Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8202118.1

Orthogroup ID

OG0014404

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 513

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8202118.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

gatgttagtgggcttgtggtcagagactgcaccatttcaggtaccacaaatggtattaggatcaagacatgggctaactctccaggtagaagtgcagccaccaacatgacattcacaaacatcatcatgaacaatgtgaccaaccccatcataatcgatcagacatattgtccattcacgtcttgcgctactaaggtgccatcaaaagtggagctgagtgacatttacttcaagaacataagagggacctcgtcgtctcaagtagcggttgcacttgaatgtagcaaagggattccatgccagaacatttaccttgaagatgttcatctgaacttgtcatctgggaagaaggaagccacttcaacttgcagtaatgttaaagccaaattcattggcacccaaatcccaccaccatgtactgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010393 GO:0016052 GO:0016787 GO:0016798 GO:0017144 GO:0019863 GO:0019865 GO:0042737 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044877 GO:0045488 GO:0045490 GO:0047911 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

141

Amino Acids

15.14

Weight (kDa)

8.51

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18180
fragaria_vesca	FvH4_2g16950
malus_domestica	MD05G1141300.v1.1 MD05G1142200.v1.1
prunus_persica	Prupe.8G181300_v2.0.a1
pyrus_communis	pycom05g13670
rosa_chinensis	RchiOBHm_Chr6g0281151
rosa_laevigata	RLG00000012990
rosa_multiflora	Rmu_co8202118.1_g000001 Rmu_sc0035236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00187250
rosa_rugosa	Rorug06G0139300
rosa_samantha	Rh6AG251100 Rh6BG254300 Rh6CG253700 Rh6DG245700
rosa_wichuraiana	Rw6G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	253
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	3 cut(s)	41, 196, 395
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	2 cut(s)	43, 418
AgsI	TTSAA	4 cut(s)	232, 278, 317, 363
AhdI	GACNNNNNGTC	1 cut(s)	168
AjiI	CACGTC	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	18, 261
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	27
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	386
Asp700I	GAANNNNTTC	1 cut(s)	321
Asp718I	GGTACC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	246
BanI	GGYRCC	3 cut(s)	41, 196, 395
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	2 cut(s)	155, 208
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	18, 261
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	246
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	4 cut(s)	43, 198, 247, 397
BmrFI	CCNGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	243
Bsa29I	ATCGAT	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	324
BseMII	CTCAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	107
BsgI	GTGCAG	2 cut(s)	13, 114
BshNI	GGYRCC	3 cut(s)	41, 196, 395
BshVI	ATCGAT	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	259
BsmAI	GTCTC	2 cut(s)	18, 261
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	60, 157
BspACI	CCGC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	126
BspLI	GGNNCC	4 cut(s)	43, 198, 247, 397
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	3 cut(s)	41, 196, 395
BssMI	GATC	2 cut(s)	60, 157
Bst2UI	CCWGG	1 cut(s)	84
BstDEI	CTNAG	2 cut(s)	192, 215
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	2 cut(s)	63, 160
BstMAI	GTCTC	2 cut(s)	18, 261
BstMBI	GATC	2 cut(s)	60, 157
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	156
BsuTUI	ATCGAT	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	180
CaiI	CAGNNNCTG	1 cut(s)	27
CciI	TCATGA	1 cut(s)	126
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	42, 417
CviAII	CATG	5 cut(s)	69, 106, 127, 297, 414
CviJI	RGCY	6 cut(s)	13, 74, 98, 214, 356, 383
CviKI_1	RGCY	6 cut(s)	13, 74, 98, 214, 356, 383
CviQI	GTAC	2 cut(s)	42, 417
DdeI	CTNAG	2 cut(s)	192, 215
DpnI	GATC	2 cut(s)	62, 159
DpnII	GATC	2 cut(s)	60, 157
DrdI	GACNNNNNNGTC	1 cut(s)	253
DriI	GACNNNNNGTC	1 cut(s)	168
DseDI	GACNNNNNNGTC	1 cut(s)	253
Eam1105I	GACNNNNNGTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	246
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRII	CCWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	5 cut(s)	72, 109, 130, 300, 417
FaiI	YATR	8 cut(s)	70, 107, 128, 152, 166, 239, 298, 415
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	5 cut(s)	68, 105, 126, 296, 413
Fnu4HI	GCNGC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	96
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	5 cut(s)	72, 109, 130, 300, 417
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	23, 162, 330
Hpy188III	TCNNGA	3 cut(s)	64, 127, 232
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	4 cut(s)	30, 95, 272, 369
HpyF3I	CTNAG	2 cut(s)	192, 215
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	5 cut(s)	72, 109, 130, 300, 417
HspAI	GCGC	1 cut(s)	186
KpnI	GGTACC	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	60, 157
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	5 cut(s)	24, 69, 96, 314, 327
Lsp1109I	GCAGC	1 cut(s)	107
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	2 cut(s)	136, 218
MalI	GATC	2 cut(s)	62, 159
MboI	GATC	2 cut(s)	60, 157
MboII	GAAGA	2 cut(s)	329, 358
MluCI	AATT	1 cut(s)	386
MnlI	CCTC	2 cut(s)	236, 259
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	4 cut(s)	104, 125, 277, 412
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	60, 157
NlaIII	CATG	5 cut(s)	72, 109, 130, 300, 417
NlaIV	GGNNCC	4 cut(s)	43, 198, 247, 397
NmuCI	GTSAC	2 cut(s)	136, 218
PagI	TCATGA	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	292
PflFI	GACNNNGTC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	4 cut(s)	43, 198, 247, 397
PspPI	GGNCC	1 cut(s)	246
PspPPI	RGGWCCY	1 cut(s)	246
PstNI	CAGNNNCTG	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	250
RsaI	GTAC	2 cut(s)	43, 418
RsaNI	GTAC	2 cut(s)	42, 417
RseI	CAYNNNNRTG	4 cut(s)	104, 125, 277, 412
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	2 cut(s)	60, 157
Sau96I	GGNCC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	7 cut(s)	43, 88, 182, 198, 216, 251, 315
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	4 cut(s)	104, 125, 277, 412
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	82
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	386
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	2 cut(s)	136, 218
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	2 cut(s)	136, 218
TspDTI	ATGAA	3 cut(s)	143, 314, 379
Tth111I	GACNNNGTC	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.