107I	GGYRCC	3 cut(s)	560, 715, 914
BsrDI	GCAATG	3 cut(s)	219, 393, 456
BsrI	ACTGG	1 cut(s)	406
BssECI	CCNNGG	2 cut(s)	232, 243
BssMI	GATC	3 cut(s)	228, 579, 676
Bst2UI	CCWGG	3 cut(s)	145, 471, 603
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	388
BstDEI	CTNAG	3 cut(s)	418, 711, 734
BstF5I	GGATG	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	707
BstKTI	GATC	3 cut(s)	231, 582, 679
BstMAI	GTCTC	2 cut(s)	537, 780
BstMBI	GATC	3 cut(s)	228, 579, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstNI	CCWGG	3 cut(s)	145, 471, 603
BstSCI	CCNGG	4 cut(s)	143, 231, 469, 601
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	626
Bsu15I	ATCGAT	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	148
BsuTUI	ATCGAT	1 cut(s)	675
BtgZI	GCGATG	1 cut(s)	420
BtrI	CACGTC	1 cut(s)	699
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	231, 490
CaiI	CAGNNNCTG	1 cut(s)	546
CciI	TCATGA	1 cut(s)	645
CfoI	GCGC	1 cut(s)	707
Cfr13I	GGNCC	2 cut(s)	467, 765
ClaI	ATCGAT	1 cut(s)	675
CsiI	ACCWGGT	1 cut(s)	469
Csp6I	GTAC	3 cut(s)	376, 561, 936
CviAII	CATG	6 cut(s)	476, 588, 625, 646, 816, 933
CviQI	GTAC	3 cut(s)	376, 561, 936
DdeI	CTNAG	3 cut(s)	418, 711, 734
DpnI	GATC	3 cut(s)	230, 581, 678
DpnII	GATC	3 cut(s)	228, 579, 676
DrdI	GACNNNNNNGTC	1 cut(s)	772
DriI	GACNNNNNGTC	1 cut(s)	687
DseDI	GACNNNNNNGTC	1 cut(s)	772
Eam1104I	CTCTTC	1 cut(s)	388
Eam1105I	GACNNNNNGTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	388
EciI	GGCGGA	1 cut(s)	129
Eco47I	GGWCC	2 cut(s)	467, 765
Eco88I	CYCGRG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	765
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	143, 469, 601
Esp3I	CGTCTC	1 cut(s)	780
FaeI	CATG	6 cut(s)	479, 591, 628, 649, 819, 936
FaqI	GGGAC	1 cut(s)	778
FatI	CATG	6 cut(s)	475, 587, 624, 645, 815, 932
Fnu4HI	GCNGC	1 cut(s)	615
FokI	GGATG	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	615
FspBI	CTAG	3 cut(s)	195, 330, 453
GlaI	GCGC	1 cut(s)	706
GluI	GCNGC	1 cut(s)	615
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	2 cut(s)	108, 232
HhaI	GCGC	1 cut(s)	707
Hin1II	CATG	6 cut(s)	479, 591, 628, 649, 819, 936
Hin6I	GCGC	1 cut(s)	705
HinP1I	GCGC	1 cut(s)	705
HinfI	GANTC	4 cut(s)	170, 313, 348, 811
HpaII	CCGG	2 cut(s)	108, 232
HphI	GGTGA	2 cut(s)	259, 530
Hpy166II	GTNNAC	4 cut(s)	250, 305, 376, 467
Hpy188I	TCNGA	3 cut(s)	510, 542, 681
Hpy188III	TCNNGA	5 cut(s)	310, 583, 646, 751, 848
Hpy8I	GTNNAC	4 cut(s)	250, 305, 376, 467
Hpy99I	CGWCG	1 cut(s)	775
HpyAV	CCTTC	4 cut(s)	22, 85, 509, 862
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	698
HpyCH4V	TGCA	8 cut(s)	16, 180, 212, 414, 549, 614, 791, 888
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
HpyF3I	CTNAG	3 cut(s)	418, 711, 734
HpySE526I	ACGT	1 cut(s)	698
Hsp92II	CATG	6 cut(s)	479, 591, 628, 649, 819, 936
HspAI	GCGC	1 cut(s)	705
KpnI	GGTACC	1 cut(s)	564
Kzo9I	GATC	3 cut(s)	228, 579, 676
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	2 cut(s)	423, 489
MabI	ACCWGGT	1 cut(s)	469
MaeI	CTAG	3 cut(s)	195, 330, 453
MaeII	ACGT	1 cut(s)	698
MaeIII	GTNAC	6 cut(s)	20, 284, 387, 442, 655, 737
MalI	GATC	3 cut(s)	230, 581, 678
MboI	GATC	3 cut(s)	228, 579, 676
MboII	GAAGA	4 cut(s)	179, 375, 848, 877
MfeI	CAATTG	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	5 cut(s)	56, 77, 175, 203, 905
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	3 cut(s)	50, 215, 403
MnlI	CCTC	5 cut(s)	104, 159, 253, 755, 778
MroXI	GAANNNNTTC	1 cut(s)	840
MseI	TTAA	1 cut(s)	897
MslI	CAYNNNNRTG	5 cut(s)	485, 623, 644, 796, 931
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	2 cut(s)	108, 232
MspR9I	CCNGG	4 cut(s)	145, 233, 471, 603
MunI	CAATTG	1 cut(s)	175
MvaI	CCWGG	3 cut(s)	145, 471, 603
MwoI	GCNNNNNNNGC	1 cut(s)	411
NciI	CCSGG	1 cut(s)	233
NdeII	GATC	3 cut(s)	228, 579, 676
NlaIII	CATG	6 cut(s)	479, 591, 628, 649, 819, 936
NlaIV	GGNNCC	5 cut(s)	118, 562, 717, 766, 916
NmuCI	GTSAC	5 cut(s)	284, 387, 442, 655, 737
PaeR7I	CTCGAG	1 cut(s)	367
PagI	TCATGA	1 cut(s)	645
PdmI	GAANNNNTTC	1 cut(s)	840
PfeI	GAWTC	3 cut(s)	313, 348, 811
PflFI	GACNNNGTC	2 cut(s)	471, 769
PkrI	GCNGC	1 cut(s)	616
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	765
Psp5II	RGGWCCY	1 cut(s)	765
Psp6I	CCWGG	3 cut(s)	143, 469, 601
PspGI	CCWGG	3 cut(s)	143, 469, 601
PspN4I	GGNNCC	5 cut(s)	118, 562, 717, 766, 916
PspPI	GGNCC	2 cut(s)	467, 765
PspPPI	RGGWCCY	1 cut(s)	765
PspXI	VCTCGAGB	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	546
PsyI	GACNNNGTC	2 cut(s)	471, 769
RsaI	GTAC	3 cut(s)	377, 562, 937
RsaNI	GTAC	3 cut(s)	376, 561, 936
RseI	CAYNNNNRTG	5 cut(s)	485, 623, 644, 796, 931
SaqAI	TTAA	1 cut(s)	897
SatI	GCNGC	1 cut(s)	615
Sau3AI	GATC	3 cut(s)	228, 579, 676
Sau96I	GGNCC	2 cut(s)	467, 765
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	4 cut(s)	145, 233, 471, 603
SduI	GDGCHC	1 cut(s)	164
SexAI	ACCWGGT	1 cut(s)	469
SfaNI	GCATC	2 cut(s)	423, 489
SfcI	CTRYAG	1 cut(s)	33
Sfr274I	CTCGAG	1 cut(s)	367
SinI	GGWCC	2 cut(s)	467, 765
SlaI	CTCGAG	1 cut(s)	367
SmiMI	CAYNNNNRTG	5 cut(s)	485, 623, 644, 796, 931
SmlI	CTYRAG	3 cut(s)	308, 367, 777
SmoI	CTYRAG	3 cut(s)	308, 367, 777
SpeI	ACTAGT	2 cut(s)	194, 329
Sse9I	AATT	5 cut(s)	56, 77, 175, 203, 905
SsiI	CCGC	3 cut(s)	38, 114, 785
SspMI	CTAG	3 cut(s)	195, 330, 453
StyD4I	CCNGG	4 cut(s)	143, 231, 469, 601
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	701
TaqI	TCGA	2 cut(s)	368, 675
TasI	AATT	5 cut(s)	56, 77, 175, 203, 905
TatI	WGTACW	2 cut(s)	375, 935
TfiI	GAWTC	3 cut(s)	313, 348, 811
Tru1I	TTAA	1 cut(s)	897
Tru9I	TTAA	1 cut(s)	897
TscAI	CASTG	2 cut(s)	231, 490
TseFI	GTSAC	5 cut(s)	284, 387, 442, 655, 737
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	5 cut(s)	284, 387, 442, 655, 737
TspDTI	ATGAA	9 cut(s)	17, 69, 104, 230, 254, 528, 662, 833, 898
TspRI	CASTG	2 cut(s)	231, 490
Tth111I	GACNNNGTC	2 cut(s)	471, 769
VpaK11BI	GGWCC	2 cut(s)	467, 765
XapI	RAATTY	4 cut(s)	56, 77, 203, 905
XhoI	CTCGAG	1 cut(s)	367
XmnI	GAANNNNTTC	1 cut(s)	840
XspI	CTAG	3 cut(s)	195, 330, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.